Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) and species-specific PCR for identification of Bifidobacterium species
Language English Country Germany Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
16423654
DOI
10.1016/j.syapm.2005.07.003
PII: S0723-2020(05)00145-1
Knihovny.cz E-resources
- MeSH
- Bifidobacterium classification genetics isolation & purification MeSH
- DNA, Bacterial chemistry genetics MeSH
- Species Specificity MeSH
- Phylogeny MeSH
- Humans MeSH
- DNA, Ribosomal Spacer chemistry genetics MeSH
- Polymerase Chain Reaction methods MeSH
- Polymorphism, Restriction Fragment Length * MeSH
- RNA, Ribosomal, 16S chemistry genetics MeSH
- RNA, Ribosomal, 23S chemistry genetics MeSH
- Base Sequence MeSH
- Sequence Alignment MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- DNA, Bacterial MeSH
- DNA, Ribosomal Spacer MeSH
- RNA, Ribosomal, 16S MeSH
- RNA, Ribosomal, 23S MeSH
Molecular biological methods based on genus-specific PCR, species-specific PCR, and amplified ribosomal DNA restriction analysis (ARDRA) of two PCR amplicons (523 and 914bp) using six restriction enzymes were used to differentiate among species of Bifidobacterium. The techniques were established using DNA from 16 type and reference strains of bifidobacteria of 11 species. The discrimination power of 914bp amplicon digestion was higher than that of 523bp amplicon digestion. The 914bp amplicon digestion by six restrictases provided unique patterns for nine species; B. catenulatum and B. pseudocatenulatum were not differentiated yet. The NciI digestion of the 914bp PCR product enabled to discriminate between each of B. animalis, B. lactis, and B. gallicum. The reference strain B. adolescentis CCM 3761 was reclassified as a member of the B. catenulatum/B. pseudocatenulatum group. The above-mentioned methods were applied for the identification of seven strains of Bifidobacterium spp. collected in the Culture Collection of Dairy Microorganisms (CCDM). The strains collected in CCDM were differentiated to the species level. Six strains were identified as B. lactis, one strain as B. adolescentis.
References provided by Crossref.org
RAPD and rep-PCR fingerprinting for characterization of Bifidobacterium species