Structure of the H107R variant of the extracellular domain of mouse NKR-P1A at 2.3 Å resolution
Language English Country England, Great Britain Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
22139156
PubMed Central
PMC3232129
DOI
10.1107/s1744309111046203
PII: S1744309111046203
Knihovny.cz E-resources
- MeSH
- Extracellular Space chemistry MeSH
- Crystallography, X-Ray MeSH
- Protein Structure, Quaternary MeSH
- NK Cell Lectin-Like Receptor Subfamily B chemistry genetics MeSH
- Models, Molecular MeSH
- Mutation * MeSH
- Mice MeSH
- Protein Structure, Tertiary MeSH
- Animals MeSH
- Check Tag
- Mice MeSH
- Animals MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- NK Cell Lectin-Like Receptor Subfamily B MeSH
The structure of the H107R variant of the extracellular domain of the mouse natural killer cell receptor NKR-P1A has been determined by X-ray diffraction at 2.3 Å resolution from a merohedrally twinned crystal. Unlike the structure of the wild-type receptor in space group I4(1)22 with a single chain per asymmetric unit, the crystals of the variant belonged to space group I4(1) with a dimer in the asymmetric unit. Different degrees of merohedral twinning were detected in five data sets collected from different crystals. The mutation does not have a significant impact on the overall structure, but led to the binding of an additional phosphate ion at the interface of the molecules.
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Aldemir, H., Prod’homme, V., Dumaurier, M.-J., Retiere, C., Poupon, G., Cazareth, J., Bihl, F. & Braud, V. M. (2005). J. Immunol. 175, 7791–7795. PubMed
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235–242. PubMed PMC
Bezouška, K., Yuen, C.-T., O’Brien, J., Childs, R. A., Chai, W., Lawson, A. M., Drbal, K., Fišerová, A., Pospíšil, M. & Feizi, T. (1994). Nature (London), 372, 150–157. PubMed
Carlyle, J. R., Jamieson, A. M., Gasser, S., Clingan, C. S., Arase, H. & Raulet, D. H. (2004). Proc. Natl Acad. Sci. USA, 101, 3527–3532. PubMed PMC
Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12–21. PubMed PMC
Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126–2132. PubMed
Iizuka, K., Naidenko, O. V., Plougastel, B. F., Fremont, D. H. & Yokoyama, W. M. (2003). Nature Immunol. 4, 801–807. PubMed
Kabsch, W. (2010). Acta Cryst. D66, 125–132. PubMed PMC
Kolenko, P., Rozbeský, D., Vaněk, O., Kopecký, V., Hofbauerová, K., Novák, P., Pompach, P., Hašek, J., Skálová, T., Bezouška, K. & Dohnálek, J. (2011). J. Struct. Biol. 175, 434–441. PubMed
Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774–797. PubMed
Kveberg, L., Dai, K. Z., Westgaard, I. H., Daws, M. R., Fossum, S., Naper, C. & Vaage, J. T. (2009). Eur. J. Immunol. 39, 541–551. PubMed
Makrigiannis, A. P., Pau, A. T., Saleh, A., Winkler-Pickett, R., Ortaldo, J. R. & Anderson, S. K. (2001). J. Immunol. 166, 5034–5043. PubMed
Mesci, A., Ljutic, B., Makrigiannis, A. P. & Carlyle, J. R. (2006). Immunol. Res. 35, 13–26. PubMed
Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355–367. PubMed PMC
Rosen, D. B., Bettadapura, J., Alsharifi, M., Mathew, P. A., Warren, H. S. & Lanier, L. L. (2005). J. Immunol. 176, 7796–7799. PubMed
Skálová, T., Dušková, J., Hašek, J., Kolenko, P., Štěpánková, A. & Dohnálek, J. (2010). J. Appl. Cryst. 43, 737–742.
Sovová, Z., Kopecký, V., Pazderka, T., Hofbauerová, K., Rozbeský, D., Vaněk, O., Bezouška, K. & Ettrich, R. (2011). J. Mol. Model. 17, 1353–1370. PubMed
Vagin, A. & Teplyakov, A. (2010). Acta Cryst. D66, 22–25. PubMed
Vivier, E., Tomasello, E., Baratin, M., Walzer, T. & Ugolini, S. (2008). Nature Immunol. 9, 503–510. PubMed
Winn, M. D. et al. (2011). Acta Cryst. D67, 235–242. PubMed
Nkrp1 family, from lectins to protein interacting molecules
PDB
3T3A