A certified plasmid reference material for the standardisation of BCR-ABL1 mRNA quantification by real-time quantitative PCR
Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
Grantová podpora
Department of Health - United Kingdom
PubMed
25036192
PubMed Central
PMC4320294
DOI
10.1038/leu.2014.217
PII: leu2014217
Knihovny.cz E-zdroje
- MeSH
- bcr-abl fúzové proteiny genetika metabolismus MeSH
- DNA MeSH
- genová dávka MeSH
- kalibrace MeSH
- klonování DNA MeSH
- kvantitativní polymerázová řetězová reakce normy MeSH
- lidé MeSH
- membránové transportní proteiny genetika MeSH
- messenger RNA metabolismus MeSH
- plazmidy genetika MeSH
- proteiny z Escherichia coli genetika MeSH
- protoonkogenní proteiny c-bcr genetika MeSH
- referenční standardy MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- BCR protein, human MeSH Prohlížeč
- bcr-abl fúzové proteiny MeSH
- BCR-ABL1 fusion protein, human MeSH Prohlížeč
- DNA MeSH
- GusB protein, E coli MeSH Prohlížeč
- membránové transportní proteiny MeSH
- messenger RNA MeSH
- proteiny z Escherichia coli MeSH
- protoonkogenní proteiny c-bcr MeSH
Serial quantification of BCR-ABL1 mRNA is an important therapeutic indicator in chronic myeloid leukaemia, but there is a substantial variation in results reported by different laboratories. To improve comparability, an internationally accepted plasmid certified reference material (CRM) was developed according to ISO Guide 34:2009. Fragments of BCR-ABL1 (e14a2 mRNA fusion), BCR and GUSB transcripts were amplified and cloned into pUC18 to yield plasmid pIRMM0099. Six different linearised plasmid solutions were produced with the following copy number concentrations, assigned by digital PCR, and expanded uncertainties: 1.08±0.13 × 10(6), 1.08±0.11 × 10(5), 1.03±0.10 × 10(4), 1.02±0.09 × 10(3), 1.04±0.10 × 10(2) and 10.0±1.5 copies/μl. The certification of the material for the number of specific DNA fragments per plasmid, copy number concentration of the plasmid solutions and the assessment of inter-unit heterogeneity and stability were performed according to ISO Guide 35:2006. Two suitability studies performed by 63 BCR-ABL1 testing laboratories demonstrated that this set of 6 plasmid CRMs can help to standardise a number of measured transcripts of e14a2 BCR-ABL1 and three control genes (ABL1, BCR and GUSB). The set of six plasmid CRMs is distributed worldwide by the Institute for Reference Materials and Measurements (Belgium) and its authorised distributors (https://ec.europa.eu/jrc/en/reference-materials/catalogue/; CRM code ERM-AD623a-f).
] Department of Laboratory Medicine UZ Leuven Belgium [2] Department of Oncology KU Leuven Belgium
3 Medizinische Klinik Medizinische Fakultät Mannheim der Universität Heidelberg Mannheim Germany
Abteilung für Hämatologie und internistische Onkologie Universität Leipzig Leipzig Germany
Bristol Genetics Laboratory Southmead Hospital Bristol UK
Cancer Molecular Diagnostics St James's Hospital Dublin Ireland
Cancer Research Institute The Catholic University of Korea Seoul South Korea
Children's Cancer Research Institute LabDia Labordiagnostik and Medical University Vienna Austria
Combined Laboratories Derriford Hospital Plymouth UK
Department of Clinical and Biological Science University of Turin Turin Italy
Department of Clinical Genetics University and Regional Laboratories Lund Sweden
Department of Clinical Medicine and Surgery University 'Federico II' of Naples Naples Italy
Department of Experimental Diagnostic and Specialty Medicine University of Bologna Bologna Italy
Department of Genetics and Molecular Pathology SA Pathology Adelaide SA Australia
Department of Haematology Aarhus University Hospital Aarhus Denmark
Department of Haematology Royal Liverpool University Hospital Liverpool UK
Department of Hematology Oncology Jena University Hospital Jena Germany
Department of Immunology Erasmus MC Rotterdam The Netherlands
Department of Immunology Genetics and Pathology Uppsala University Uppsala Sweden
Department of Internal Medicine Hematology Oncology Goethe University Frankfurt Germany
Department of Laboratory Medicine Medical University of Vienna Vienna Austria
Department of Medical Genetics NHS Grampian Aberdeen UK
Department of Molecular Haematology Yorkhill NHS Trust Glasgow UK
Division of Pathology Rikshospital Oslo University Hospital Oslo Norway
Genetics Department Institute of Experimental Medicine Istanbul University Istanbul Turkey
Haematology Department Belfast City Hospital Belfast UK
Haematology Research Laboratory Biomedical Research Foundation Academy of Athens Athens Greece
Hematology Department and HCT Unit G Papanicolaou Hospital Thessaloniki Greece
Hematology Department Jagiellonian University Krakow Poland
Hematopathology Unit Hospital Clinic IDIBAPS Barcelona Spain
HMDS Leeds Institute of Oncology St James's University Hospital Leeds UK
Hungarian National Blood Transfusion Service Budapest Hungary
Imperial Molecular Pathology Centre for Haematology Imperial College London London UK
Institute of Hematology and Blood Transfusion Prague Czech Republic
Lab Hematologia Hospital de la Santa Creu i Sant Pau Barcelona Spain
Laboratoire d'hématologie CHU Lille Lille France
Laboratory for Molecular Haemato Oncology Kings College Hospital London UK
Laboratory of Hematology Sheba Medical Center Tel Hashomer Israel
Medical Genetics Department Erasme Hospital Brussels Belgium
Molecular Diagnostics Laboratory Department of Hematology University Hospital Bern Bern Switzerland
Molecular Diagnostics The Royal Marsden NHS Foundation Trust Sutton UK
Molecular Haematology Bristol Royal Infirmary Bristol UK
Molecular Oncology Diagnostics Unit Guy's Hospital London UK
Molecular Pathology University Hospitals Southampton NHS Foundation Trust Southampton UK
National Genetics Reference Laboratory Salisbury District Hospital Salisbury UK
Regional Genetics Laboratory Birmingham Women's NHS Foundation Trust Birmingham UK
Sheffield Diagnostic Genetics Service Sheffield Children's NHS Foundation Trust Sheffield UK
Turku University Hospital TYKSLAB Laboratory of Molecular Genetics Turku Finland
United Laboratories of Tartu University Hospitals Tartu Estonia
VU Medical Centre Department of Haematology Amsterdam The Netherlands
Zobrazit více v PubMed
Cross NC. Standardisation of molecular monitoring for chronic myeloid leukaemia. Best Pract Res Clin Haematol. 2009;22:355–365. PubMed
Press RD, Kamel-Reid S, Ang D. BCR–ABL1 RT-qPCR for monitoring the molecular response to tyrosine kinase inhibitors in chronic myeloid leukemia. J Mol Diagn. 2013;15:565–576. PubMed
Branford S, Prime J. Chronic myelogenous leukemia: monitoring response to therapy. Curr Hematol Malig Rep. 2011;6:75–81. PubMed
Baccarani M, Deininger MW, Rosti G, Hochhaus A, Soverini S, Apperley JF, et al. European LeukemiaNet recommendations for the management of chronic myeloid leukemia. Blood. 2013;122:872–884. PubMed PMC
Gabert J, Beillard E, van der Velden VH, Bi W, Grimwade D, Pallisgaard N, et al. Standardization and quality control studies of 'real-time' quantitative reverse transcriptase polymerase chain reaction of fusion gene transcripts for residual disease detection in leukemia—a Europe Against Cancer program. Leukemia. 2003;17:2318–2357. PubMed
Foroni L, Wilson G, Gerrard G, Mason J, Grimwade D, White HE, et al. Guidelines for the measurement of BCR–ABL1 transcripts in chronic myeloid leukaemia. Br J Haematol. 2011;153:179–190. PubMed
Zhang T, Grenier S, Nwachukwu B, Wei C, Lipton JH, Kamel-Reid S, et al. Inter-laboratory comparison of chronic myeloid leukemia minimal residual disease monitoring: summary and recommendations. J Mol Diagn. 2007;9:421–430. PubMed PMC
Hughes T, Deininger M, Hochhaus A, Branford S, Radich J, Kaeda J, et al. Monitoring CML patients responding to treatment with tyrosine kinase inhibitors: review and recommendations for harmonizing current methodology for detecting BCR–ABL transcripts and kinase domain mutations and for expressing results. Blood. 2006;108:28–37. PubMed PMC
Branford S, Fletcher L, Cross NC, Muller MC, Hochhaus A, Kim DW, et al. Desirable performance characteristics for BCR–ABL measurement on an international reporting scale to allow consistent interpretation of individual patient response and comparison of response rates between clinical trials. Blood. 2008;112:3330–3338. PubMed
White HE, Matejtschuk P, Rigsby P, Gabert J, Lin F, Lynn Wang Y, et al. Establishment of the first World Health Organization International Genetic Reference Panel for quantitation of BCR–ABL mRNA. Blood. 2010;116:e111–e117. PubMed
White HE, Hedges J, Bendit I, Branford S, Colomer D, Hochhaus A, et al. Establishment and validation of analytical reference panels for the standardization of quantitative BCR–ABL1 measurements on the international scale. Clin Chem. 2013;59:938–948. PubMed
Hughes TP, Kaeda J, Branford S, Rudzki Z, Hochhaus A, Hensley ML, et al. Frequency of major molecular responses to imatinib or interferon alfa plus cytarabine in newly diagnosed chronic myeloid leukemia. N Engl J Med. 2003;349:1423–1432. PubMed
Muller MC, Cross NC, Erben P, Schenk T, Hanfstein B, Ernst T, et al. Harmonization of molecular monitoring of CML therapy in Europe. Leukemia. 2009;23:1957–1963. PubMed
Saglio G, Kim DW, Issaragrisil S, le Coutre P, Etienne G, Lobo C, et al. Nilotinib versus imatinib for newly diagnosed chronic myeloid leukemia. N Engl J Med. 2010;362:2251–2259. PubMed
Kantarjian H, Shah NP, Hochhaus A, Cortes J, Shah S, Ayala M, et al. Dasatinib versus imatinib in newly diagnosed chronic-phase chronic myeloid leukemia. N Engl J Med. 2010;362:2260–2270. PubMed
Cross NC, White HE, Muller MC, Saglio G, Hochhaus A. Standardized definitions of molecular response in chronic myeloid leukemia. Leukemia. 2012;26:2172–2175. PubMed
Hehlmann R, Muller MC, Lauseker M, Hanfstein B, Fabarius A, Schreiber A, et al. Deep molecular response is reached by the majority of patients treated with imatinib, predicts survival, and is achieved more quickly by optimized high-dose imatinib: results from the randomized CML-study IV. J Clin Oncol. 2014;32:415–423. PubMed
Beillard E, Pallisgaard N, van der Velden VH, Bi W, Dee R, van der Schoot E, et al. Evaluation of candidate control genes for diagnosis and residual disease detection in leukemic patients using 'real-time' quantitative reverse-transcriptase polymerase chain reaction (RQ-PCR)—a Europe against cancer program. Leukemia. 2003;17:2474–2486. PubMed
Deprez L, Mazoua S, Corbisier P, Trapmann S, Schimmel H, White H, et al. The certification of the copy number concentration of solutions of plasmid DNA containing a BCR–ABL b3a2 transcript fragment. Certified reference material: ERM-AD623a, ERM-AD623b, ERM-AD623c, ERM-AD623d, ERM-AD623e ERM-AD623f Luxembourg: Publications Office of the European Union; 2012. Report number EUR 25248; ISBN 978-92-79-23343-2. 2012.
Joint Committee for Guides in Metrology. Evaluation of measurement data: Guide to expression of uncertainty in measurement (GUM) http://www.bipm.org/utils/common/documents/jcgm/JCGM_100_2008_E.pdf . 2008
Linsinger TP, Pauwels J, Lamberty A, Schimmel HG, van der Veen AM, Siekmann L, et al. Estimating the uncertainty of stability for matrix CRMs. Fresenius J Anal Chem. 2001;370:183–188. PubMed
Muller MC, Erben P, Saglio G, Gottardi E, Nyvold CG, Schenk T, et al. Harmonization of BCR–ABL mRNA quantification using a uniform multifunctional control plasmid in 37 international laboratories. Leukemia. 2008;22:96–102. PubMed
van der Velden VH, Hochhaus A, Cazzaniga G, Szczepanski T, Gabert J, van Dongen JJ, et al. Detection of minimal residual disease in hematologic malignancies by real-time quantitative PCR: principles, approaches, and laboratory aspects. Leukemia. 2003;17:1013–1034. PubMed
Jennings LJ, Smith FA, Halling KC, Persons DL, Kamel-Reid S. Molecular Oncology Resource Committee of the College of American P. Design and analytic validation of BCR–ABL1 quantitative reverse transcription polymerase chain reaction assay for monitoring minimal residual disease. Arch Pathol Lab Med. 2012;136:33–40. PubMed
International external quality assurance of JAK2 V617F quantification