Whole genome sequencing and phylogenetic analysis of feline anelloviruses
Jazyk angličtina Země Nizozemsko Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
25724090
DOI
10.1016/j.meegid.2015.02.015
PII: S1567-1348(15)00058-1
Knihovny.cz E-zdroje
- Klíčová slova
- Anelloviruses, Cats, Genome sequencing, Prevalence,
- MeSH
- fylogeneze MeSH
- genom virový genetika MeSH
- infekce DNA virem epidemiologie veterinární virologie MeSH
- kočky virologie MeSH
- nemoci koček epidemiologie virologie MeSH
- polymerázová řetězová reakce veterinární MeSH
- prevalence MeSH
- Torque teno virus genetika MeSH
- virové proteiny genetika MeSH
- zvířata MeSH
- Check Tag
- kočky virologie MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Česká republika epidemiologie MeSH
- Názvy látek
- ORF1 protein, TT virus MeSH Prohlížeč
- virové proteiny MeSH
Torque teno felis virus (FcTTV) was detected in the cat population in the Czech Republic. A total of 110 serum samples were tested by a nested PCR technique using specific primers, situated in the highly conserved untranslated region of the virus genome. The frequency of feline TT virus in the Czech Republic was found to be 33.63%. Sequencing of PCR product from several virus strains showed that all of them are closely related and belong to the same virus species. Whole genome sequencing of three strains was performed to compare overall genetic heterogeneity of feline TT viruses. One of these three strains showed more that 10% difference at the nucleotide level. Furthermore we didn't find any correlation between FcTTV infection and sex or health status of examined animals.
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