• This record comes from PubMed

Isolation of nuclear microsatellite markers for Cyperus fuscus (Cyperaceae)

. 2015 Nov ; 3 (11) : . [epub] 20151104

Status PubMed-not-MEDLINE Language English Country United States Media electronic-ecollection

Document type Journal Article

Grant support
P 24558 Austrian Science Fund FWF - Austria

PREMISE OF THE STUDY: Microsatellite markers were characterized in the extremely specialized ephemeral wetland plant species Cyperus fuscus (Cyperaceae). The markers will be used for studying population genetics in natural vs. anthropogenic habitats, on a European scale, and the role of the soil seed bank in the life cycle of this ephemeral species. METHODS AND RESULTS: Twenty-one microsatellite loci were established and scored in two populations, with mean number of alleles of 2.6 and 2.9 and mean expected heterozygosity of 0.405 and 0.470, respectively. Forty-four additional loci with the number of alleles ranging from one to four (mean = 2.1) were successfully amplified in seven individuals. CONCLUSIONS: The novel microsatellite markers will be useful for studying the genetic structure of populations of this ephemeral plant as well as their seed bank.

See more in PubMed

Brownstein M. J., Carpten J. D., Smith J. R. 1996. Modulation of non-templated nucleotide addition by PubMed

Doležel J., Bartoš J., Voglmayr H., Greilhuber J. 2003. Nuclear DNA content and genome size of trout and human. Cytometry Part A 51A: 127–128. PubMed

Excoffier L., Lischer H. E. L. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10: 564–567. PubMed

Faircloth B. C. 2008. MSATCOMMANDER: Detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources 8: 92–94. PubMed

Holleley C. E., Geerts P. 2009. Multiplex Manager 1.0: A cross-platform computer program that plans and optimizes multiplex PCR. BioTechniques 46: 511–517. PubMed

Krahulcová A. 2003. Chromosome numbers in selected monocotyledons (Czech Republic, Hungary, and Slovakia). Preslia 75: 97–113.

Leck M. A. 1989. Wetland seed banks.

Roalson E. H. 2008. A synopsis of chromosome number variation in the Cyperaceae. Botanical Review 74: 209–393.

Rozen S., Skaletsky H. 1999. Primer3 on the WWW for general users and for biologist programmers. PubMed

Schuelke M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology 18: 233–234. PubMed

Von Lampe M. 1996. Wuchsform, Wuchsrhythmus und Verbreitung der Arten der Zwergbinsengesellschaften. Dissertationes Botanicae, vol. 266. J. Cramer, Berlin, Germany.

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...