Neobodonids are dominant kinetoplastids in the global ocean
Language English Country England, Great Britain Media print
Document type Journal Article, Research Support, Non-U.S. Gov't
- MeSH
- Biodiversity MeSH
- Phylogeny MeSH
- Kinetoplastida classification genetics MeSH
- Oceans and Seas MeSH
- Plankton genetics MeSH
- DNA, Ribosomal genetics MeSH
- RNA, Ribosomal, 18S genetics MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Oceans and Seas MeSH
- Names of Substances
- DNA, Ribosomal MeSH
- RNA, Ribosomal, 18S MeSH
Kinetoplastid flagellates comprise basal mostly free-living bodonids and derived obligatory parasitic trypanosomatids, which belong to the best-studied protists. Due to their omnipresence in aquatic environments and soil, the bodonids are of ecological significance. Here, we present the first global survey of marine kinetoplastids and compare it with the strikingly different patterns of abundance and diversity in their sister clade, the diplonemids. Based on analysis of 18S rDNA V9 ribotypes obtained from 124 sites sampled during the Tara Oceans expedition, our results show generally low to moderate abundance and diversity of planktonic kinetoplastids. Although we have identified all major kinetoplastid lineages, 98% of kinetoplastid reads are represented by neobodonids, namely specimens of the Neobodo and Rhynchomonas genera, which make up 59% and 18% of all reads, respectively. Most kinetoplastids have small cell size (0.8-5 µm) and tend to be more abundant in the mesopelagic as compared to the euphotic zone. Some of the most abundant operational taxonomic units have distinct geographical distributions, and three novel putatively parasitic neobodonids were identified, along with their potential hosts.
CEA GENOSCOPE Institut François Jacob 2 rue Gaston Crémieux 91057 Evry France
CNRS UMR 8030 CP5706 Evry France
Faculty of Science University of South Bohemia České Budějovice Czech Republic
Institute of Parasitology Biology Centre Czech Academy of Sciences České Budějovice Czech Republic
Life Science Research Centre Faculty of Science University of Ostrava Ostrava Czech Republic
Sorbonne Universités Paris France
References provided by Crossref.org
CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology
Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses
EukRef-excavates: seven curated SSU ribosomal RNA gene databases
Gene fragmentation and RNA editing without borders: eccentric mitochondrial genomes of diplonemids