Gene target selection for loop-mediated isothermal amplification for rapid discrimination of Treponema pallidum subspecies

. 2018 Apr ; 12 (4) : e0006396. [epub] 20180412

Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection

Typ dokumentu hodnotící studie, časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid29649256

We show proof of concept for gene targets (polA, tprL, and TP_0619) that can be used in loop-mediated isothermal amplification (LAMP) assays to rapidly differentiate infection with any of the three Treponema pallidum subspecies (pallidum (TPA), pertenue (TPE), and endemicum (TEN)) and which are known to infect humans and nonhuman primates (NHPs). Four TPA, six human, and two NHP TPE strains, as well as two human TEN strains were used to establish and validate the LAMP assays. All three LAMP assays were highly specific for the target DNA. Amplification was rapid (5-15 min) and within a range of 10E+6 to 10E+2 of target DNA molecules. Performance in NHP clinical samples was similar to the one seen in human TPE strains. The newly designed LAMP assays provide proof of concept for a diagnostic tool that enhances yaws clinical diagnosis. It is highly specific for the target DNA and does not require expensive laboratory equipment. Test results can potentially be interpreted with the naked eye, which makes it suitable for the use in remote clinical settings.

Zobrazit více v PubMed

Mitjà O, Asiedu K, Mabey D. Yaws. Lancet. 2013;381(9868):763–73. Epub 2013/02/19. PubMed

Marks M, Mitjà O, Solomon AW, Asiedu KB, Mabey DC. Yaws. Br Med Bull. 2015;113(1):91–100. Epub 2014/12/20. doi: 10.1093/bmb/ldu037 PubMed DOI PMC

Asiedu K, Fitzpatrick C, Jannin J. Eradication of yaws: historical efforts and achieving WHO’s 2020 target. PLoS Negl Trop Dis. 2014;8(9):e3016 doi: 10.1371/journal.pntd.0003016 PubMed DOI PMC

Marks M, Mitjà O, Vestergaard LS, Pillay A, Knauf S, Chen CY, et al. Challenges and key research questions for yaws eradication. Lancet Infect Dis. 2015;15(10):1220–5. doi: 10.1016/S1473-3099(15)00136-X PubMed DOI PMC

Asiedu K, Amouzou B, Dhariwal A, Karam M, Lobo D, Patnaik S, et al. Yaws eradication: past efforts and future perspectives. Bull World Health Organ. 2008;86(7):499–A. Epub 2008/08/02. doi: 10.2471/BLT.08.055608 PubMed DOI PMC

Fitzpatrick C, Asiedu K, Jannin J. Where the Road Ends, Yaws Begins? The Cost-effectiveness of Eradication versus More Roads. PLoS Negl Trop Dis. 2014;8(9):e3165 doi: 10.1371/journal.pntd.0003165 PubMed DOI PMC

McGill MA, Edmondson DG, Carroll JA, Cook RG, Orkiszewski RS, Norris SJ. Characterization and serologic analysis of the PubMed DOI PMC

Brinkman MB, McGill MA, Pettersson J, Rogers A, Matejková P, Šmajs D, et al. A novel PubMed DOI PMC

Marks M, Yin YP, Chen XS, Castro A, Causer L, Guy R, et al. Metaanalysis of the performance of a combined treponemal and nontreponemal rapid diagnostic test for syphilis and yaws. Clin Infect Dis. 2016;63(5):627–33. doi: 10.1093/cid/ciw348 PubMed DOI PMC

Mitjà O, Lukehart SA, Pokowas G, Moses P, Kapa A, Godornes C, et al. PubMed DOI

Gibbs S. Skin disease and socioeconomic conditions in rural Africa: Tanzania. Int J Dermatol. 1996;35(9):633–9. Epub 1996/09/01. doi: 10.1111/j.1365-4362.1996.tb03687.x . PubMed DOI

Klegarth AR, Ezeonwu CA, Rompis A, Lee BPY, Aggimarangsee N, Chalise M, et al. Survey of treponemal infections in free-ranging and captive macaques, 1999–2012. Emerg Infect Dis. 2017;23(5):816–9. doi: 10.3201/eid2305.161838 PubMed DOI PMC

Knauf S, Liu H, Harper KN. Treponemal infection in nonhuman primates as possible reservoir for human yaws. Emerg Infect Dis. 2013;19(12):2058–60. Epub 2013/11/28. doi: 10.3201/eid1912.130863 PubMed DOI PMC

Knauf S, Gogarten J, Schuenemann VJ, De Nys HM, Duex A, Strouhal M, et al. African nonhuman primates are infected with the yaws bacterium PubMed DOI PMC

Zobaníková M, Strouhal M, Mikalová L, Čejková D, Ambrozova L, Pospíšilová P, et al. Whole genome sequence of the PubMed DOI PMC

Fribourg-Blanc A, Mollaret HH. Natural treponematosis of the African primate. Primates Med. 1969;3(0):113–21. Epub 1969/01/01. . PubMed

Smith JL, David NJ, Indgin S, Israel CW, Levine BM, Justice J Jr., et al. Neuro-ophthalmological study of late yaws and pinta. II. The Caracas project. Br J Vener Dis. 1971;47(4):226–51. Epub 1971/08/01. PubMed PMC

Pahil S, Goyal K. Rapid molecular diagnosis of chronic skin ulcers. Lancet Glob Health. 2917;2: e385. PubMed

Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28(12):E63 PubMed PMC

Mori Y, Notomi T. Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J Infect Chemother. 2009;15(2):62–9. doi: 10.1007/s10156-009-0669-9 . PubMed DOI PMC

Yoshida A, Nagashima S, Ansai T, Tachibana M, Kato H, Watari H, et al. Loop-mediated isothermal amplification method for rapid detection of the periodontopathic bacteria PubMed DOI PMC

Liu H, Rodes B, Chen CY, Steiner B. New tests for syphilis: rational design of a PCR method for detection of PubMed DOI PMC

Šmajs D, Zobaníková M, Strouhal M, Čejková D, Dugan-Rocha S, Pospíšilová P, et al. Complete genome sequence of PubMed DOI PMC

Graves S, Downes J. Experimental infection of man with rabbit-virulent PubMed PMC

Centurion-Lara A, Giacani L, Godornes C, Molini BJ, Brinck Reid T, Lukehart SA. Fine analysis of genetic diversity of the PubMed DOI PMC

Godornes C, Giacani L, Barry A, Mitjà O, Lukehart S (2017) Development of a multilocus sequence typing (MLST) scheme for PubMed DOI PMC

Knauf S, Batamuzi EK, Mlengeya T, Kilewo M, Lejora IA, Nordhoff M, et al. PubMed DOI

Iwamoto T, Sonobe T, Hayashi K. Loop-mediated isothermal amplification for direct detection of PubMed DOI PMC

Aryan E, Makvandi M, Farajzadeh A, Huygen K, Bifani P, Mousavi SL, et al. A novel and more sensitive loop-mediated isothermal amplification assay targeting IS6110 for detection of PubMed DOI

Das A, Babiuk S, McIntosh MT. Development of a loop-mediated isothermal amplification assay for rapid detection of capripoxviruses. J Clin Microbiol. 2012;50(5):1613–20. doi: 10.1128/JCM.06796-11 PubMed DOI PMC

Sarkodie F, Hassall O, Owusu-Dabo E, Owusu-Ofori S, Bates I, Bygbjerg IC, et al. Syphilis screening practices in blood transfusion facilities in Ghana. Int J Infect Dis. 2016;43:90–4. doi: 10.1016/j.ijid.2015.12.020 . PubMed DOI

Vallely A, Page A, Dias S, Siba P, Lupiwa T, Law G, et al. The prevalence of sexually transmitted infections in Papua New Guinea: a systematic review and meta-analysis. PLoS One. 2010;5(12):e15586 doi: 10.1371/journal.pone.0015586 PubMed DOI PMC

Giacani L, Lukehart SA. The endemic treponematoses. Clin Microbiol Rev. 2014;27(1):89–115. Epub 2014/01/08. doi: 10.1128/CMR.00070-13 PubMed DOI PMC

Liu N, Zou D, Dong D, Yang Z, Ao D, Liu W, et al. Development of a multiplex loop-mediated isothermal amplification method for the simultaneous detection of PubMed DOI PMC

Tomita N, Mori Y, Kanda H, Notomi T. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc. 2008;3(5):877–82. doi: 10.1038/nprot.2008.57 . PubMed DOI

Chander Y, Koelbl J, Puckett J, Moser MJ, Klingele AJ, Liles MR, et al. A novel thermostable polymerase for RNA and DNA loop-mediated isothermal amplification (LAMP). Front Microbiol. 2014;5:395 doi: 10.3389/fmicb.2014.00395 PubMed DOI PMC

Marks M, Fookes M, Wagner J, Butcher R, Ghinai R, Sokana et al. (2017) Diagnostics for yaws eradication: insights from direct next generation sequencing of cutaneous strains of PubMed DOI PMC

Marks M, Mitjà O, Fitzpatrick C, Asiedu K, Solomon AW, Mabey DC, et al. Mathematical modeling of programmatic requirements for yaws eradication. Emerg Infect Dis. 2017;23(1):22–8. Epub 2016/12/17. doi: 10.3201/eid2301.160487 PubMed DOI PMC

Tipple C, Hanna MO, Hill S, Daniel J, Goldmeier D, McClure MO, et al. Getting the measure of syphilis: qPCR to better understand early infection. Sex Transm Infect. 2011;87(6):479–85. doi: 10.1136/sti.2011.049494 PubMed DOI PMC

Grange P, Mikalová L, Gaudin C, Strouhal M, Janier M, et al. PubMed

Noda AA, Grillová L, Lienhard R, Blanco O, Rodríguez I, et al. Bejel in Cuba: molecular identification of PubMed DOI

Ratnam S. The laboratory diagnosis of syphilis. Can J Infect Dis Med Microbiol. 2005;16(1):45–51. Epub 2007/12/27. PubMed PMC

Najít záznam

Citační ukazatele

Pouze přihlášení uživatelé

Možnosti archivace

Nahrávání dat ...