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Atypical URA5 gene restriction fragment length polymorphism banding profile in Cryptococcus neoformans strains

. 2019 Nov ; 64 (6) : 857-860. [epub] 20190408

Language English Country United States Media print-electronic

Document type Journal Article

Grant support
1/PB/2016/KNOW Project supported the by Wroclaw Centre of Biotechnology programme, The Leading National Research Centre (KNOW) for the years 2014-2018.

Links

PubMed 30963417
PubMed Central PMC6861435
DOI 10.1007/s12223-019-00699-y
PII: 10.1007/s12223-019-00699-y
Knihovny.cz E-resources

URA5-RFLP is one of the most widely used genotyping methods relating to Cryptococcus neoformans and C. gattii consensus genotype nomenclature. In order to identify a molecular type, this method uses a visual comparison of digested PCR products of tested and reference strains, therefore any anomaly in RFLP patterns of studied isolates makes recognition difficult or impossible. This report describes a strain of VNIV type showing an atypical URA5-RFLP pattern as well as a group of AD hybrids displaying the same anomaly. The atypical RFLP pattern is the result of a point mutation and emergence of a new restriction site. Emergence of the allele presenting a new banding pattern may lead to misidentification using the URA5-RFLP technique; the results of this study as well as the literature data may suggest the spread of the allele in the environment.

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