Sex-chrom, a database on plant sex chromosomes

. 2020 Sep ; 227 (6) : 1594-1604. [epub] 20200529

Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic

Typ dokumentu dopisy, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid32357248

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Ainsworth C, Crossley S, Buchanan-Wollaston V, Thangavelu M, Parker J. 1995. Male and female flowers of the dioecious plant sorrel show different patterns of MADS box gene expression. Plant Cell 7: 1583-1598.

Aryal R, Ming R. 2014. Sex determination in flowering plants: papaya as a model system. Plant Science 217: 56-62.

Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, Rice W, Valenzuela N. 2011. Are all sex chromosomes created equal? Trends in Genetics 27: 350-357.

Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R et al. 2014. Sex determination: why so many ways of doing it? PLoS Biology 12: e1001899.

Balounova V, Gogela R, Cegan R, Cangren P, Zluvova J, Safar J, Kovacova V, Bergero R, Hobza R, Vyskot B et al. 2019. Evolution of sex determination and heterogamety changes in section Otites of the genus Silene. Scientific Reports 9: 1045.

Barrett SCH. 2002. The evolution of plant sexual diversity. Nature Reviews Genetics 3: 274-284.

Bornmann L, Mutz R. 2015. Growth rates of modern science: a bibliometric analysis based on the number of publications and cited references. Journal of the Association for Information Science and Technology 66: 2215-2222.

Boucher LD, Manchester SR, Judd WS. 2003. An extinct genus of Salicaceae based on twigs with attached flowers, fruits, and foliage from the Eocene Green River Formation of Utah and Colorado, USA. American Journal of Botany 90: 1389-1399.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger Frédéric et al. 2017. Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell 171: 287-304.

Burt A, Bell G, Harvey PH. 1991. Sex differences in recombination. Journal of Evolutionary Biology 4: 259-277.

Caruso CM, Case AL, Bailey MF. 2012. The evolutionary ecology of cytonuclear interactions in angiosperms. Trends in Plant Science 17: 638-643.

Casimiro-Soriguer I, Buide ML, Narbona E. 2015. Diversity of sexual systems within different lineages of the genus Silene. AoB PLANTS 7: plv037.

Charlesworth B. 1996. The evolution of chromosomal sex determination and dosage compensation. Current Biology 6: 149-162.

Charlesworth D. 2015. Plant contributions to our understanding of sex chromosome evolution. New Phytologist 208: 52-65.

Charlesworth D. 2016. Plant sex chromosomes. Annual Review of Plant Biology 67: 397-420.

Charlesworth D. 2018. Mogens Westergaard's contributions to understanding sex chromosomes. Genetics 210: 1143-1149.

Charlesworth D. 2019. Young sex chromosomes in plants and animals. New Phytologist 224: 1095-1107.

Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG. 2018. UV chromosomes and haploid sexual systems. Trends in Plant Science 23: 794-807.

D’Ambrossio U, Alonso-Lifante MP, Barros K, Kovarik A, Mas de Xaxars G, Garcia S. 2017. B-chrom: a database on B-chromosomes of plants, animals and fungi. New Phytologist 216: 635-642.

Deakin JE, Potter S, O’Neill R, Ruiz-Herrera A, Cioffi MB, Eldridge MD, Fukui K, Marshall GravesJA, Griffin D, Grutzner F. 2019. Chromosomics: bridging the gap between genomes and chromosomes. Genes 10: 627.

Deng CL, Qin RY, Wang NN, Cao Y, Gao J, Gao WJ, Lu LD. 2012. Karyotype of asparagus by physical mapping of 45S and 5S rDNA by FISH. Journal of Genetics 91: 209-212.

Divashuk MG, Alexandrov OS, Kroupin PY, Karlov GI. 2011. Molecular cytogenetic mapping of Humulus lupulus sex chromosomes. Cytogenetic and Genome Research 134: 213-219.

Divashuk MG, Alexandrov OS, Razumova OV, Kirov IV, Karlov GI. 2014. Molecular cytogenetic characterization of the dioecious Cannabis sativa with an XY chromosome sex determination system. PLoS ONE 9: e85118.

Dwarka A, Ross Friedman CM, MacKay ME, Nelson D. 2011. Polymerase chain reaction identification of a female-specific genetic marker in Arceuthobium americanum (lodgepole pine dwarf mistletoe) and its implications for Arceuthobium sex determination. Botany-Botanique 89: 369-377.

Garcia S, Garnatje T, Kovařík A. 2012. Plant rDNA database: ribosomal DNA loci information goes online. Chromosoma 121: 389-394.

Garcia S, Galvez F, Gras A, Kovarik A, Garnatje T. 2014. Plant rDNA database: update and new features. Database 2014: bau063.

Garnatje T, Canela MA, Garcia S, Hidalgo O, Pellicer J, Sánchez-Jiménez I, Siljak-Yakovlev S, Vallès J. 2011. GSAD: A genome size in the Asteraceae database. Cytometry Part A 79A: 401-404.

Geraldes A, Hefer CA, Capron A, Kolosova N, Martinez-Nuñez F, Soolanayakanahally RY, Staton B, Guy RD, Douglas CJ, Cronk QCB. 2015. Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus). Molecular Ecology 24: 3243-3256.

Harkess A, Mercati F, Shan HY, Sunseri F, Falavigna A, Leebens-Mack J. 2015. Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis). New Phytologist 207: 883-892.

Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A et al. 2017. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications 8: 1279.

Hinnisdaels S, Lardon A, Barbacar N, Negrutiu I. 1997. A floral third whorl-specific marker gene in the dioecious species white campion is differentially expressed in mutants defective in stamen development. Plant Molecular Biology 35: 1009-1014.

Hobza R, Hudzieczek V, Kubat Z, Cegan R, Vyskot B, Kejnovsky E, Janousek B. 2018. Sex and the flower - developmental aspects of sex chromosome evolution. Annals of Botany 122: 1085-1101.

Hou J, Ye N, Zhang D, Chen Y, Fang L, Dai X, Yin T. 2015. Different autosomes evolved into sex chromosomes in the sister genera of Salix and Populus. Scientific Reports 5: 9076.

Hough J, Hollister JD, Wang W, Barrett SC, Wright SI. 2014. Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus. Proceedings of the National Academy of Sciences, USA 111: 7713-7718.

Howell EC, Armstrong SJ, Filatov DA. 2009. Evolution of neo-sex chromosomes in Silene diclinis. Genetics 182: 1109-1115.

Hudzieczek V, Cegan R, Cermak T, Bacovska N, Machalkova Z, Dolezal K, Plihalova L, Voytas D, Hobza R, Vyskot B. 2019. Agrobacterium rhizogenes-mediated transformation of a dioecious plant model Silene latifolia. New Biotechnology 48: 20-28.

Korpelainen H. 1998. Labile sex expression in plants. Biological Reviews 73: 157-180.

Kubat Z, Hobza R, Vyskot B, Kejnovsky E. 2008. Microsatellite accumulation on the Y chromosome in Silene latifolia. Genome 51: 350-356.

Kubat Z, Zluvova J, Vogel I, Kovacova V, Cermak T, Cegan R, Hobza R, Vyskot B, Kejnovsky E. 2014. Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome. New Phytologist 202: 662-678.

Lengerova M, Vyskot B. 2001. Sex chromatin and nucleolar analyses in Rumex acetosa L. Protoplasma 217: 147-153.

Lenormand T, Dutheil J. 2005. Recombination difference between sexes: a role for haploid selection (LD Hurst, Ed.). PLoS Biology 3: e63.

Macas J, Kejnovský E, Neumann P, Novák P, Koblížková A, Vyskot B. 2011. Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia. PLoS ONE 6: e27335.

Manchester SR, Judd WS, Handley B. 2006. Foliage and fruits of early poplars (Salicaceae: Populus ) from the Eocene of Utah, Colorado, and Wyoming. International Journal of Plant Sciences 167: 897-908.

Martin H, Carpentier F, Gallina S, Godé C, Schmitt E, Muyle A, Marais GAB, Touzet P. 2019. Evolution of young sex chromosomes in two dioecious sister plant species with distinct sex determination systems. Genome Biology and Evolution 11: 350-361.

Matsunaga S. 2006. Sex chromosome-linked genes in plants. Genes & Genetic Systems 81: 219-226.

Mayer SS, Charlesworth D. 1991. Cryptic dioecy in flowering plants. Trends in Ecology & Evolution 6: 320-325.

Mehra P, Kashyap S. 1984. Male and female meiosis in Cypripedium. Proceedings of the National Academy of Sciences, USA 50: 119-121.

Milet-Pinheiro P, Navarro DMAF, Dötterl S, Carvalho AT, Pinto CE, Ayasse M, Schlindwein C. 2015. Pollination biology in the dioecious orchid Catasetum uncatum: how does floral scent influence the behaviour of pollinators? Phytochemistry 116: 149-161.

Ming R, Bendahmane A, Renner SS. 2011. Sex chromosomes in land plants. Annual Review of Plant Biology 62: 485-514.

Ming R, Yu Q, Moore PH. 2007. Sex determination in papaya. Seminars in Cell & Developmental Biology 18: 401-408.

Mongeon P, Paul-Hus A. 2016. The journal coverage of Web of Science and Scopus: a comparative analysis. Scientometrics 106: 213-228.

Muyle A, Käfer J, Zemp N, Mousset S, Picard F, Marais GAB. 2016. SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms. Genome Biology and Evolution 8: 2530-2543.

Noda S. 1975. Achiasmate meiosis in the Fritillaria japonica group. Heredity 34: 373-380.

Perrin N. 2009. Sex reversal: a fountain of youth for sex chromosomes? Evolution 63: 3043-3049.

Phillips D, Jenkins G, Macaulay M, Nibau C, Wnetrzak J, Fallding D, Colas I, Oakey H, Waugh R, Ramsay L. 2015. The effect of temperature on the male and female recombination landscape of barley. New Phytologist 208: 421-429.

Prentout D, Razumova O, Rhoné B, Badouin H, Henri H, Feng C, Kafer J,Karlov G, Marais GA. 2020. Anefficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa. Genome Research 30: 164-172. doi: https://doi.org/10.1101/24721324

Pucholt P, Wright AE, Conze LL, Mank JE, Berlin S. 2017. Recent sex chromosome divergence despite ancient dioecy in the willow Salix viminalis. Molecular Biology and Evolution 34: 1991-2001.

Puterova J, Kubat Z, Kejnovsky E, Jesionek W, Cizkova J, Vyskot B, Hobza R. 2018. The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons. BMC Genomics 19: 153.

Renner SS. 2014. The relative and absolute frequencies of angiosperm sexual systems: dioecy, monoecy, gynodioecy, and an updated online database. American Journal of Botany 101: 1588-1596.

Rice A, Glick L, Abadi S, Einhorn M, Kopelman NM, Salman-Minkov A, Mayzel J, Chay O, Mayrose I. 2015. The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers. New Phytologist 206: 19-26.

Rodríguez Lorenzo JL, Hobza R, Vyskot B. 2018. DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia. BMC Genomics 19: 540.

Russell JRW, Pannell JR. 2015. Sex determination in dioecious Mercurialis annua and its close diploid and polyploid relatives. Heredity 114: 262-271.

Sandler G, Beaudry FEG, Barrett SCH, Wright SI. 2018. The effects of haploid selection on Y chromosome evolution in two closely related dioecious plants. Evolution Letters 2: 368-377.

Saumitou-Laprade P, Cuguen J, Vernet P. 1994. Cytoplasmic male sterility in plants: molecular evidence and the nucleocytoplasmic conflict. Trends in Ecology and Evolution 9: 431-435.

Scharmann M, Grafe TU, Metali F, Widmer A. 2019. Sex is determined by XY chromosomes across the radiation of dioecious Nepenthes pitcher plants. Evolution Letters 3: 586-597.

Singh RB, Smith BW. 1971. The mechanism of sex determination in Rumex acetosella. Theoretical and Applied Genetics 41: 360-364.

Slancarova V, Zdanska J, Janousek B, Talianova M, Zschach C, Zluvova J, Siroky J, Kovacova V, Blavet H, Danihelka J et al. 2013. Evolution of sex determination systems with heterogametic males and females in Silene. Evolution 67: 3669-3677.

Smith BW. 1963. The mechanism of sex determination in Rumex hastatulus. Genetics 48: 1265.

Sochorová J, Garcia S, Gálvez F, Symonová R, Kovarik A. 2018. Evolutionary trends in animal ribosomal DNA loci: introduction to a new online database. Chromosoma 127: 141-150.

Steflova P, Hobza R, Vyskot B, Kejnovsky E. 2014. Strong accumulation of chloroplast DNA in the Y chromosomes of Rumex acetosa and Silene latifolia. Cytogenetic and Genome Research 142: 59-65.

Tennessen JA, Govindarajulu R, Liston A, Ashman T. 2016. Homomorphic ZW chromosomes in a wild strawberry show distinctive recombination heterogeneity but a small sex-determining region. New Phytologist 211: 1412-1423.

Tennessen JA, Wei N, Straub SCK, Govindarajulu R, Liston A, Ashman TL. 2018. Repeated translocation of a gene cassette drives sex-chromosome turnover in strawberries. PLoS Biology 16: e2006062.

The Tree of Sex Consortium. 2014. Tree of sex: a database of sexual systems. Scientific Data 1: 140015.

Veltsos P, Cossard G, Beaudoing E, Beydon G, Savova Bianchi D, Roux C, González-Martínez C, González-Martínez SC, Pannell JR. 2018. Size and content of the sex-determining region of the Y chromosome in dioecious Mercurialis annua, a plant with homomorphic sex chromosomes. Genes 9: 277.

Vitales D, D’Ambrosio U, Gálvez F, Kovařík A, Garcia S. 2017. Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes. Plant Systematics and Evolution 303: 1115-1121.

Vitales D, Fernández P, Garnatje T, Garcia S. 2019. Progress in the study of genome size evolution in Asteraceae: analysis of the last update. Database 2019: baz098.

Wang J, Na J, Yu Q, Gschwend AR, Han J, Zeng F, Aryal R, VanBuren R, Murray JE, Zhang W et al. 2012. Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution. Proceedings of the National Academy of Sciences, USA 109: 13710-13715.

Westergaard M. 1958. The mechanism of sex determination in dioecious flowering plants. Advances in Genetics 9: 217-281.

Wu M, Moore RC. 2015. The evolutionary tempo of sex chromosome degradation in Carica papaya. Journal of Molecular Evolution 80: 265-277.

Zhang H, Zhang R, Yang X, Gu KJ, Chen W, Chang Y, Qiwu X, Liu Q, Qin Y, Hong X et al. 2019. Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba. BioRxiv. doi: 10.1101/517946.

Zhou QX, Gu ZJ. 2001. Karyomorphology of Podocarpuss s.l. in China and its systematic significance. Caryologia 54: 121-127.

Zhou R, Macaya-Sanz D, Rodgers-Melnick E, Carlson CH, Gouker FE, Evans LM, Schmutz J, Jenkins JW, Yan J, Tuskan GA et al. 2018. Characterization of a large sex determination region in Salix purpurea L. (Salicaceae). Molecular Genetics and Genomics 293: 1437-1452.

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