Hidden in Plain Sight: Comprehensive Molecular Phylogeny of Keroplatidae and Lygistorrhinidae (Diptera) Reveals Parallel Evolution and Leads to a Revised Family Classification
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic
Typ dokumentu časopisecké články
Grantová podpora
Institutional support for the University of Ostrava
Ministry of Education, Youth and Sports of the Czech Republic
SGS28/PrF/2014, SGS28/PrF/2015, SGS28/PrF/16, SGS19/PrF/17
University of Ostrava
IUT21-1
Estonian Ministry of Education and Research
PubMed
32512775
PubMed Central
PMC7349917
DOI
10.3390/insects11060348
PII: insects11060348
Knihovny.cz E-zdroje
- Klíčová slova
- Keroplatidae, Lygistorrhinidae, Sciaroidea, classification, phylogenetics, predaceous fungus gnats,
- Publikační typ
- časopisecké články MeSH
We provide the first molecular phylogeny of Keroplatidae and Lygistorrhinidae, families of fungus gnats (Diptera: Bibionomorpha: Sciaroidea). Phylogenies reconstructed by Maximum Likelihood and Bayesian methods, based on four nuclear and four mitochondrial gene markers (5106 base pairs) sequenced for 75 genera and 105 species, show Keroplatidae as monophyletic only with the family Lygistorrhinidae included, herewith treated as the subfamily Lygistorrhininae stat. nov. The subfamily Arachnocampinae is retained in the family, although lowering its overall support. An early branching clade, comprising species of Platyura Meigen, 1803 and Paleoplatyura melanderi Fisher, 1941, forms subfamily Platyurinae Loew, 1850 stat. nov. The subfamilies Sciarokeroplatinae and Macrocerinae grouped together with three genera considered here as Keroplatidae incertae sedis. Subfamily Lygistorrhininae forms a sister clade to subfamily Keroplatinae, both retained monophyletic with high support. The traditional division of the subfamily Keroplatinae into the tribes Orfeliini and Keroplatini appears as outdated, resting largely on adaptive characters prone to parallel evolution. We find support for an alternative tribe corresponding to the Cloeophoromyia-Asindulum genus group, but a tribal reclassification of the Keroplatinae is left for future studies. The genus Heteropterna Skuse, 1888 is considered as identical with Ctenoceridion Matile, 1972 syn. nov.
Department of Life Sciences Natural History Museum Cromwell Road London SW7 5BD UK
Department of Natural Sciences National Museums Scotland Chambers Street Edinburgh EH1 1JF UK
Zobrazit více v PubMed
Ševčík J., Kaspřák D., Mantič M., Fitzgerald S., Ševčíková T., Tóthová A., Jaschhof M. Molecular phylogeny of the megadiverse insect infraorder Bibionomorpha sensu lato (Diptera) PeerJ. 2016;4:e2563. doi: 10.7717/peerj.2563. PubMed DOI PMC
Matile L. Recherches sur la systématique et lévolution des Keroplatidae: Diptera, Mycetophiloidea. Mem. Du Mus. Natl. D’histoire Nat. Ser. A Zool. 1990;148:1–682.
Evenhuis N. Catalog of The Keroplatidae of The World (Insecta: Diptera) Bishop Museum Press; Honolulu, HI, USA: 2006.
Ševčík J., Mantič M., Blagoderov V. Two new genera of Keroplatidae (Diptera), with an updated key to the World genera of Keroplatini. Acta Entomol. Musei Natl. Pragae. 2015;55:387–399.
Kurina O., Mantič M., Ševčík J. A Remarkable New Genus of Keroplatidae (Insecta, Diptera) from the Afrotropical Region, with DNA Sequence Data. Afr. Invertebr. 2017;58:93–105. doi: 10.3897/afrinvertebr.58.12655. DOI
Fungus Gnats Online. [(accessed on 22 April 2020)]; Available online: http://sciaroidea.info/
Evenhuis N. Catalogue of The Fossil Flies of the World (Insecta: Diptera) Backhuys; Leiden, The Netherlands: 1994.
Papp L., Ševčík J. Sciarokeroplatinae, a new subfamily of Keroplatidae (Diptera) Acta Zool. Acad. Sci. Hung. 2005;51:113–123. doi: 10.11646/zootaxa.2221.1.4. DOI
Blagoderov V., Grimaldi D. Fossil Sciaroidea (Diptera) In Cretaceous Ambers, Exclusive of Cecidomyiidae, Sciaridae, and Keroplatidae. Am. Mus. Novit. 2004;3433 doi: 10.1206/0003-0082(2004)433<0001:FSDICA>2.0.CO;2. DOI
Grimaldi D., Amorim D.D.S., Blagoderov V. The Mesozoic Family Archizelmiridae (Diptera: Insecta) J. Paleontol. 2003;77:368–381. doi: 10.1017/S0022336000043705. DOI
Baker C., Graham G., Scott K., Cameron S., Yeates D., Merritt D. Distribution and Phylogenetic Relationships of Australian Glow-Worms Arachnocampa (Diptera, Keroplatidae) Mol. Phylogenet. Evol. 2008;48:506–514. doi: 10.1016/j.ympev.2008.04.037. PubMed DOI
Saigusa T. Rare Sciaroid Genera from the Temperate east Palaearctic Region (Diptera: Sciaroidea) Jpn. J. Syst. Entomol. 2018;24:163–173.
Bechev D. Flower visitation of fungus gnats from the genera Antlemon, Asindulum and Macrorrhyncha (Diptera: Keroplatidae): Published data and a new record. ZooNotes. 2010;7:1–3.
Mantič M., Ševčík J. Macrocera rohaceki sp. nov. and other interesting records of Keroplatidae (Diptera) from southern and central Europe, with DNA sequence data. Acta Entomol. Musei Natl. Pragae. 2017;57:751–764. doi: 10.1515/aemnp-2017-0098. DOI
Reiter N., Freestone M., Brown G., Peakall R. Pollination by sexual deception of fungus gnats (Keroplatidae and Mycetophilidae) in two clades of Pterostylis (Orchidaceae) Bot. J. Linn. Soc. 2019;190:101–116. doi: 10.1093/botlinnean/boz009. DOI
Matile L. The Origin of Biodiversity in Insects: Phylogenetic Tests of Evolutionary Scenarios. 2nd ed. Volume 173. Memoires du Museum National d’Histoire Naturelle Seri, A Zoologie; Paris, France: 1997. Phylogeny and evolution of the larval diet in the Sciaroidea (Diptera, Bibionomorpha) since the Mesozoic; pp. 273–303.
Sharpe M.L., Dearden P.K., Gimenez G., Krause K.L. Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes. BMC Genom. 2015;16:825. doi: 10.1186/s12864-015-2006-2. PubMed DOI PMC
Falaschi R., Amaral D., Santos I., Domingos A., Johnson G., Martins A., Viroomal I., Pompéia S., Mirza J., Oliveira A., et al. Neoceroplatus betaryiensis nov. sp. (Diptera: Keroplatidae) is the first record of a bioluminescent fungus-gnat in South America. Sci. Rep. 2019;9 doi: 10.1038/s41598-019-47753-w. PubMed DOI PMC
Aiello A., Jolivet P. Myrmecophily in Keroplatidae (Diptera: Sciaroidea) J. N. Y. Entomol. Soc. 1996;104:226–230.
Chandler P.J., Matile L. A new species of Platyceridion Tollet (Diptera, Keroplatidae) with a larva predatory in ant infested internodes of Humboldtia laurifolia Vahl. Studia Dipterol. 1998;5:163–173.
Chandler P.J., Pijnakker J. Tropical fungus gnats established in nurseries in The Netherlands (Diptera: Keroplatidae) and Mycetophilidae. Br. J. Entomol. Nat. Hist. 2009;22:81.
Hickman V.V. On Planarivora insignis gen. et sp. n. (Diptera: Mycetophilidae), whose larval stages in land planarians are parasitic. Pap. Proc. R. Soc. Tasman. 1965;99:1–8.
Bertone M. Field Observations of Lygistorrhina sanctaecatharinae Thompson (Diptera: Sciaroidea) Proc. Entomol. Soc. Wash. 2018;120:448–451. doi: 10.4289/0013-8797.120.2.448. DOI
Edwards F. British Fungus-Gnats (Diptera, Mycetophilidae). With A Revised Generic Classification of the Family. Trans. R. Entomol. Soc. Lond. 1925;73:505–670. doi: 10.1111/j.1365-2311.1925.tb03369.x. DOI
Tuomikoski R. Systematic position of Lygistorrhina Skuse (Diptera, Mycetophiloidea) Ann. Entomol. Fenn. 1966;32:254–260.
Hennig W. Ordnung Diptera (Zweiflügler) Handb. Der Zool. 1973;4:1–337.
Søli G.E.E., Vokeroth J.R., Matile L. Families of Sciaroidea. In: Papp L., Darvas B., editors. Contributions to A Manual of Palaeartic Diptera. Science Herald; Budapest, Hungary: 2000. pp. 49–92.
Amorim D.D.S., Rindal E. Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha) Zootaxa. 2007;1535:1–92. doi: 10.11646/zootaxa.1535.1.1. DOI
Hippa H., Vilkamaa P. Phylogeny of the Sciaroidea (Diptera): The Implication of additional taxa and character data. Zootaxa. 2006;1132:63–68. doi: 10.11646/zootaxa.1132.1.4. DOI
Wiegmann B.M., Trautwein M.D., Winkler I.S., Barr N.B., Kim J.-W., Lambkin C., Bertone M.A., Cassel B.K., Bayless K.M., Heimberg A.M., et al. Episodic radiations in the fly tree of life. Proc. Natl. Acad. Sci. USA. 2011;108:5690–5695. doi: 10.1073/pnas.1012675108. PubMed DOI PMC
Vilkamaa P., Hippa H. The genus Sciarotricha gen. n. (Sciaridae) and the phylogeny of recent and fossil Sciaroidea (Diptera) Insect Syst. Evol. 2005;36:121–143. doi: 10.1163/187631205788838492. DOI
Bertone M., Courtney G., Wiegmann B. Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes. Syst. Entomol. 2008;33:668–687. doi: 10.1111/j.1365-3113.2008.00437.x. DOI
Rindal E., Søli G.E., Bachmann L. Molecular phylogeny of the fungus gnat family Mycetophilidae (Diptera, Mycetophiliformia) Syst. Entomol. 2009;34:524–532. doi: 10.1111/j.1365-3113.2009.00474.x. DOI
Kallweit U. Lygistorrhina Skuse has branched from the Keroplatidae (Diptera: Sciaroidea)—A new perspective on the phylogenetic relationships in the keroplatid group of fungus gnats; Proceedings of the 8th International Congress of Dipterology; Potsdam, Germany. 10–15 August 2014; p. 156.
Thompson F.C. Notes on the genus Lygistorrhina Skuse with the description of the first Nearctic species (Diptera: Mycetophiloidea) Proc. Entomol. Soc. Wash. 1975;77:434–445.
Kaspřák D., Kerr P., Sýkora V., Tóthová A., Ševčík J. Molecular phylogeny of the fungus gnat subfamilies Gnoristinae and Mycomyinae, and their position within Mycetophilidae (Diptera) Syst. Entomol. 2019;44:128–138. doi: 10.1111/syen.12312. DOI
Sikora T., Jaschhof M., Mantič M., Kaspřák D., Ševčík J. Considerable congruence, enlightening conflict: Molecular analysis largely supports morphology-based hypotheses on Cecidomyiidae (Diptera) phylogeny. Zool. J. Linn. Soc. 2019;185:98–110. doi: 10.1093/zoolinnean/zly029. DOI
Katoh K., Standley D.M. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Mol. Biol. Evol. 2013;30:772–780. doi: 10.1093/molbev/mst010. PubMed DOI PMC
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000;17:540–552. doi: 10.1093/oxfordjournals.molbev.a026334. PubMed DOI
Xia X., Lemey P. Assessing substitution saturation with DAMBE. Phylogenet. Handb. Pract. Approach DNA Protein Phylogeny. 2009;2:615–630.
Xia X. DAMBE5: A comprehensive software package for data analysis in molecular biology and evolution. Mol. Biol. Evol. 2013;30:1720–1728. doi: 10.1093/molbev/mst064. PubMed DOI PMC
Lanfear R., Frandsen P.B., Wright A.M., Senfeld T., Calcott B. PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol. Biol. Evol. 2016;34:772–773. doi: 10.1093/molbev/msw260. PubMed DOI
Yang Z. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol. Evol. 1996;11:367–372. doi: 10.1016/0169-5347(96)10041-0. PubMed DOI
Minh B.Q., Schmidt H.A., Chernomor O., Schrempf D., Woodhams M.D., Von Haeseler A., Lanfear R. IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Mol. Biol. Evol. 2020;37:1530–1534. doi: 10.1093/molbev/msaa015. PubMed DOI PMC
Hoang D.T., Chernomor O., Haeseler A.V., Minh B.Q., Vinh L.S. UFBoot2: Improving the Ultrafast Bootstrap Approximation. Mol. Biol. Evol. 2017;35:518–522. doi: 10.1093/molbev/msx281. PubMed DOI PMC
Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19:1572–1574. doi: 10.1093/bioinformatics/btg180. PubMed DOI
Miller M.A., Pfeiffer W., Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees; Proceedings of the 2010 gateway computing environments workshop (GCE); New Orleans, LA, USA. 14 November 2010; DOI
Rambaut A., Drummond A.J., Xie D., Baele G., Suchard M.A. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst. Biol. 2018;67:901. doi: 10.1093/sysbio/syy032. PubMed DOI PMC
Letunic I., Bork P. Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011;39:475–478. doi: 10.1093/nar/gkr201. PubMed DOI PMC
Edwards F.W. A note on the “New Zealand glow-worm” (Diptera, Mycetophilidae) Ann. Mag. Nat. Hist. 1924;14:175–179. doi: 10.1080/00222932408633104. DOI
Sabrosky C.W. Family-group names in Diptera: An annotated catalog. Myia. 1999;10:1–360.
Soós Á., Papp L. Catalogue of Palaearctic Diptera: Ceratopogonidae-Mycetophilidae. Elsevier; Amsterdam, The Netherlands: 1988.
Kurina O. Fungus Gnats in Estonia: (Diptera: Bolitophilidae, Keroplatidae, Macroceridae, Ditomyiidae, Diadocidiidae, Mycetophilidae) Tartu University Press; Tartu, Estonia: 1998.
Polevoi A.V. Fungus Gnats (Diptera: Bolitophilidae, Ditomyiidae, Keroplatidae, Diadocidiidae, Mycetophilidae) of Karelia. Karelian Research Centre, Russian Academy of Sciences; Petrozavodsk, Russia: 2000.
Papp L. New record of Diptera species from Hungary, with the list of the Hungarian Scathophagidae. Folia Entomol. Hung. 2006;67:121–128.
Papp L. Dixidae, Axymyiidae, Mycetobiidae, Keroplatidae, Macroceridae, and Ditomyiidae(Diptera) from Taiwan. Acta Zool. Acad. Sci. Hung. 2007;53:273–294.
Ševčík J. Langkawiana maculata gen. et sp. n. from Malaysia and its systematic position in the tribe Robsonomyiini (Diptera: Keroplatidae) Zootaxa. 2009;2221:58–66. doi: 10.11646/zootaxa.2221.1.4. DOI
Amorim D.D.S., Niu C., Li X., Lei C., Clarke A. Chetoneura shennonggongensis, a new species of cave-dwelling Keroplatini from China (Diptera: Keroplatidae), with a discussion of the position of Chetoneura. Zootaxa. 2008;1716:59–68. doi: 10.11646/zootaxa.1716.1.6. DOI
Blagoderov V. Lygistorrhinidae (Long-beaked Fungus Gnats) In: Kirk–Spriggs A.H., Sinclair B.J., editors. Manual of Afrotropical Diptera. Nematocerous Diptera and lower Brachycera. 2nd ed. Volume 2. South African National Biodiversity Institute; Pretoria, South Africa: 2017. pp. 527–531.
Hippa H., Mattsson I., Vilkamaa P. New Taxa of the Lygistorrhinidae (Diptera: Sciaroidea) and Their Implications for a Phylogenetic Analysis of the Family. Zootaxa. 2005;960:1–34. doi: 10.11646/zootaxa.960.1.1. DOI
Blagoderov V., Hippa H., Ševčík J. Asiorrhina, a new Oriental genus of Lygistorrhinidae (Diptera: Sciaroidea) and its phylogenetic position. Zootaxa. 2009;2295:31–45. doi: 10.11646/zootaxa.2295.1.4. DOI
Matile L. Revision des Truplaya Afrotropicaux (Diptera, Mycetophilidae) Ann. De La Société Entomol. De Fr. 1978;14:451–477.
Blagoderov V., Ševčík J. Keroplatidae (Predaceous Fungus Gnats) In: Kirk–Spriggs A.H., Sinclair B.J., editors. Manual of Afrotropical Diptera. Nematocerous Diptera and lower Brachycera. 2nd ed. Volume 2. South African National Biodiversity Institute; Pretoria, South Africa: 2017. pp. 527–531.
Matile L. Rocetelion, a new Holarctic genus of the Keroplatidae (Diptera, Mycetophiloidea): Description, phylogenetic and biogeographic notes. Ann. Entomol. Fenn. 1988;54:107–113.
Uesugi K. Fungus gnats of the genus Urytalpa Edwards (Diptera: Keroplatidae) in Japan. Entomol. Sci. 2004;7:369–376. doi: 10.1111/j.1479-8298.2004.00085.x. DOI
Kjærandsen J., Martinsson S., Hedmark K., Evenhuis N.L. On the genus Urytalpa Edwards (Diptera: Keroplatidae) in the Nordic and Nearctic Regions, with fixation of a new type species and a key to World males. Zootaxa. 2009;2160:29–50. doi: 10.11646/zootaxa.2160.1.2. DOI
Fitzgerald S. A Curious new genus of Keroplatini (Diptera: Keroplatidae) from Guatemala. Zootaxa. 2019;4586:383. doi: 10.11646/zootaxa.4586.2.11. PubMed DOI
Chandler P.J., Blasco-Zumeta J. The fungus gnats (Diptera, Bolitophilidae, Keroplatidae and Mycetophilidae) of the Monegros region (Zaragoza, Spain) and five other new European species of Pyratula Edwards and Sciophila Meigen. Zapateri. Rev. Aragonesa De Entomol. 2001;9:1–24. doi: 10.11646/zootaxa.2318.1.19. DOI
Kovac D., Matile L. Truplaya ferox (Insecta: Diptera: Mycetophiloidea), a new Malaysian keroplatid from bamboo phytotelmata with larvae predaceous on ants. Raffles Bull. Zool. 1997;45:15–28.
Matile L. Diptera: Mycetophilidae Keroplatinae. S. Afr. Anim. Life. 1974;15:1–532.
Ševčík J. Terocelion gen. nov., a new Oriental genus of Keroplatidae (Diptera) with pectinate antennae. Acta Entomol. Musei Natl. Pragae. 2012;52:495–503.