Reflections on Menisporopsis, Multiguttulispora and Tainosphaeria Using Molecular and Morphological Data

. 2021 May 31 ; 7 (6) : . [epub] 20210531

Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid34072784

Grantová podpora
20-14840S Grantová Agentura České Republiky

The genera Menisporopsis, Multiguttulispora and Tainosphaeria (Chaetosphaeriaceae) are saprobes inhabiting decaying plant material. This study is based on an integrated morpho-molecular characterisation to assess their generic concepts and explore phylogenetic relationships. Menisporopsis is revealed as polyphyletic, and species with 1-septate conidia and synnemata growing unilaterally along the seta are placed in the new segregate genus Arcuatospora. Codinaea dimorpha and C. triseptata are shown to be congeneric with Multiguttulispora sympodialis, the type species. Two new combinations are proposed: M. sympodialis is found conspecific with M. dimorpha. The Tainosphaeria complex is resolved into three genera. We found that the morphological separation of three groups within the genus is consistent with phylogenetic relationships. Tainosphaeria s. str. is accepted with five species. Tainosphaeria aseptata and T. lunata are transferred to the newly erected Phialoturbella, whereas T. obclavata is revealed as conspecific with Phialogeniculata guadalcanalensis, reducing it to a synonym. A new genus Flectospora is erected for a chloridium-like fungus nested in the Tainosphaeria clade. Based on molecular evidence, we show that asymmetrical, scolecosporous ascospores are a unique teleomorphic characteristic among family members. Therefore, we propose new combinations for Chaetosphaeria hispida in Paragaeumannomyces and Ch. spinosa in the new genus Ericiosphaeria, both exhibiting this rare morphotype.

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Hughes S.J. Fungi from the Gold Coast. I. Mycol. Pap. 1952;48:1–91.

Lin C.G., McKenzie E.H.C., Liu J.K., Jones E.B.G., Hyde K.D. Hyaline-spored chaetosphaeriaceous hyphomycetes from Thailand and China, with a review of the family Chaetosphaeriaceae. Mycosphere. 2019;10:655–700. doi: 10.5943/mycosphere/10/1/14. DOI

Fernández F.A., Huhndorf S.M. New species of Chaetosphaeria, Melanopsammella and Tainosphaeria gen. nov. from the Americas. Fungal Divers. 2005;18:15–57.

Varghese K.I.M., Rao V.G. Two new setose hyphomycetes from India. Bot. Not. 1978;131:215–217.

Tsui K.M., Goh T.K., Hyde K.D., Hodgkiss I.J. Reflections on Menisporopsis, with the addition of M. multisetulata sp. nov. from submerged wood in Hong Kong. Mycol. Res. 1999;103:148–152. doi: 10.1017/S0953756298006923. DOI

Castañeda-Ruíz R.F., Iturriaga T., Saikawa M., Cano J., Guarro J. The genus Menisporopsis in Venezuela with the addition of M. anisospora anam. sp. nov. from a palm tree. Cryptogam. Mycol. 2001;22:259–263. doi: 10.1016/S0181-1584(01)01072-7. DOI

Matsushima T. Matsushima mycological memoirs. Matsushima Mycol. Mem. 2003;10:1–214.

MycoBank Database. [(accessed on 11 February 2021)]; Available online: www.mycobank.org.

Hughes S.J., Kendrick W.B. New Zealand fungi 12. Menispora, Codinaea, Menisporopsis. N. Z. J. Bot. 1968;6:323–375. doi: 10.1080/0028825X.1968.10428818. DOI

Crane J.L., Schoknecht J.D. Hyphomycetes from freshwater swamps and hammocks. Can. J. Bot. 1982;60:369–378. doi: 10.1139/b82-051. DOI

Kirk P., Sutton B. A reassessment of the anamorph genus Chaetopsina (Hyphomycetes) Trans. Br. Mycol. Soc. 1985;85:709–717. doi: 10.1016/S0007-1536(85)80267-9. DOI

Bender H.B. The genera of Fungi Imperfecti. Mycologia. 1932;24:410–412. doi: 10.1080/00275514.1932.12020630. DOI

Castañeda-Ruíz R.F., Cano J., Guarro J. Notes on conidial fungi VI. Menisporopsis. Mycotaxon. 1997;64:335–342.

Maire R. Fungi Catalaunici: Series altera. Contributions a l’étude de la flore mycologique de la Catalogne. Publ. L’inst. Bot. Barc. 1937;3:1–128.

Luo Z.L., Hyde K.D., Liu J.-K., Maharachchikumbura S.S.N., Rajesh J., Bao D.-F., Bhat D.J., Lin C.-G., Li W.-L., Yang J., et al. Freshwater Sordariomycetes. Fungal Divers. 2019;99:451–660. doi: 10.1007/s13225-019-00438-1. DOI

Kobayasi Y. Mycological reports from New Guinea and the Solomon Islands (1–11) Bull. Natl. Sci. Mus. Tokyo. 1971;14:367–551.

Matsushima T. Microfungi of the Solomon Islands and Papua New Guinea. Matsushima; Kobe, Japan: 1971.

Ma Y.-R., Xia J.-W., Gao J.-M., Li Z., Zhang X.-G. Anacacumisporium, a new genus based on morphology and molecular analyses from Hainan, China. Cryptogam. Mycol. 2016;37:45–59. doi: 10.7872/crym/v37.iss1.2016.45. DOI

Réblová M., Seifert K.A. Six new species of Chaetosphaeria from tropical rain forests in Thailand and redescription of Chaetosphaeria hiugensis. Sydowia. 2003;55:313–347.

Réblová M., Nekvindová J., Fournier J., Miller A.N. Delimitation, new species and teleomorph-anamorph relationships in Codinaea, Dendrophoma, Paragaeumannomyces and Striatosphaeria (Chaetosphaeriaceae) MycoKeys. 2020;74:17–74. doi: 10.3897/mycokeys.74.57824. PubMed DOI PMC

Toyazaki N., Udagawa S. An undescribed pleomorphic species of Codinaea. Mycotaxon. 1981;13:450–456.

Matsushima T. Matsushima mycological memoirs. Matsushima Mycol. Mem. 1981;2:1–68.

Malloch D. Moulds: Their Isolation, Cultivation and Identification. University of Toronto Press; Toronto, ON, Canada: 1981.

Crous P.W., Verkley G.J.M., Groenewald J.Z., Houbraken J. Fungal Biodiversity. CBS-KNAW Fungal Biodiversity Centre; Utrecht, The Netherlands: 2019. (CBS Laboratory Manual Series 1).

De Hoog G.S., Weenink X.O., Gerrits van den Ende A.H.G. Taxonomy of the Phialophora verrucosa complex with the description of two new species. Stud. Mycol. 1999;43:107–121.

Vilgalys Mycology Lab—Duke University Conserved Primer Sequences for PCR Amplification of Fungal rDNA. [(accessed on 22 January 2021)]; Available online: https://sites.duke.edu/vilgalyslab/rdna_primers_for_fungi.

Vilgalys R., Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J. Bacteriol. 1990;172:4238–4246. doi: 10.1128/JB.172.8.4238-4246.1990. PubMed DOI PMC

White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J., editors. PCR Protocols: A Guide to Methods and Applications. Academic Press; San Diego, CA, USA: 1990. pp. 315–322.

Landvik S. Neolecta, a fruit-body-producing genus of the basal ascomycetes, as shown by SSU and LSU DNA sequences. Mycol. Res. 1996;100:199–202. doi: 10.1016/S0953-7562(96)80122-5. DOI

NBRC Online Catalogue. Biological Resource Center, NITE; Tokyo, Japan: [(accessed on 1 March 2021)]. Available online: www.nite.go.jp/nbrc/catalogue.

Sayers E.W., Cavanaugh M., Clark K., Ostell J., Pruitt K.D., Karsch-Mizrachi I. GenBank. Nucleic Acids Res. 2019;47:D94–D99. doi: 10.1093/nar/gky989. PubMed DOI PMC

Réblová M., Nekvindová J., Kolařík M., Hernández-Restrepo M. Delimitation and phylogeny of Dictyochaeta, and introduction of Achrochaeta and Tubulicolla genera nova. Mycologia. 2021;113:390–433. doi: 10.1080/00275514.2020.1822095. PubMed DOI

Atkinson T.J., Miller A.N., Huhndorf S.M., Orlovich D.A. Unusual new Chaetosphaeria species from New Zealand: Intrafamilial diversity and elucidations of the Chaetosphaeriaceae—Lasiosphaeriaceae relationship (Sordariomycetes, Ascomycotina) N. Z. J. Bot. 2007;45:685–706. doi: 10.1080/00288250709509744. DOI

Crous P.W., Verkley G.J.M., Christensen M., Castañeda-Ruíz R.F., Groenewald J.Z. How important are conidial appendages? Persoonia. 2012;28:126–137. doi: 10.3767/003158512X652624. PubMed DOI PMC

Fernández F.A., Miller A.N., Huhndorf S.M., Lutzoni F.M., Zoller S. Systematics of the genus Chaetosphaeria and its allied genera: Morphological and phylogenetic diversity in north temperate and neotropical taxa. Mycologia. 2006;98:121–130. doi: 10.1080/15572536.2006.11832718. PubMed DOI

Hashimoto A., Sato G., Matsuda T., Matsumura M., Hatakeyama S., Harada Y., Ikeda H., Tanaka K. Taxonomic revision of Pseudolachnea and Pseudolachnella, and establishment of Neopseudolachnella and Pseudodinemasporium genera nova. Mycologia. 2015;107:383–408. doi: 10.3852/14-171. PubMed DOI

Hernández-Restrepo M., Schumacher R.K., Wingfield M.J., Ahmad I., Cai L., Duong T.A., Edwards J., Gené J., Groenewald J.Z., Jabeen S., et al. Fungal Systematics and Evolution: FUSE 2. Sydowia. 2016;68:193–230.

Hernández-Restrepo M., Gené J., Castañeda-Ruíz R.F., Mena-Portales J., Crous P.W., Guarro J. Phylogeny of saprobic microfungi from Southern Europe. Stud. Mycol. 2017;86:53–97. doi: 10.1016/j.simyco.2017.05.002. PubMed DOI PMC

Liu J.K., Yang J., Maharachchikumbura S.S.N., McKenzie E.H.C., Jones E.B.G., Hyde K.D., Liu Z.Y. Novel chaetosphaeriaceous hyphomycetes from aquatic habitats. Mycol. Prog. 2016;15:1157–1167. doi: 10.1007/s11557-016-1237-1. DOI

Lu Y.Z., Liu K.J., Hyde K.D., Bhat D.J., Xiao Y.P., Tian Q., Wen T.C., Boonmee S., Kang J.C. Brunneodinemasporium jonesii and Tainosphaeria jonesii spp. nov. (Chaetosphaeriaceae, Chaetosphaeriales) from southern China. Mycosphere. 2016;7:1322–1331. doi: 10.5943/mycosphere/7/9/6. DOI

Magyar D., Shoemaker R.A., Bobvos J., Crous P.W., Groenewald J.Z. Pyrigemmula, a novel hyphomycete genus on grapevine and tree bark from Hungary. Mycol. Prog. 2011;10:307–314. doi: 10.1007/s11557-010-0703-4. DOI

Perera R.H., Maharachchikumbura S.S.N., Bhat J.D., Al-Sadi A.M., Liu J.K., Hyde K.D., Liu Z.Y. New species of Thozetella and Chaetosphaeria and new records of Chaetosphaeria and Tainosphaeria from Thailand. Mycosphere. 2016;7:1301–1321. doi: 10.5943/mycosphere/7/9/5. DOI

Prabhugaonkar A., Bhat D.J. Rattania setulifera, an undescribed endophytic hyphomycete on rattans from Western Ghats, India. Mycotaxon. 2009;108:217–222. doi: 10.5248/108.217. DOI

Réblová M., Winka K. Phylogeny of Chaetosphaeria and its anamorphs based on morphological and molecular data. Mycologia. 2000;92:939–954. doi: 10.1080/00275514.2000.12061238. DOI

Réblová M., Winka K. Generic concepts and correlations in ascomycetes based on molecular and morphological data: Lecythothecium duriligni gen. et sp. nov. with a Sporidesmium anamorph, and Ascolacicola austriaca sp. nov. Mycologia. 2001;93:478–493. doi: 10.1080/00275514.2001.12063181. DOI

Réblová M., Kolařík M., Nekvindová J., Miller A.N., Hernández-Restrepo M. Phylogeny, global biogeography and pleomorphism of Zanclospora. Microorganisms. 2021;9:706. doi: 10.3390/microorganisms9040706. PubMed DOI PMC

Somrithipol S., Sakayaroj J., Rungjindamai N., Plaingam N., Jones E.B.G. Phylogenetic relationship of the coelomycete genus Infundibulomyces based on nuclear rDNA data. Mycologia. 2008;100:735–741. doi: 10.3852/07-040. PubMed DOI

Vu D., Groenewald M., de Vries M., Gehrmann T., Stielow B., Eberhardt U., Al-Hatmi A., Groenewald J.Z., Cardinali G., Houbraken J., et al. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Stud. Mycol. 2019;92:135–154. doi: 10.1016/j.simyco.2018.05.001. PubMed DOI PMC

Yang J., Liu N.G., Liu J.K., Hyde K.D., Jones E.B.G., Liu Z.Y. Phylogenetic placement of Cryptophiale, Cryptophialoidea, Nawawia, Neonawawia gen. nov. and Phialosporostilbe. Mycosphere. 2018;9:1132–1150. doi: 10.5943/mycosphere/9/6/5. DOI

Sukosd Z., Knudsen B., Kjems J., Pedersen C.N.S. PPfold 3.0: Fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics. 2012;28:2691–2692. doi: 10.1093/bioinformatics/bts488. PubMed DOI

Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;31:3406–3415. doi: 10.1093/nar/gkg595. PubMed DOI PMC

RNAfold Web Server. [(accessed on 10 March 2021)]; Available online: www.nite.go.jp/nbrc/catalogue.

Gruber A.R., Bernhart S.H., Lorenz R. The ViennaRNA web services. Methods Mol. Biol. 2015;1269:307–326. PubMed

Darty K., Denise A., Ponty Y. VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics. 2009;25:1974–1975. doi: 10.1093/bioinformatics/btp250. PubMed DOI PMC

Hall T.A. BioEdit 5.0.9: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999;41:95–98.

Gutell R.R., Gray M.W., Schnare M.N. A compilation of large subunit (23S and 23 S-like) ribosomal RNA structures. Nucleic Acids Res. 1993;21:3055–3074. doi: 10.1093/nar/21.13.3055. PubMed DOI PMC

Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000;17:540–552. doi: 10.1093/oxfordjournals.molbev.a026334. PubMed DOI

Lanfear R., Frandsen P.B., Wright A.M., Senfeld T., Calcott B. PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol. Biol. Evol. 2017;34:772–773. doi: 10.1093/molbev/msw260. PubMed DOI

Miller M.A., Pfeiffer W., Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees; Proceedings of the Gateway Computing Environments Workshop (GCE); New Orleans, LA, USA. 14 November 2010; pp. 1–8.

CIPRES Science Gateway. [(accessed on 9 April 2020)]; Available online: www.phylo.org.

Stamatakis A. RAxML Version 8: A tool for Phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312–1313. doi: 10.1093/bioinformatics/btu033. PubMed DOI PMC

Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 2001;17:754–755. doi: 10.1093/bioinformatics/17.8.754. PubMed DOI

Matsushima T. Saprophytic microfungi from Taiwan Part 1: Hyphomycetes. Matsushima Mycol. Mem. 1980;1:1–82.

Matsushima T. Matsushima mycological memoirs. Matsushima Mycol. Mem. 1989;6:1–100.

Matsushima T. Matsushima mycological memoirs. Matsushima Mycol. Mem. 1993;7:1–141.

Mercado-Sierra A., Gené J., Guarro J. Some Costa Rican hyphomycetes. I. Nova Hedwig. 1997;64:455–465. doi: 10.1127/nova.hedwigia/64/1997/455. DOI

Delgado-Rodríguez G., Mena-Portales J., Calduch M., Decock C. Hyphomycetes (Hongos Mitospóricos) del Área Protegida Mil Cumbres, Cuba Occidental. Cryptogam. Mycol. 2002;23:277–293.

Arias R.M., Heredia G., Mena-Portales J. Adiciones al conocimiento de la diversidad de los hongos anamorfos del bosque mesófilo de montaña del Estado de Veracruz III. Acta Bot. Mex. 2010;90:19–42. doi: 10.21829/abm90.2010.297. DOI

Almeida D.A.C., Izabel T.D., Gusmão L.F.P. Conidial fungi from Caatinga biome I. New records for Americas, Neotropics, South America and Brazil. Rodriguésia. 2011;62:43–53. doi: 10.1590/2175-7860201162104. DOI

Cruz A.C.R., Marques M.F.O., Gusmão L.F.P. Conidial fungi from the semi-arid Caatinga biome of Brazil. The genus Menisporopsis. Acta Bot. Bras. 2014;28:339–345. doi: 10.1590/0102-33062014abb3207. DOI

Matsushima T. Icones Microfungorum a Matsushima Lectorum. Matsushima; Kobe, Japan: 1975.

Huhndorf S.M., Fernández F.A. Teleomorph-anamorph connections: Chaetosphaeria raciborskii and related species, and their Craspedodidymum-like anamorphs. Fungal Divers. 2005;19:23–49.

Holubová-Jechová V. Studies on hyphomycetes from Cuba I. Česká Mykol. 1983;37:12–18.

Castañeda-Ruíz R.F. Fungi Cubenses I. Instituto de Investigaciones Funfamentales en Agricultura Tropical ‘Alejandro de Humboldt’; Habana, Cuba: 1986.

Cannon P.F., Simmons C.M. Diversity and host preference of leaf endophytic fungi in the Iwokrama Forest Reserve, Guyana. Mycologia. 2002;94:210–220. doi: 10.1080/15572536.2003.11833226. PubMed DOI

Crous P.W., Schumacher R.K., Wingfield M.J., Lombard L., Giraldo A., Christensen M., Gardiennet A., Nakashima C., Pereira O., Smith A.J., et al. Fungal systematics and evolution: FUSE 1. Sydowia. 2015;67:81–118.

Cruz A.C.R., Gusmão L.F.P. Fungos conidiais na Caatinga: Espécies associadas ao folhedo. Acta Bot. Bras. 2009;23:999–1012. doi: 10.1590/S0102-33062009000400010. DOI

Catania M.D.V. Micromycetes on bark and wood of Podocarpus parlatorei (Podocarpaceae) from Argentina. X. Chaetosphaeria (Chaetosphaeriaceae, Ascomycota) Bonplandia. 2021;30:107–117. doi: 10.30972/bon.3014670. DOI

Réblová M., Gams W. Teleomorph-anamorph connections in ascomycetes 1. Cylindrotrichum and Cacumisporium anamorphs of Chaetosphaeria. Czech Mycol. 1999;51:1–40. doi: 10.33585/cmy.51101. DOI

Kuthubutheen A.J., Nawawi A. Dictyochaeta guadalcanalensis comb. nov. and several new records of the genus in Malaysia. Mycol. Res. 1991;95:1220–1223. doi: 10.1016/S0953-7562(09)80014-2. DOI

Hyde K.D., Goh T.K., Steinke T.D. Fungi on submerged wood in the Palmiet River, Durban, South Africa. S. Afr. J. Bot. 1998;64:151–162. doi: 10.1016/S0254-6299(15)30860-7. DOI

Morgan-Jones G. Notes on Hyphomycetes. XL. New species of Codinaea and Veronaea. Mycotaxon. 1982;14:175–180.

Hewings A.D., Crane J.L. The genus Codinaea. Three new species from the Americas. Mycotaxon. 1981;13:419–427.

Castañeda-Ruíz R.F., Kendrick B. Conidial fungi from Cuba: I. Univ. Waterloo Biol. Ser. 1990;32:1–53.

Maggi O., Persiani A.M. Codinaea coffeae and Phialocephala xalapensis, two new hyphomycetes from Mexico. Mycotaxon. 1984;20:251–258.

Spegazzini C. Algunos hongos de Tierra del Fuego. Physis. 1923;7:9–23.

Hughes S.J. Revisiones Hyphomycetum aliquot cum appendice de nominibus rejiciendis. Can. J. Bot. 1958;36:727–836. doi: 10.1139/b58-067. DOI

Gams W., Holubová-Jechová V. Chloridium and some other dematiaceous hyphomycetes growing on decaying wood. Stud. Mycol. 1976;13:1–99.

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