Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum

. 2021 Jun 01 ; 77 (Pt 6) : 755-775. [epub] 20210514

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid34076590

Grantová podpora
RVO: 86652036 Akademie Věd České Republiky, Institute of Biotechnology of the Czech Academy of Sciences
RVO: 68378050-KAV-NPU Akademie Věd České Republiky, Institute of Molecular Genetics of the Czech Academy of Sciences
CZ.02.1.01/0.0/0.0/15_003/0000447 European Regional Development Fund
CZ.02.1.01/0.0/0.0/16_013/0001776 European Regional Development Fund
CZ.1.05/1.1.00/02.0109 European Regional Development Fund
LM201504 Ministry of Education, Youth and Sports of the Czech Republic
LM2018127 Ministry of Education, Youth and Sports of the Czech Republic
LM201506 Ministry of Education, Youth and Sports of the Czech Republic
LM2018130 Ministry of Education, Youth and Sports of the Czech Republic
CZ.02.1.01/0.0/0.0/16_019/0000778 Ministry of Education, Youth and Sports of the Czech Republic
SGS19/189/OHK4/3T/14 Grantová Agentura České Republiky

The FAD-dependent oxidoreductase from Chaetomium thermophilum (CtFDO) is a novel thermostable glycoprotein from the glucose-methanol-choline (GMC) oxidoreductase superfamily. However, CtFDO shows no activity toward the typical substrates of the family and high-throughput screening with around 1000 compounds did not yield any strongly reacting substrate. Therefore, protein crystallography, including crystallographic fragment screening, with 42 fragments and 37 other compounds was used to describe the ligand-binding sites of CtFDO and to characterize the nature of its substrate. The structure of CtFDO reveals an unusually wide-open solvent-accessible active-site pocket with a unique His-Ser amino-acid pair putatively involved in enzyme catalysis. A series of six crystal structures of CtFDO complexes revealed five different subsites for the binding of aryl moieties inside the active-site pocket and conformational flexibility of the interacting amino acids when adapting to a particular ligand. The protein is capable of binding complex polyaromatic substrates of molecular weight greater than 500 Da.

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