Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
RVO: 86652036
Akademie Věd České Republiky, Institute of Biotechnology of the Czech Academy of Sciences
RVO: 68378050-KAV-NPU
Akademie Věd České Republiky, Institute of Molecular Genetics of the Czech Academy of Sciences
CZ.02.1.01/0.0/0.0/15_003/0000447
European Regional Development Fund
CZ.02.1.01/0.0/0.0/16_013/0001776
European Regional Development Fund
CZ.1.05/1.1.00/02.0109
European Regional Development Fund
LM201504
Ministry of Education, Youth and Sports of the Czech Republic
LM2018127
Ministry of Education, Youth and Sports of the Czech Republic
LM201506
Ministry of Education, Youth and Sports of the Czech Republic
LM2018130
Ministry of Education, Youth and Sports of the Czech Republic
CZ.02.1.01/0.0/0.0/16_019/0000778
Ministry of Education, Youth and Sports of the Czech Republic
SGS19/189/OHK4/3T/14
Grantová Agentura České Republiky
PubMed
34076590
PubMed Central
PMC8171062
DOI
10.1107/s2059798321003533
PII: S2059798321003533
Knihovny.cz E-zdroje
- Klíčová slova
- Chaetomium thermophilum, FAD-dependent oxidoreductases, GMC oxidoreductases, crystallographic fragment screening,
- MeSH
- Chaetomium enzymologie MeSH
- flavinadenindinukleotid chemie MeSH
- fungální proteiny chemie MeSH
- konformace proteinů MeSH
- molekulární modely * MeSH
- oxidoreduktasy chemie MeSH
- vazebná místa MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- flavinadenindinukleotid MeSH
- fungální proteiny MeSH
- oxidoreduktasy MeSH
The FAD-dependent oxidoreductase from Chaetomium thermophilum (CtFDO) is a novel thermostable glycoprotein from the glucose-methanol-choline (GMC) oxidoreductase superfamily. However, CtFDO shows no activity toward the typical substrates of the family and high-throughput screening with around 1000 compounds did not yield any strongly reacting substrate. Therefore, protein crystallography, including crystallographic fragment screening, with 42 fragments and 37 other compounds was used to describe the ligand-binding sites of CtFDO and to characterize the nature of its substrate. The structure of CtFDO reveals an unusually wide-open solvent-accessible active-site pocket with a unique His-Ser amino-acid pair putatively involved in enzyme catalysis. A series of six crystal structures of CtFDO complexes revealed five different subsites for the binding of aryl moieties inside the active-site pocket and conformational flexibility of the interacting amino acids when adapting to a particular ligand. The protein is capable of binding complex polyaromatic substrates of molecular weight greater than 500 Da.
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