Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia

. 2023 Jul 01 ; 79 (Pt 7) : 180-192. [epub] 20230705

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid37405486

Grantová podpora
CZ.02.1.01/0.0/0.0/16_019/0000778 European Regional Development Fund
CZ.02.1.01/0.0/0.0/15_003/0000447 European Regional Development Fund
CZ.1.05/1.1.00/02.0109 European Regional Development Fund
86652036 Akademie Věd České Republiky
SGS22/114/OHK4/2T/14 České Vysoké Učení Technické v Praze
LM2015043 Ministry of Education, Youth and Sports CR
LM2018127 Ministry of Education, Youth and Sports CR
CZ.02.1.01/0.0/0.0/18_046/0015974 Ministry of Education, Youth and Sports CR

The resistance of the emerging human pathogen Stenotrophomonas maltophilia to tetracycline antibiotics mainly depends on multidrug efflux pumps and ribosomal protection enzymes. However, the genomes of several strains of this Gram-negative bacterium code for a FAD-dependent monooxygenase (SmTetX) homologous to tetracycline destructases. This protein was recombinantly produced and its structure and function were investigated. Activity assays using SmTetX showed its ability to modify oxytetracycline with a catalytic rate comparable to those of other destructases. SmTetX shares its fold with the tetracycline destructase TetX from Bacteroides thetaiotaomicron; however, its active site possesses an aromatic region that is unique in this enzyme family. A docking study confirmed tetracycline and its analogues to be the preferred binders amongst various classes of antibiotics.

Zobrazit více v PubMed

Afonine, P. V., Moriarty, N. W., Mustyakimov, M., Sobolev, O. V., Terwilliger, T. C., Turk, D., Urzhumtsev, A. & Adams, P. D. (2015). Acta Cryst. D71, 646–666. PubMed PMC

Agirre, J., Atanasova, M., Bagdonas, H., Ballard, C. B., Baslé, A., Beilsten-Edmands, J., Borges, R. J., Brown, D. G., Burgos-Mármol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. É., Devenish, N. E., Dodson, E. J., Drevon, T. R., Emsley, P., Evans, G., Evans, P. R., Fando, M., Foadi, J., Fuentes-Montero, L., Garman, E. F., Gerstel, M., Gildea, R. J., Hatti, K., Hekkelman, M. L., Heuser, P., Hoh, S. W., Hough, M. A., Jenkins, H. T., Jiménez, E., Joosten, R. P., Keegan, R. M., Keep, N., Krissinel, E. B., Kolenko, P., Kovalevskiy, O., Lamzin, V. S., Lawson, D. M., Lebedev, A. A., Leslie, A. G. W., Lohkamp, B., Long, F., Malý, M., McCoy, A. J., McNicholas, S. J., Medina, A., Millán, C., Murray, J. W., Murshudov, G. N., Nicholls, R. A., Noble, M. E. M., Oeffner, R., Pannu, N. S., Parkhurst, J. M., Pearce, N., Pereira, J., Perrakis, A., Powell, H. R., Read, R. J., Rigden, D. J., Rochira, W., Sammito, M., Sánchez Rodríguez, F., Sheldrick, G. M., Shelley, K. L., Simkovic, F., Simpkin, A. J., Skubak, P., Sobolev, E., Steiner, R. A., Stevenson, K., Tews, I., Thomas, J. M. H., Thorn, A., Valls, J. T., Uski, V., Usón, I., Vagin, A., Velankar, S., Vollmar, M., Walden, H., Waterman, D., Wilson, K. S., Winn, M. D., Winter, G., Wojdyr, M. & Yamashita, K. (2023). Acta Cryst. D79, 449–461.

Aleksandrov, A., Proft, J., Hinrichs, W. & Simonson, T. (2007). ChemBioChem, 8, 675–685. PubMed

Arita, M., Karsch-Mizrachi, I. & Cochrane, G. (2021). Nucleic Acids Res. 49, D121–D124. PubMed PMC

Berman, H., Henrick, K. & Nakamura, H. (2003). Nat. Struct. Mol. Biol. 10, 980. PubMed

Boratyn, G. M., Camacho, C., Cooper, P. S., Coulouris, G., Fong, A., Ma, N., Madden, T. L., Matten, W. T., McGinnis, S. D., Merezhuk, Y., Raytselis, Y., Sayers, E. W., Tao, T., Ye, J. & Zaretskaya, I. (2013). Nucleic Acids Res. 41, W29–W33. PubMed PMC

Brodersen, D. E., Clemons, W. M., Carter, A. P., Morgan-Warren, R. J., Wimberly, B. T. & Ramakrishnan, V. (2000). Cell, 103, 1143–1154. PubMed

Brooke, J. S. (2012). Clin. Microbiol. Rev. 25, 2–41. PubMed PMC

Brooke, J. S. (2014). Expert Rev. Anti Infect. Ther. 12, 1–4. PubMed

Chang, Y.-T., Lin, C.-Y., Chen, Y.-H. & Hsueh, P.-R. (2015). Front. Microbiol. 6, 893. PubMed PMC

Cheng, Q., Cheung, Y., Liu, C., Chan, E. W. C., Wong, K. Y., Zhang, R. & Chen, S. (2022). Commun. Biol. 5, 522. PubMed PMC

Cheng, Q., Cheung, Y., Liu, C., Xiao, Q., Sun, B., Zhou, J., Chan, E. W. C., Zhang, R. & Chen, S. (2021). BMC Biol. 19, 262. PubMed PMC

Chopra, I. & Roberts, M. (2001). Microbiol. Mol. Biol. Rev. 65, 232–260. PubMed PMC

Clinger, J. A., Wang, X., Cai, W., Zhu, Y., Miller, M. D., Zhan, C., Van Lanen, S. G., Thorson, J. S. & Phillips, G. N. (2021). Proteins, 89, 132–137. PubMed PMC

Crozier-Reabe, K. & Moran, G. (2012). Int. J. Mol. Sci. 13, 15601–15639. PubMed PMC

Dym, O. & Eisenberg, D. (2001). Protein Sci. 10, 1712–1728. PubMed PMC

Eberhardt, J., Santos-Martins, D., Tillack, A. F. & Forli, S. (2021). J. Chem. Inf. Model. 61, 3891–3898. PubMed PMC

Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486–501. PubMed PMC

Eppink, M. H. M., Bunthof, C., Schreuder, H. A. & van Berkel, W. J. H. (1999). FEBS Lett. 443, 251–255. PubMed

Eppink, M. H. M., Schreuder, H. A. & van Berkel, W. J. H. (1998). Eur. J. Biochem. 253, 194–201. PubMed

Esposito, A., Pompilio, A., Bettua, C., Crocetta, V., Giacobazzi, E., Fiscarelli, E., Jousson, O. & Di Bonaventura, G. (2017). Front. Microbiol. 8, 1590. PubMed PMC

Evans, P. R. & Murshudov, G. N. (2013). Acta Cryst. D69, 1204–1214. PubMed PMC

Fang, L., Chen, C., Cui, C., Li, X., Zhang, Y., Liao, X., Sun, J. & Liu, Y. (2020). BioEssays, 42, 2000014. PubMed

Fejfarová, K., Kádek, A., Mrázek, H., Hausner, J., Tretyachenko, V., Koval’, T., Man, P., Hašek, J. & Dohnálek, J. (2016). Acta Cryst. F72, 24–28. PubMed PMC

Forsberg, K. J., Patel, S., Wencewicz, T. A. & Dantas, G. (2015). Chem. Biol. 22, 888–897. PubMed PMC

Gajdács, M. & Urbán, E. (2019). Health Serv. Res. Manag. Epidemiol. 6, 233339281987077. PubMed PMC

Gasparrini, A. J., Markley, J. L., Kumar, H., Wang, B., Fang, L., Irum, S., Symister, C. T., Wallace, M., Burnham, C. D., Andleeb, S., Tolia, N. H., Wencewicz, T. A. & Dantas, G. (2020). Commun. Biol. 3, 241. PubMed PMC

Gil-Gil, T., Martínez, J. L. & Blanco, P. (2020). Expert Rev. Anti Infect. Ther. 18, 335–347. PubMed

Glady-Croue, J., Niu, X.-Z., Ramsay, J. P., Watkin, E., Murphy, R. J. T. & Croue, J.-P. (2018). Sci. Total Environ. 626, 1005–1011. PubMed

Gorrec, F. (2009). J. Appl. Cryst. 42, 1035–1042. PubMed PMC

Grossman, T. H. (2016). Cold Spring Harb. Perspect. Med. 6, a025387. PubMed PMC

He, T., Shen, J., Schwarz, S., Wu, C. & Wang, Y. (2015). J. Antimicrob. Chemother. 70, 1031–1036. PubMed

Heinig, M. & Frishman, D. (2004). Nucleic Acids Res. 32, W500–W502. PubMed PMC

Holm, L. (2020). Protein Sci. 29, 128–140. PubMed PMC

Huijbers, M. M. E., Montersino, S., Westphal, A. H., Tischler, D. & van Berkel, W. J. H. (2014). Arch. Biochem. Biophys. 544, 2–17. PubMed

Islam, M., Honma, M., Nakabayashi, T., Kinjo, M. & Ohta, N. (2013). Int. J. Mol. Sci. 14, 1952–1963. PubMed PMC

Jenner, L., Starosta, A. L., Terry, D. S., Mikolajka, A., Filonava, L., Yusupov, M., Blanchard, S. C., Wilson, D. N. & Yusupova, G. (2013). Proc. Natl Acad. Sci. USA, 110, 3812–3816. PubMed PMC

Kabsch, W. (2010). Acta Cryst. D66, 125–132. PubMed PMC

Karplus, P. A. & Diederichs, K. (2012). Science, 336, 1030–1033. PubMed PMC

Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., Zaslavsky, L., Zhang, J. & Bolton, E. E. (2021). Nucleic Acids Res. 49, D1388–D1395. PubMed PMC

Kleiger, G. & Eisenberg, D. (2002). J. Mol. Biol. 323, 69–76. PubMed

Koteva, K., Cox, G., Kelso, J. K., Surette, M. D., Zubyk, H. L., Ejim, L., Stogios, P., Savchenko, A., Sørensen, D. & Wright, G. D. (2018). Cell Chem. Biol. 25, 403–412. PubMed

Kovalevskiy, O., Nicholls, R. A., Long, F., Carlon, A. & Murshudov, G. N. (2018). Acta Cryst. D74, 215–227. PubMed PMC

Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256–2268. PubMed

Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774–797. PubMed

Krissinel, E., Uski, V., Lebedev, A., Winn, M. & Ballard, C. (2018). Acta Cryst. D74, 143–151. PubMed PMC

Kumar, H., Williford, E. E., Blake, K. S., Virgin-Downey, B., Dantas, G., Wencewicz, T. A. & Tolia, N. H. (2023). Commun. Biol. 6, 423. PubMed PMC

Laskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S. & Thornton, J. M. (2018). Protein Sci. 27, 129–134. PubMed PMC

Laskowski, R. A. & Swindells, M. B. (2011). J. Chem. Inf. Model. 51, 2778–2786. PubMed

Laskowski, R. A., Watson, J. D. & Thornton, J. M. (2005). Nucleic Acids Res. 33, W89–W93. PubMed PMC

Lewis, K. (2020). Cell, 181, 29–45. PubMed

Liebschner, D., Afonine, P. V., Baker, M. L., Bunkóczi, G., Chen, V. B., Croll, T. I., Hintze, B., Hung, L.-W., Jain, S., McCoy, A. J., Moriarty, N. W., Oeffner, R. D., Poon, B. K., Prisant, M. G., Read, R. J., Richardson, J. S., Richardson, D. C., Sammito, M. D., Sobolev, O. V., Stockwell, D. H., Terwilliger, T. C., Urzhumtsev, A. G., Videau, L. L., Williams, C. J. & Adams, P. D. (2019). Acta Cryst. D75, 861–877. PubMed

Liebschner, D., Afonine, P. V., Moriarty, N. W., Poon, B. K., Sobolev, O. V., Terwilliger, T. C. & Adams, P. D. (2017). Acta Cryst. D73, 148–157. PubMed PMC

Lira, F., Berg, G. & Martínez, J. L. (2017). Front. Microbiol. 8, 2190. PubMed PMC

Long, F., Nicholls, R. A., Emsley, P., Gražulis, S., Merkys, A., Vaitkus, A. & Murshudov, G. N. (2017). Acta Cryst. D73, 112–122. PubMed PMC

Madej, T., Lanczycki, C. J., Zhang, D., Thiessen, P. A., Geer, R. C., Marchler-Bauer, A. & Bryant, S. H. (2014). Nucleic Acids Res. 42, D297–D303. PubMed PMC

Malý, M., Diederichs, K., Dohnálek, J. & Kolenko, P. (2020). IUCrJ, 7, 681–692. PubMed PMC

Malý, M., Diederichs, K., Dohnálek, J. & Kolenko, P. (2021). Acta Cryst. F77, 226–229. PubMed PMC

Manalastas-Cantos, K., Konarev, P. V., Hajizadeh, N. R., Kikhney, A. G., Petoukhov, M. V., Molodenskiy, D. S., Panjkovich, A., Mertens, H. D. T., Gruzinov, A., Borges, C., Jeffries, C. M., Svergun, D. I. & Franke, D. (2021). J. Appl. Cryst. 54, 343–355. PubMed PMC

Markley, J. L. & Wencewicz, T. A. (2018). Front. Microbiol. 9, 1058. PubMed PMC

McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658–674. PubMed PMC

Mendez, D., Gaulton, A., Bento, A. P., Chambers, J., De Veij, M., Félix, E., Magariños, M. P., Mosquera, J. F., Mutowo, P., Nowotka, M., Gordillo-Marañón, M., Hunter, F., Junco, L., Mugumbate, G., Rodriguez-Lopez, M., Atkinson, F., Bosc, N., Radoux, C. J., Segura-Cabrera, A., Hersey, A. & Leach, A. R. (2019). Nucleic Acids Res. 47, D930–D940. PubMed PMC

Moore, I. F., Hughes, D. W. & Wright, G. D. (2005). Biochemistry, 44, 11829–11835. PubMed

Mueller, U., Förster, R., Hellmig, M., Huschmann, F. U., Kastner, A., Malecki, P., Pühringer, S., Röwer, M., Sparta, K., Steffien, M., Ühlein, M., Wilk, P. & Weiss, M. S. (2015). Eur. Phys. J. Plus, 130, 141.

Murray, C. J., Ikuta, K. S., Sharara, F., Swetschinski, L., Robles Aguilar, G., Gray, A., Han, C., Bisignano, C., Rao, P., Wool, E., Johnson, S. C., Browne, A. J., Chipeta, M. G., Fell, F., Hackett, S., Haines-Woodhouse, G., Kashef Hamadani, B. H., Kumaran, E. A. P., McManigal, B., Achalapong, S., Agarwal, R., Akech, S., Albertson, S., Amuasi, J., Andrews, J., Aravkin, A., Ashley, E., Babin, F., Bailey, F., Baker, S., Basnyat, B., Bekker, A., Bender, R., Berkley, J. A., Bethou, A., Bielicki, J., Boonkasidecha, S., Bukosia, J., Carvalheiro, C., Castañeda-Orjuela, C., Chansamouth, V., Chaurasia, S., Chiurchiù, S., Chowdhury, F., Clotaire Donatien, R., Cook, A. J., Cooper, B., Cressey, T. R., Criollo-Mora, E., Cunningham, M., Darboe, S., Day, N. P. J., De Luca, M., Dokova, K., Dramowski, A., Dunachie, S. J., Duong Bich, T., Eckmanns, T., Eibach, D., Emami, A., Feasey, N., Fisher-Pearson, N., Forrest, K., Garcia, C., Garrett, D., Gastmeier, P., Giref, A. Z., Greer, R. C., Gupta, V., Haller, S., Haselbeck, A., Hay, S. I., Holm, M., Hopkins, S., Hsia, Y., Iregbu, K. C., Jacobs, J., Jarovsky, D., Javanmardi, F., Jenney, A. W. J., Khorana, M., Khusuwan, S., Kissoon, N., Kobeissi, E., Kostyanev, T., Krapp, F., Krumkamp, R., Kumar, A., Kyu, H. H., Lim, C., Lim, K., Limmathurotsakul, D., Loftus, M. J., Lunn, M., Ma, J., Manoharan, A., Marks, F., May, J., Mayxay, M., Mturi, N., Munera-Huertas, T., Musicha, P., Musila, L. A., Mussi-Pinhata, M. M., Naidu, R. N., Nakamura, T., Nanavati, R., Nangia, S., Newton, P., Ngoun, C., Novotney, A., Nwakanma, D., Obiero, C. W., Ochoa, T. J., Olivas-Martinez, A., Olliaro, P., Ooko, E., Ortiz-Brizuela, E., Ounchanum, P., Pak, G. D., Paredes, J. L., Peleg, A. Y., Perrone, C., Phe, T., Phommasone, K., Plakkal, N., Ponce-de-Leon, A., Raad, M., Ramdin, T., Rattanavong, S., Riddell, A., Roberts, T., Robotham, J. V., Roca, A., Rosenthal, V. D., Rudd, K. E., Russell, N., Sader, H. S., Saengchan, W., Schnall, J., Scott, J. A. G., Seekaew, S., Sharland, M., Shivamallappa, M., Sifuentes-Osornio, J., Simpson, A. J., Steenkeste, N., Stewardson, A. J., Stoeva, T., Tasak, N., Thaiprakong, A., Thwaites, G., Tigoi, C., Turner, C., Turner, P., van Doorn, H. R., Velaphi, S., Vongpradith, A., Vongsouvath, M., Vu, H., Walsh, T., Walson, J. L., Waner, S., Wangrangsimakul, T., Wannapinij, P., Wozniak, T., Young Sharma, T. E. M. W., Yu, K. C., Zheng, P., Sartorius, B., Lopez, A. D., Stergachis, A., Moore, C., Dolecek, C. & Naghavi, M. (2022). Lancet, 399, 629–655.

NCBI Resource Coordinators (2016). Nucleic Acids Res. 44, D7–D19.

Neese, F., Wennmohs, F., Becker, U. & Riplinger, C. (2020). J. Chem. Phys. 152, 224108. PubMed

Nguyen, F., Starosta, A. L., Arenz, S., Sohmen, D., Dönhöfer, A. & Wilson, D. N. (2014). Biol. Chem. 395, 559–575. PubMed

O’Boyle, N. M., Banck, M., James, C. A., Morley, C., Vandermeersch, T. & Hutchison, G. R. (2011). J. Cheminform, 3, 33. PubMed PMC

O’Leary, N. A., Wright, M. W., Brister, J. R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., Astashyn, A., Badretdin, A., Bao, Y., Blinkova, O., Brover, V., Chetvernin, V., Choi, J., Cox, E., Ermolaeva, O., Farrell, C. M., Goldfarb, T., Gupta, T., Haft, D., Hatcher, E., Hlavina, W., Joardar, V. S., Kodali, V. K., Li, W., Maglott, D., Masterson, P., McGarvey, K. M., Murphy, M. R., O’Neill, K., Pujar, S., Rangwala, S. H., Rausch, D., Riddick, L. D., Schoch, C., Shkeda, A., Storz, S. S., Sun, H., Thibaud-Nissen, F., Tolstoy, I., Tully, R. E., Vatsan, A. R., Wallin, C., Webb, D., Wu, W., Landrum, M. J., Kimchi, A., Tatusova, T., DiCuccio, M., Kitts, P., Murphy, T. D. & Pruitt, K. D. (2016). Nucleic Acids Res. 44, D733–D745. PubMed PMC

Oscarsson, M., Beteva, A., Flot, D., Gordon, E., Guijarro, M., Leonard, G., McSweeney, S., Monaco, S., Mueller-Dieckmann, C., Nanao, M., Nurizzo, D., Popov, A., von Stetten, D., Svensson, O., Rey-Bakaikoa, V., Chado, I., Chavas, L., Gadea, L., Gourhant, P., Isabet, T., Legrand, P., Savko, M., Sirigu, S., Shepard, W., Thompson, A., Mueller, U., Nan, J., Eguiraun, M., Bolmsten, F., Nardella, A., Milàn-Otero, A., Thunnissen, M., Hellmig, M., Kastner, A., Schmuckermaier, L., Gerlach, M., Feiler, C., Weiss, M. S., Bowler, M. W., Gobbo, A., Papp, G., Sinoir, J., McCarthy, A., Karpics, I., Nikolova, M., Bourenkov, G., Schneider, T., Andreu, J., Cuní, G., Juanhuix, J., Boer, R., Fogh, R., Keller, P., Flensburg, C., Paciorek, W., Vonrhein, C., Bricogne, G. & de Sanctis, D. (2019). J. Synchrotron Rad. 26, 393–405. PubMed PMC

Pak, T. R., Altman, D. R., Attie, O., Sebra, R., Hamula, C. L., Lewis, M., Deikus, G., Newman, L. C., Fang, G., Hand, J., Patel, G., Wallach, F., Schadt, E. E., Huprikar, S., van Bakel, H., Kasarskis, A. & Bashir, A. (2015). Antimicrob. Agents Chemother. 59, 7117–7120. PubMed PMC

Park, J., Gasparrini, A. J., Reck, M. R., Symister, C. T., Elliott, J. L., Vogel, J. P., Wencewicz, T. A., Dantas, G. & Tolia, N. H. (2017). Nat. Chem. Biol. 13, 730–736. PubMed PMC

Paul, C. E., Eggerichs, D., Westphal, A. H., Tischler, D. & van Berkel, W. J. H. (2021). Biotechnol. Adv. 51, 107712. PubMed

Permala, R. R., Glady-Croue, J., Watkin, E. L. J., Ramsay, J. P. & Croue, J.-P. (2018). Microbiol. Resour. Announc. 7, e00914-18. PubMed PMC

Puigbò, P., Guzmán, E., Romeu, A. & Garcia-Vallvé, S. (2007). Nucleic Acids Res. 35, W126–W131. PubMed PMC

Rice, P., Longden, I. & Bleasby, A. (2000). Trends Genet. 16, 276–277. PubMed

Roach, D. J., Burton, J. N., Lee, C., Stackhouse, B., Butler-Wu, S. M., Cookson, B. T., Shendure, J. & Salipante, S. J. (2015). PLoS Genet. 11, e1005413. PubMed PMC

Rudra, P., Hurst-Hess, K., Lappierre, P. & Ghosh, P. (2018). Antimicrob. Agents Chemother. 62, e00119-18. PubMed PMC

Sánchez, M. B. (2015). Front. Microbiol. 6, 658. PubMed PMC

Sanner, M. F. (1999). J. Mol. Graph. Model. 17, 57–61. PubMed

Schwinn, K., Ferré, N. & Huix-Rotllant, M. (2020). Phys. Chem. Chem. Phys. 22, 12447–12455. PubMed

Sobolev, O. V., Afonine, P. V., Moriarty, N. W., Hekkelman, M. L., Joosten, R. P., Perrakis, A. & Adams, P. D. (2020). Structure, 28, 1249–1258. PubMed PMC

Sum, P.-E., Lee, V. J., Testa, R. T., Hlavka, J. J., Ellestad, G. A., Bloom, J. D., Gluzman, Y. & Tally, F. P. (1994). J. Med. Chem. 37, 184–188. PubMed

Švecová, L., Østergaard, L. H., Skálová, T., Schnorr, K. M., Koval’, T., Kolenko, P., Stránský, J., Sedlák, D., Dušková, J., Trundová, M., Hašek, J. & Dohnálek, J. (2021). Acta Cryst. D77, 755–775. PubMed PMC

Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N. W., Adams, P. D., Read, R. J., Zwart, P. H. & Hung, L.-W. (2008). Acta Cryst. D64, 515–524. PubMed PMC

Tickle, I. J., Flensburg, C., Keller, P., Paciorek, W., Sharff, A., Vonrhein, C. & Bricogne, G. (2018). STARANISO. Cambridge: Global Phasing Ltd.

Toplak, M., Matthews, A. & Teufel, R. (2021). Arch. Biochem. Biophys. 698, 108732. PubMed

Tropea, J. E., Cherry, S. & Waugh, D. S. (2009). Methods Mol. Biol. 498, 297–307. PubMed

Trott, O. & Olson, A. J. (2010). J. Comput. Chem. 31, 455–461. PubMed PMC

Vagin, A. & Lebedev, A. (2015). Acta Cryst. A71, s19.

Volkers, G., Damas, J. M., Palm, G. J., Panjikar, S., Soares, C. M. & Hinrichs, W. (2013). Acta Cryst. D69, 1758–1767. PubMed

Volkers, G., Palm, G. J., Weiss, M. S., Wright, G. D. & Hinrichs, W. (2011). FEBS Lett. 585, 1061–1066. PubMed

Walkiewicz, K., Davlieva, M., Wu, G. & Shamoo, Y. (2011). Proteins, 79, 2335–2340. PubMed PMC

Williams, C. J., Headd, J. J., Moriarty, N. W., Prisant, M. G., Videau, L. L., Deis, L. N., Verma, V., Keedy, D. A., Hintze, B. J., Chen, V. B., Jain, S., Lewis, S. M., Arendall, W. B., Snoeyink, J., Adams, P. D., Lovell, S. C., Richardson, J. S. & Richardson, D. C. (2018). Protein Sci. 27, 293–315. PubMed PMC

Yaghoubi, S., Zekiy, A. O., Krutova, M., Gholami, M., Kouhsari, E., Sholeh, M., Ghafouri, Z. & Maleki, F. (2022). Eur. J. Clin. Microbiol. Infect. Dis. 41, 1003–1022. PubMed PMC

Yang, W., Moore, I. F., Koteva, K. P., Bareich, D. C., Hughes, D. W. & Wright, G. D. (2004). J. Biol. Chem. 279, 52346–52352. PubMed

Zhao, J., Liu, Y., Liu, Y., Wang, D., Ni, W., Wang, R., Liu, Y. & Zhang, B. (2018). Front. Microbiol. 9, 549. PubMed PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...