Tandem gene amplification restores photosystem II accumulation in cytochrome b559 mutants of cyanobacteria

. 2022 Jan ; 233 (2) : 766-780. [epub] 20211030

Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid34625967

Cytochrome (Cyt) b559 is a key component of the photosystem II complex (PSII) that is essential for its proper functioning and assembly. Site-directed mutants of the model cyanobacterium Synechocystis sp. PCC6803 with mutated heme axial ligands of Cyt b559 have little PSII and are therefore unable to grow photoautotrophically. Here we describe two types of Synechocystis autotrophic transformants that retained the same mutations in Cyt b559 but are able to accumulate PSII and grow photoautotrophically. Whole-genome sequencing revealed that all of these autotrophic transformants carried a variable number of tandem repeats (from 5 to 15) of chromosomal segments containing the psbEFLJ operon. RNA-seq analysis showed greatly increased transcript levels of the psbEFLJ operon in these autotrophic transformants. Multiple copies of the psbEFLJ operon in these transformants were only maintained during autotrophic growth, while its copy numbers gradually decreased under photoheterotrophic conditions. Two-dimensional PAGE analysis of membrane proteins revealed a strong deficiency in PSII complexes in the Cyt b559 mutants that was reversed in the autotrophic transformants. These results illustrate how tandem gene amplification restores PSII accumulation and photoautotrophic growth in Cyt b559 mutants of cyanobacteria, and may serve as an important adaptive mechanism for cyanobacterial survival.

Zobrazit více v PubMed

Andersson DI, Hughes D. 2013. Gene amplification and adaptive evolution in bacteria. Annual Review of Genetics 43: 167–195. PubMed

Andrizhiyevskaya EG, Chojnicka A, Bautista JA, Diner BA, van Grondelle R, Dekker JP. 2005. Origin of the F685 and F695 fluorescence in photosystem II. Photosynthesis Research 84: 173–180. PubMed

Barber J. 2006. Photosystem II: an enzyme of global significance. Biochemical Society Transactions 34: 619–631. PubMed

Barber J, De Las RJ. 1993. A functional model for the role of cytochrome b 559 in the protection against donor and acceptor side photoinhibition. Proceedings of the National Academy of Sciences, USA 90: 10942–10946. PubMed PMC

Bersanini L, Battchikova N, Jokel M, Rehman A, Vass I, Allahverdiyeva Y, Aro E‐M. 2014. Flavodiiron protein Flv2/Flv4‐related photoprotective mechanism dissipates excitation pressure of PSII in cooperation with phycobilisomes in cyanobacteria. Plant Physiology 164: 805–818. PubMed PMC

Boehm M, Romero E, Reisinger V, Yu J, Komenda J, Eichacker LA, Dekker JP, Nixon PJ. 2011. Investigating the early stages of photosystem II assembly in Synechocystis sp. PCC 6803 isolation of CP47 and CP43 complexes. Journal of Biological Chemistry 286: 14812–14819. PubMed PMC

Bondarava N, De Pascalis L, Al‐Babili S, Goussias C, Golecki JR, Beyer P, Bock R, Krieger‐Liszkay A. 2003. Evidence that cytochrome b 559 mediates the oxidation of reduced plastoquinone in the dark. Journal of Biological Chemistry 278: 13554–13560. PubMed

Büsch A, Friedrich B, Cramm R. 2002. Characterization of the norB gene encoding nitric oxide reductase in the nondenitrifying cyanobacterium Synechocystis sp. strain PCC6803. Applied Environmental Microbiology 68: 668–672. PubMed PMC

Calzadilla PI, Kirilovsky D. 2020. Revisiting cyanobacterial state transitions. Photochemical & Photobiological Science 19: 585–603. PubMed

Chin C‐S, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE et al. 2013. Nonhybrid, finished microbial genome assemblies from long‐read SMRT sequencing data. Nature Methods 10: 563–569. PubMed

Chu H‐A, Chang I, Shen C, Chen Y‐H, Wang H, Huang L, Yeh K. 2012. Photosynthetic properties and photosystem stoichiometry of in vitro‐grown juvenile, adult, and rejuvenated Sequoia sempervirens (D. Don) Endl. Botanical Studies 53: 223–227.

Chiu Y‐F, Chen Y‐H, Roncel M, Dilbeck PL, Huang J‐Y, Ke S‐C, Ortega JM, Burnap RL, Chu H‐A. 2013. Spectroscopic and functional characterization of cyanobacterium Synechocystis PCC 6803 mutants on the cytoplasmic‐side of cytochrome b 559 in photosystem II. Biochimica et Biophysica Acta 1827: 507–519. PubMed

Chu H‐A, Chiu Y‐F. 2016. The roles of cytochrome b 559 in assembly and photoprotection of photosystem II revealed by site‐directed mutagenesis studies. Frontiers in Plant Science 6: 1261–1267. PubMed PMC

Chu H‐A, Nguyen AP, Debus RJ. 1994. Site‐directed photosystem II mutants with perturbed oxygen‐evolving properties. 1. Instability or inefficient assembly of the manganese cluster in vivo. Biochemistry 33: 6137–6149. PubMed

Daley SME, Kappell AD, Carrick MJ, Burnap RL. 2012. Regulation of the cyanobacterial CO2‐concentrating mechanism involves internal sensing of NADP+ and α‐ketogutarate levels by transcription factor CcmR. PLoS ONE 7: e41286–e41295. PubMed PMC

Dobáková M, Tichý M, Komenda J. 2007. Role of the psbI protein in photosystem II assembly and repair in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiology 145: 1681–1691. PubMed PMC

Elliott KT, Cuff LE, Neidle EL. 2013. Copy number change: evolving views on gene amplification. Future Microbiology 8: 887–899. PubMed

He Q, Dolganov N, Björkman O, Grossman AR. 2001. The high light‐inducible polypeptides in Synechocystis PCC6803: expression and function in high light. Journal of Biological Chemistry 276: 306–314. PubMed

Huang J‐Y, Chiu Y‐F, Ortega JM, Wang H‐T, Tseng T‐S, Ke S‐C, Roncel M, Chu H‐A. 2016. Mutations of cytochrome b 559 and psbJ on and near the QC site in photosystem II influence the regulation of short‐term light response and photosynthetic growth of the cyanobacterium Synechocystis sp. PCC 6803. Biochemistry 55: 2214–2226. PubMed

Huang J‐Y, Hung N‐T, Lin K‐M, Chiu Y‐F, Chu H‐A. 2018. Regulating photoprotection improves photosynthetic growth and biomass production in QC‐site mutant cells of the cyanobacterium Synechocystis sp. PCC 6803. Photosynthetica 56: 192–199.

Hung C‐H, Huang J‐Y, Chiu Y‐F, Chu H‐A. 2007. Site‐directed mutagenesis on the heme axial‐ligands of cytochrome b 559 in photosystem II by using cyanobacteria Synechocystis PCC 6803. Biochimica et Biophysica Acta 1767: 686–693. PubMed

Hung C‐H, Hwang H‐J, Chen Y‐H, Chiu Y‐F, Ke S‐C, Burnap RL, Chu H‐A. 2010. Spectroscopic and functional characterizations of cyanobacterium Synechocystis PCC 6803 mutants on and near the heme axial ligand of cytochrome b 559 in photosystem II. Journal of Biological Chemistry 285: 5653–5663. PubMed PMC

Kiss É, Knoppová J, Aznar GP, Pilný J, Yu J, Halada P, Nixon PJ, Sobotka R, Komenda J. 2019. A photosynthesis‐specific rubredoxin‐like protein is required for efficient association of the D1 and D2 proteins during the initial steps of photosystem II assembly. Plant Cell 31: 2241–2258. PubMed PMC

Komenda J, Barker M, Kuviková S, de Vries R, Mullineaux CW, Tichý M, Nixon PJ. 2006. The ftsH protease slr0228 is important for quality control of photosystem II in the thylakoid membrane of Synechocystis sp. PCC 6803. Journal of Biological Chemistry 281: 1145–1151. PubMed

Komenda J, Nickelsen J, Tichý M, Prášil O, Eichacker LA, Nixon PJ. 2008. The cyanobacterial homologue of HCF136/YCF48 is a component of an early photosystem II assembly complex and is important for both the efficient assembly and repair of photosystem II in Synechocystis sp. PCC 6803. Journal of Biological Chemistry 283: 22390–22399. PubMed

Komenda J, Reisinger V, Muller BC, Dobakova M, Granvogl B, Eichacker LA. 2004. Accumulation of the D2 protein is a key regulatory step for assembly of the photosystem II reaction center complex in Synechocystis PCC 6803. Journal of Biological Chemistry 279: 48620–48629. PubMed

Kondo K, Ochiai Y, Katayama M, Ikeuchi M. 2007. The membrane‐associated CpcG2‐phycobilisome in Synechocystis: a new photosystem I antenna. Plant Physiology 144: 1200–1210. PubMed PMC

Lamb JJ, Rokke G, Hohmann‐Marriott MF. 2018. Chlorophyll fluorescence emission spectroscopy of oxygenic organisms at 77 K. Photosynthetica 56: 105–124.

Morais F, Barber J, Nixon PJ. 1998. The chloroplast‐encoded α subunit of cytochrome b‐559 is required for assembly of the photosystem two complex in both the light and the dark in Chlamydomonas reinhardtii . Journal of Biological Chemistry 273: 29315–29320. PubMed

Müller B, Eichacker LA. 1999. Assembly of the D1 precursor in monomeric photosystem II reaction center precomplexes precedes chlorophylla triggered accumulation of reaction center II in barley etioplasts. Plant Cell 11: 2365–2377. PubMed PMC

Nickelsen J, Rengstl B. 2013. Photosystem II assembly: from cyanobacteria to plants. Annual Review of Plant Biology 64: 609–635. PubMed

Nixon PJ, Michoux F, Yu J, Boehm M, Komenda J. 2010. Recent advances in understanding the assembly and repair of photosystem II. Annals of Botany 106: 1–16. PubMed PMC

Ohad I, Dal Bosco C, Herrmann RG, Meurer J. 2004. Photosystem II proteins PsbL and PsbJ regulate electron flow to the plastoquinone pool. Biochemistry 43: 2297–2308. PubMed

Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T. 1999. Identification of an ATP‐binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942. Proceedings of the National Academy of Sciences, USA 96: 13571–13576. PubMed PMC

Pakrasi HB, Ciechi PD, Whitmarsh J. 1991. Site directed mutagenesis of the heme axial ligands of cytochrome b 559 affects the stability of the photosystem II complex. EMBO Journal 10: 1619–1627. PubMed PMC

Pakrasi HB, Williams JG, Arntzen CJ. 1988. Targeted mutagenesis of the psbE and psbF genes blocks photosynthetic electron transport: evidence for a functional role of cytochrome b 559 in photosystem II. EMBO Journal 7: 325–332. PubMed PMC

Reams A, Roth J. 2015. Mechanisms of gene duplication and amplification. Cold Spring Harbor Perspectives in Biology 7: a016592–a016616. PubMed PMC

Shimakawa G, Shaku K, Nishi A, Hayashi R, Yamamoto H, Sakamoto K, Makino A, Miyake C. 2015. Flavodiiron2 and flavodiiron 4 proteins mediate an oxygen‐dependent alternative electron flow in Synechocystis sp. PCC 6803 under CO2‐limited conditions. Plant Physiology 167: 472–480. PubMed PMC

Shinopoulos KE, Brudvig GW. 2012. Cytochrome b 559 and cyclic electron transfer within photosystem II. Biochimica et Biophysica Acta 1817: 66–75. PubMed

Sugiura M, Nakamura M, Koyama K, Boussac A. 2015. Assembly of oxygen‐evolving photosystem II efficiently occurs with the apo‐Cytb 559 but the holo‐Cytb 559 accelerates the recovery of a functional enzyme upon photoinhibition. Biochimica et Biophysica Acta 1847: 276–285. PubMed

Swiatek M, Regel RE, Meurer J, Wanner G, Pakrasi HB, Ohad I, Herrmann RG. 2003. Effects of selective inactivation of individual genes for low‐molecular‐mass subunits on the assembly of photosystem II, as revealed by chloroplast transformation: the psbEFLJ operon in Nicotiana tabacum . Molecular Genetics and Genomics 268: 699–710. PubMed

Thomas JC, Ughy B, Lagoutte B, Ajlani G. 2006. A second isoform of the ferredoxin:NADP oxidoreductase generated by an in‐frame initiation of translation. Proceedings of the National Academy of Sciences, USA 103, 18368–18373. PubMed PMC

Tichy M, Beckova M, Kopecna J, Noda J, Sobotka R, Komenda J. 2016. Strain of Synechocystis PCC 6803 with aberrant assembly of photosystem II contains tandem duplication of a large chromosomal region. Frontiers in Plant Science 7: 648–657. PubMed PMC

Tokumaru Y, Uebayashi K, Toyoshima M, Osanai T, Matsuda F, Shimizu H. 2018. Comparative targeted proteomics of the central metabolism and photosystems in SigE mutant strains of Synechocystis sp. PCC 6803. Molecules 23: 1051. PubMed PMC

Ughy B, Ajlani G. 2004. Phycobilisome rod mutants in Synechocystis sp. strain PCC6803. Microbiology 150: 4147–4156. PubMed

Umena Y, Kawakami K, Shen JR, Kamiya N. 2011. Crystal structure of oxygen‐evolving photosystem II at a resolution of 1.9 Å. Nature 473: 55–60. PubMed

Wang C, Sun B, Zhang X, Huang X, Zhang M, Guo H, Chen X, Huang F, Chen T, Mi H et al. 2019. Structural mechanism of the active bicarbonate transporter from cyanobacteria. Nature Plants 5: 1184–1193. PubMed

Zabret J, Bohn S, Schuller SK, Arnolds O, Möller M, Meier‐Credo J, Liauw P, Chan A, Tajkhorshid E, Langer JD et al. 2021. Structural insights into photosystem II assembly. Nature Plants 7: 524–538. PubMed PMC

Zhang P, Battchikova N, Jansen T, Appel J, Ogawa T, Aro EM. 2004. Expression and functional roles of the two distinct NDH‐1 complexes and the carbon acquisition complex NdhD3/NdhF3/CupA/Sll1735 in Synechocystis sp PCC 6803. Plant Cell 16: 3326–3340. PubMed PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

    Možnosti archivace