The nascent polypeptide-associated complex (NAC) controls translation initiation in cis by recruiting nucleolin to the encoding mRNA

. 2022 Sep 23 ; 50 (17) : 10110-10122.

Jazyk angličtina Země Velká Británie, Anglie Médium print

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid36107769

Protein aggregates and abnormal proteins are toxic and associated with neurodegenerative diseases. There are several mechanisms to help cells get rid of aggregates but little is known on how cells prevent aggregate-prone proteins from being synthesised. The EBNA1 of the Epstein-Barr virus (EBV) evades the immune system by suppressing its own mRNA translation initiation in order to minimize the production of antigenic peptides for the major histocompatibility (MHC) class I pathway. Here we show that the emerging peptide of the disordered glycine-alanine repeat (GAr) within EBNA1 dislodges the nascent polypeptide-associated complex (NAC) from the ribosome. This results in the recruitment of nucleolin to the GAr-encoding mRNA and suppression of mRNA translation initiation in cis. Suppressing NAC alpha (NACA) expression prevents nucleolin from binding to the GAr mRNA and overcomes GAr-mediated translation inhibition. Taken together, these observations suggest that EBNA1 exploits a nascent protein quality control pathway to regulate its own rate of synthesis that is based on sensing the nascent GAr peptide by NAC followed by the recruitment of nucleolin to the GAr-encoding RNA sequence.

Zobrazit více v PubMed

Candelise N., Scaricamazza S., Salvatori I., Ferri A., Valle C., Manganelli V., Garofalo T., Sorice M., Misasi R.. Protein aggregation landscape in neurodegenerative diseases: clinical relevance and future applications. Int. J. Mol. Sci. 2021; 22:6016. PubMed PMC

Mogk A., Bukau B., Kampinga H.H.. Cellular handling of protein aggregates by disaggregation machines. Mol. Cell. 2018; 69:214–226. PubMed

Goncalves C.C., Sharon I., Schmeing T.M., Ramos C.H.I., Young J.C.. The chaperone HSPB1 prepares protein aggregates for resolubilization by HSP70. Sci. Rep. 2021; 11:17139. PubMed PMC

Genest O., Wickner S., Doyle S.M.. Hsp90 and hsp70 chaperones: collaborators in protein remodeling. J. Biol. Chem. 2019; 294:2109–2120. PubMed PMC

Mizuno M., Ebine S., Shounai O., Nakajima S., Tomomatsu S., Ikeuchi K., Matsuo Y., Inada T.. The nascent polypeptide in the 60S subunit determines the Rqc2-dependency of ribosomal quality control. Nucleic Acids Res. 2021; 49:2102–2113. PubMed PMC

Joazeiro C.A.P. Mechanisms and functions of ribosome-associated protein quality control. Nat. Rev. Mol. Cell Biol. 2019; 20:368–383. PubMed PMC

Stein K.C., Frydman J.. The stop-and-go traffic regulating protein biogenesis: how translation kinetics controls proteostasis. J. Biol. Chem. 2019; 294:2076–2084. PubMed PMC

Chandrasekaran V., Juszkiewicz S., Choi J., Puglisi J.D., Brown A., Shao S., Ramakrishnan V., Hegde R.S.. Mechanism of ribosome stalling during translation of a poly(A) tail. Nat. Struct. Mol. Biol. 2019; 26:1132–1140. PubMed PMC

Deuerling E., Gamerdinger M., Kreft S.G.. Chaperone interactions at the ribosome. Cold Spring Harb. Perspect. Biol. 2019; 11:a033977. PubMed PMC

Liu Y., Hu Y., Li X., Niu L., Teng M.. The crystal structure of the human nascent polypeptide-associated complex domain reveals a nucleic acid-binding region on the NACA subunit. Biochemistry. 2010; 49:2890–2896. PubMed

Gamerdinger M., Kobayashi K., Wallisch A., Kreft S.G., Sailer C., Schlomer R., Sachs N., Jomaa A., Stengel F., Ban N.et al. .. Early scanning of nascent polypeptides inside the ribosomal tunnel by NAC. Mol. Cell. 2019; 75:996–1006. PubMed

del Alamo M., Hogan D.J., Pechmann S., Albanese V., Brown P.O., Frydman J.. Defining the specificity of cotranslationally acting chaperones by systematic analysis of mRNAs associated with ribosome-nascent chain complexes. PLoS Biol. 2011; 9:e1001100. PubMed PMC

Wang S., Sakai H., Wiedmann M.. NAC covers ribosome-associated nascent chains thereby forming a protective environment for regions of nascent chains just emerging from the peptidyl transferase center. J. Cell Biol. 1995; 130:519–528. PubMed PMC

Martin E.M., Jackson M.P., Gamerdinger M., Gense K., Karamonos T.K., Humes J.R., Deuerling E., Ashcroft A.E., Radford S.E.. Conformational flexibility within the nascent polypeptide-associated complex enables its interactions with structurally diverse client proteins. J. Biol. Chem. 2018; 293:8554–8568. PubMed PMC

Shen K., Gamerdinger M., Chan R., Gense K., Martin E.M., Sachs N., Knight P.D., Schlomer R., Calabrese A.N., Stewart K.L.et al. .. Dual role of ribosome-binding domain of NAC as a potent suppressor of protein aggregation and aging-related proteinopathies. Mol. Cell. 2019; 74:729–741. PubMed PMC

Kirstein-Miles J., Scior A., Deuerling E., Morimoto R.I.. The nascent polypeptide-associated complex is a key regulator of proteostasis. EMBO J. 2013; 32:1451–1468. PubMed PMC

Fabbri L., Chakraborty A., Robert C., Vagner S.. The plasticity of mRNA translation during cancer progression and therapy resistance. Nat. Rev. Cancer. 2021; 21:558–577. PubMed

Holcik M., Sonenberg N.. Translational control in stress and apoptosis. Nat. Rev. Mol. Cell Biol. 2005; 6:318–327. PubMed

Sysoev V.O., Fischer B., Frese C.K., Gupta I., Krijgsveld J., Hentze M.W., Castello A., Ephrussi A.. Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in drosophila. Nat. Commun. 2016; 7:12128. PubMed PMC

Garcia-Moreno M., Noerenberg M., Ni S., Jarvelin A.I., Gonzalez-Almela E., Lenz C.E., Bach-Pages M., Cox V., Avolio R., Davis T.et al. .. System-wide profiling of RNA-Binding proteins uncovers key regulators of virus infection. Mol. Cell. 2019; 74:196–211. PubMed PMC

Beaudoin J.D., Novoa E.M., Vejnar C.E., Yartseva V., Takacs C.M., Kellis M., Giraldez A.J.. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Nat. Struct. Mol. Biol. 2018; 25:677–686. PubMed PMC

Lista M.J., Martins R.P., Billant O., Contesse M.A., Findakly S., Pochard P., Daskalogianni C., Beauvineau C., Guetta C., Jamin C.et al. .. Nucleolin directly mediates epstein-barr virus immune evasion through binding to G-quadruplexes of EBNA1 mRNA. Nat. Commun. 2017; 8:16043. PubMed PMC

Yin Y., Manoury B., Fahraeus R.. Self-inhibition of synthesis and antigen presentation by epstein-barr virus-encoded EBNA1. Science. 2003; 301:1371–1374. PubMed

Apcher S., Daskalogianni C., Manoury B., Fahraeus R.. Epstein barr virus-encoded EBNA1 interference with MHC class i antigen presentation reveals a close correlation between mRNA translation initiation and antigen presentation. PLoS Pathog. 2010; 6:e1001151. PubMed PMC

Murat P., Zhong J., Lekieffre L., Cowieson N.P., Clancy J.L., Preiss T., Balasubramanian S., Khanna R., Tellam J.. G-quadruplexes regulate epstein-barr virus-encoded nuclear antigen 1 mRNA translation. Nat. Chem. Biol. 2014; 10:358–364. PubMed PMC

Apcher S., Komarova A., Daskalogianni C., Yin Y., Malbert-Colas L., Fahraeus R.. mRNA translation regulation by the gly-ala repeat of epstein-barr virus nuclear antigen 1. J. Virol. 2009; 83:1289–1298. PubMed PMC

Kikin O., D’Antonio L., Bagga P.S.. QGRS mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res. 2006; 34:W676–W682. PubMed PMC

Hon J., Marusiak M., Martinek T., Kunka A., Zendulka J., Bednar D., Damborsky J.. SoluProt: prediction of soluble protein expression in escherichia coli. Bioinformatics. 2021; 37:23–28. PubMed PMC

Martins R.P., Malbert-Colas L., Lista M.J., Daskalogianni C., Apcher S., Pla M., Findakly S., Blondel M., Fahraeus R.. Nuclear processing of nascent transcripts determines synthesis of full-length proteins and antigenic peptides. Nucleic Acids Res. 2019; 47:3086–3100. PubMed PMC

Apcher S., Daskalogianni C., Lejeune F., Manoury B., Imhoos G., Heslop L., Fahraeus R.. Major source of antigenic peptides for the MHC class i pathway is produced during the pioneer round of mRNA translation. Proc. Natl. Acad. Sci. U.S.A. 2011; 108:11572–11577. PubMed PMC

McQuin C., Goodman A., Chernyshev V., Kamentsky L., Cimini B.A., Karhohs K.W., Doan M., Ding L., Rafelski S.M., Thirstrup D.et al. .. CellProfiler 3.0: Next-generation image processing for biology. PLoS Biol. 2018; 16:e2005970. PubMed PMC

Zheng A.J., Thermou A., Guixens Gallardo P., Malbert-Colas L., Daskalogianni C., Vaudiau N., Brohagen P., Granzhan A., Blondel M., Teulade-Fichou M.P.et al. .. The different activities of RNA G-quadruplex structures are controlled by flanking sequences. Life Sci. Alliance. 2022; 5:e202101232. PubMed PMC

Guo B., Huang J., Wu W., Feng D., Wang X., Chen Y., Zhang H.. The nascent polypeptide-associated complex is essential for autophagic flux. Autophagy. 2014; 10:1738–1748. PubMed PMC

Tovar Fernandez M.C., Sroka E.M., Lavigne M., Thermou A., Daskalogianni C., Manoury B., Prado Martins R., Fahraeus R.. Substrate-specific presentation of MHC class I-restricted antigens via autophagy pathway. Cell. Immunol. 2022; 374:104484. PubMed

Meury T., Akhouayri O., Jafarov T., Mandic V., St-Arnaud R.. Nuclear alpha NAC influences bone matrix mineralization and osteoblast maturation in vivo. Mol. Cell. Biol. 2010; 30:43–53. PubMed PMC

Lin Z., Gasic I., Chandrasekaran V., Peters N., Shao S., Mitchison T.J., Hegde R.S.. TTC5 mediates autoregulation of tubulin via mRNA degradation. Science. 2020; 367:100–104. PubMed PMC

Herviou P., Le Bras M., Dumas L., Hieblot C., Gilhodes J., Cioci G., Hugnot J.P., Ameadan A., Guillonneau F., Dassi E.et al. .. hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma. Nat. Commun. 2020; 11:2661. PubMed PMC

Benhalevy D., Gupta S.K., Danan C.H., Ghosal S., Sun H.W., Kazemier H.G., Paeschke K., Hafner M., Juranek S.A.. The human CCHC-type zinc finger nucleic acid-binding protein binds G-Rich elements in target mRNA coding sequences and promotes translation. Cell Rep. 2017; 18:2979–2990. PubMed PMC

Lista M.J., Voisset C., Contesse M.A., Friocourt G., Daskalogianni C., Bihel F., Fahraeus R., Blondel M.. The long-lasting love affair between the budding yeast saccharomyces cerevisiae and the epstein-barr virus. Biotechnol. J. 2015; 10:1670–1681. PubMed

Kearse M.G., Wilusz J.E.. Non-AUG translation: a new start for protein synthesis in eukaryotes. Genes Dev. 2017; 31:1717–1731. PubMed PMC

Todd P.K., Oh S.Y., Krans A., He F., Sellier C., Frazer M., Renoux A.J., Chen K.C., Scaglione K.M., Basrur V.et al. .. CGG repeat-associated translation mediates neurodegeneration in fragile x tremor ataxia syndrome. Neuron. 2013; 78:440–455. PubMed PMC

Cleary J.D., Pattamatta A., Ranum L.P.W.. Repeat-associated non-ATG (RAN) translation. J. Biol. Chem. 2018; 293:16127–16141. PubMed PMC

Fratta P., Mizielinska S., Nicoll A.J., Zloh M., Fisher E.M., Parkinson G., Isaacs A.M.. C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes. Sci. Rep. 2012; 2:1016. PubMed PMC

Ofer N., Weisman-Shomer P., Shklover J., Fry M.. The quadruplex r(CGG)n destabilizing cationic porphyrin TMPyP4 cooperates with hnRNPs to increase the translation efficiency of fragile x premutation mRNA. Nucleic Acids Res. 2009; 37:2712–2722. PubMed PMC

Kharel P., Becker G., Tsvetkov V., Ivanov P.. Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back. Nucleic Acids Res. 2020; 48:12534–12555. PubMed PMC

Ash P.E., Bieniek K.F., Gendron T.F., Caulfield T., Lin W.L., Dejesus-Hernandez M., van Blitterswijk M.M., Jansen-West K., Paul J.W.,3rd, Rademakers R.et al. .. Unconventional translation of C9ORF72 GGGGCC expansion generates insoluble polypeptides specific to c9FTD/ALS. Neuron. 2013; 77:639–646. PubMed PMC

Mori K., Arzberger T., Grasser F.A., Gijselinck I., May S., Rentzsch K., Weng S.M., Schludi M.H., van der Zee J., Cruts M.et al. .. Bidirectional transcripts of the expanded C9orf72 hexanucleotide repeat are translated into aggregating dipeptide repeat proteins. Acta Neuropathol. 2013; 126:881–893. PubMed

Najít záznam

Citační ukazatele

Nahrávání dat ...

    Možnosti archivace