SILAC-IodoTMT for Assessment of the Cellular Proteome and Its Redox Status

Jazyk angličtina Země Spojené státy americké Médium print

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid36370286

Stable isotope labeling by amino acids in cell culture (SILAC) and iodoacetyl tandem mass tag (iodoTMT) are well-implemented mass spectrometry-based approaches for quantification of proteins and for site-mapping of cysteine modification. We describe here a combination of SILAC and iodoTMT to assess ongoing changes in the global proteome and cysteine modification levels using liquid chromatography separation coupled with high-resolution mass spectrometry (LC-MS/MS).

Zobrazit více v PubMed

Ong S-E, Blagoev B, Kratchmarova I et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376–386 PubMed DOI

Qu Z, Meng F, Bomgarden RD et al (2014) Proteomic quantification and site-mapping of S-nitrosylated proteins using isobaric iodoTMT reagents. J Proteome Res 13:3200–3211 PubMed DOI PMC

Vajrychova M, Salovska B, Pimkova K et al (2019) Quantification of cellular protein and redox imbalance using SILAC-iodoTMT methodology. Redox Biol 24:101227 PubMed DOI PMC

Roumeliotis TI, Weisser H, Choudhary JS (2019) Evaluation of a dual isolation width acquisition method for isobaric labeling ratio decompression. J Proteome Res 18:1433–1440 PubMed DOI

Rauniyar N, Yates JR (2014) Isobaric labeling-based relative quantification in shotgun proteomics. J Proteome Res 13:5293–5309 PubMed DOI PMC

Shakir S, Vinh J, Chiappetta G (2017) Quantitative analysis of the cysteine redoxome by iodoacetyl tandem mass tags. Anal Bioanal Chem 409:3821–3830 PubMed DOI PMC

Cox J, Mann M (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26:1367–1372 PubMed DOI

Tyanova S, Temu T, Sinitcyn P et al (2016) The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat Methods 13:731–740 PubMed DOI

Lössner C, Warnken U, Pscherer A et al (2011) Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions. Anal Biochem 412:123–125 PubMed DOI

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...