Telomeres expand sphere of influence: emerging molecular impact of telomeres in non-telomeric functions
Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic
Typ dokumentu časopisecké články, přehledy, práce podpořená grantem
Grantová podpora
Wellcome Trust - United Kingdom
IA/S/18/2/504021
DBT-Wellcome Trust India Alliance - India
PubMed
36404192
PubMed Central
PMC7614491
DOI
10.1016/j.tig.2022.10.002
PII: S0168-9525(22)00250-5
Knihovny.cz E-zdroje
- Klíčová slova
- G-quadruplex, TRF2, aging, cancer, gene-regulation, non-telomeric function, pluripotency, telomere signaling, telomeric factors,
- MeSH
- DNA metabolismus MeSH
- G-kvadruplexy * MeSH
- heterochromatin MeSH
- telomery * genetika metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
- Názvy látek
- DNA MeSH
- heterochromatin MeSH
Although the impact of telomeres on physiology stands well established, a question remains: how do telomeres impact cellular functions at a molecular level? This is because current understanding limits the influence of telomeres to adjacent subtelomeric regions despite the wide-ranging impact of telomeres. Emerging work in two distinct aspects offers opportunities to bridge this gap. First, telomere-binding factors were found with non-telomeric functions. Second, locally induced DNA secondary structures called G-quadruplexes are notably abundant in telomeres, and gene regulatory regions genome wide. Many telomeric factors bind to G-quadruplexes for non-telomeric functions. Here we discuss a more general model of how telomeres impact the non-telomeric genome - through factors that associate at telomeres and genome wide - and influence cell-intrinsic functions, particularly aging, cancer, and pluripotency.
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O'Sullivan RJ, Karlseder J. Telomeres: protecting chromosomes against genome instability. Nat Rev Mol Cell Biol. 2010;11:171. PubMed PMC
Griffith JD, et al. Mammalian telomeres end in a large duplex loop. Cell. 1999;97:503–514. PubMed
Sundquist WI, Klug A. Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops. Nature. 1989;342:825–829. PubMed
Lipps HJ, Rhodes D. G-quadruplex structures: in vivo evidence and function. Trends Cell Biol. 2009;19:414–422. PubMed
Bochman ML, et al. DNA secondary structures: stability and function of G-quadruplex structures. Nat Rev Genet. 2012;13:770–780. PubMed PMC
Brázda V, et al. DNA and RNA quadruplex-binding proteins. Int J Mol Sci. 2014;15:17493. PubMed PMC
Ye J, et al. Transcriptional outcome of telomere signalling. Nat Rev Genet. 2014;15:491–503. PubMed
Henderson E, et al. Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs. Cell. 1987;51:899–908. PubMed
Huppert JL, Balasubramanian S. Prevalence of quadruplexes in the human genome. Nucleic Acids Res. 2005;33:2908–2916. PubMed PMC
Rawal P, et al. Genome-widepredictionofG4DNAas regulatory motifs: role in Escherichia coli global regulation. Genome Res. 2006;16:644–655. PubMed PMC
Verma A, et al. Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species. J Med Chem. 2008;51:5641–5649. PubMed
Mukherjee AK, et al. Non-duplex G-quadruplex structures emerge as mediators of epigenetic modifications. Trends Genet. 2019;35:129. PubMed PMC
Martinez P, et al. Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites. Nat Cell Biol. 2010;12:768–780. PubMed PMC
Simonet T, et al. The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats. Cell Res. 2011;21:1028–1038. PubMed PMC
Yang D, et al. Human telomeric proteins occupy selective interstitial sites. Cell Res. 2011;21:1013–1027. PubMed PMC
Zhang X, et al. Telomere-dependent and telomereindependent roles of RAP1 in regulating human stem cell homeostasis. Protein Cell. 2019;10:649–667. PubMed PMC
Yeung F, et al. Nontelomeric role for Rap1 in regulating metabolism and protecting against obesity. Cell Rep. 2013;3:1847. PubMed PMC
Martínez P, et al. RAP1 protects from obesity through its extratelomeric role regulating gene expression. Cell Rep. 2013;3:2059–2074. PubMed PMC
Teo H, et al. Telomere-independent Rap1 is an IKK adaptor and regulates NF-KB-dependent gene expression. Nat Cell Biol. 2010;12:758–767. PubMed
Mukherjee AK, et al. Telomere repeat-binding factor 2 binds extensively to extra-telomeric G-quadruplexes and regulates the epigenetic status of several gene promoters. J Biol Chem. 2019;294:17709–17722. PubMed PMC
El Maï M, et al. The telomeric protein TRF2 regulates angiogenesis by binding and activating the PDGFRβ promoter. Cell Rep. 2014;9:1047–1060. PubMed
Purohit G, et al. Extratelomeric binding of the telomere binding protein TRF2 at the PCGF3 promoter is g-quadruplex motif-dependent. Biochemistry. 2018;57:2317–2324. PubMed
Hussain T, et al. Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex. Sci Rep. 2017;7:11541. PubMed PMC
Sharma S, et al. Human telomerase is directly regulated by non-telomeric TRF2-G-quadruplex interaction. Cell Rep. 2021;35:109154. PubMed PMC
Kishore Mukherjee A, et al. bioRxiv. Published online December 8, 2021; 2021. Telomere-dependent interleukin-1 receptor activation promotes immune suppression in triple-negative-breast cancer. DOI
Zizza P, et al. TRF2 positively regulates SULF2 expression increasing VEGF-A release and activity in tumor microenvironment. Nucleic Acids Res. 2019;47:3365–3382. PubMed PMC
Biroccio A, et al. TRF2 inhibits a cell-extrinsic pathway through which natural killer cells eliminate cancer cells. Nat Cell Biol. 2013;15:818–828. PubMed
Cherfils-Vicini J, et al. Cancer cells induce immune escape via glycocalyx changes controlled by the telomeric protein TRF2. EMBO J. 2019;38:e100012. PubMed PMC
Kaur P, et al. Enhanced electrostatic force microscopy reveals higher-order DNA looping mediated by the telomeric protein TRF2. Sci Rep. 2016;6:20513. PubMed PMC
Wood AM, et al. TRF2 and lamin A/C interact to facilitate the functional organization of chromosome ends. Nat Commun. 2014;5:5467. PubMed PMC
Smith ED, et al. Interstitial telomeric loops and implications of the interaction between TRF2 and lamin A/C. Differentiation. 2018;102:19–26. PubMed
Saha A, et al. Role of telomeric TRF2 in orosphere formation and CSC phenotype maintenance through efficient DNA repair pathway and its correlation with recurrence in OSCC. Stem Cell Rev Rep. 2018;14:871–887. PubMed
Zhang P, et al. Nontelomeric splice variant of telomere repeat-binding factor 2 maintains neuronal traits by sequestering repressor element 1-silencing transcription factor. Proc Natl Acad Sci U S A. 2011;108:16434–16439. PubMed PMC
Ovando-Roche P, et al. TRF2-mediated stabilization of hREST4 is critical for the differentiation and maintenance of neural progenitors. Stem Cells. 2014;32:2111–2122. PubMed
Schneider RP, et al. TRF1 is a stem cell marker and is essential for the generation of induced pluripotent stem cells. Nat Commun. 2013;4:1946. PubMed
Marión RM, et al. Common telomere changes during in vivo reprogramming and early stages of tumorigenesis Stem. Cell Rep. 2017;8:460. PubMed PMC
Vinayagamurthy S, et al. Extra-telomeric impact of telomeres: emerging molecular connections in pluripotency or stemness. J Biol Chem. 2020;295:10245–10254. PubMed PMC
Ohishi T, et al. TRF1 ensures the centromeric function of Aurora-B and proper chromosome segregation. Mol Cell Biol. 2014;34:2464. PubMed PMC
Lee J, Gollahon L. Mitotic perturbations induced by Nek2 overexpression require interaction with TRF1 in breast cancer cells. Cell Cycle. 2013;12:3599. PubMed PMC
Yi X, et al. Quantitation of telomerase components and hTERT mRNA splicing patterns in immortal human cells. Nucleic Acids Res. 2001;29:4818–4825. PubMed PMC
Akincilar SC, et al. Quantitative assessment of telomerase components in cancer cell lines. FEBS Lett. 2015;589:974–984. PubMed
Park J-I, et al. Telomerase modulates Wnt signalling by association with target gene chromatin. Nature. 2009;460:66–72. PubMed PMC
Ghosh A, et al. Telomerase directly regulates NF-kB-dependent transcription. Nat Cell Biol. 2012;14:1270–1281. PubMed
Khattar E, et al. Telomerase reverse transcriptase promotes cancer cell proliferation by augmenting tRNA expression. J Clin Invest. 2016;126:4045–4060. PubMed PMC
Ozturk MB, et al. Current insights to regulation and role of telomerase in human diseases. Antioxidants (Basel) 2017;6:17. PubMed PMC
Chu HP, et al. TERRA RNA antagonizes ATRX and protects telomeres. Cell. 2017;170:86–101.:e16. PubMed PMC
Hirashima K, Seimiya H. Telomeric repeatcontaining RNA/G-quadruplex-forming sequences cause genome-wide alteration of gene expression in human cancer cells in vivo. Nucleic Acids Res. 2015;43:2022–2032. PubMed PMC
Marión RM, et al. TERRA regulate the transcriptional landscape of pluripotent cells through TRF1-dependent recruitment of PRC2. Elife. 2019;8:e44656. PubMed PMC
Deng Z, et al. Formation of telomeric repeat-containing RNA (TERRA) foci in highly proliferating mouse cerebellar neuronal progenitors and medulloblastoma. J Cell Sci. 2012;125:4383–4394. PubMed PMC
Akincilar SC, et al. Non-canonical roles of canonical telomere binding proteins in cancers. Cell Mol Life Sci. 2021;78:4235–4257. PubMed PMC
Chen L-Y, et al. Mitochondrial localization of telomeric protein TIN2 links telomere regulation to metabolic control. Mol Cell. 2012;47:839–850. PubMed PMC
Lee JH, et al. Loss of RNA-binding protein HuR facilitates cellular senescence through posttranscriptional regulation of TIN2 mRNA. Nucleic Acids Res. 2018;46:4271. PubMed PMC
Platt JM, et al. Rap1 relocalization contributes to the chromatin-mediated gene expression profile and pace of cell senescence. Genes Dev. 2013;27:1406–1420. PubMed PMC
Song S, et al. Rap1-mediated nucleosome displacement can regulate gene expression in senescent cells without impacting the pace of senescence. Aging Cell. 2020;19:e13061. PubMed PMC
Wagner KD, et al. The differential spatiotemporal expression pattern of shelterin genes throughout lifespan. Aging (Albany NY) 2017;9:1219–1232. PubMed PMC
Ying Y, et al. The non-telomeric evolutionary trajectory of TRF2 in zebrafish reveals its specific roles in neurodevelopment and aging. Nucleic Acids Res. 2022;50:2081–2095. PubMed PMC
Gottschling DE, et al. Position effect a S cerevisiae telomeres: reversible repression of Pol II transcription. Cell. 1990;63:751–762. PubMed
Ottaviani A, et al. Telomeric position effect: from the yeast paradigm to human pathologies. Biochimie. 2008;90:93–107. PubMed
Baur JA, et al. Telomere position effect in human cells. Science. 2001;292:2075–2077. PubMed
Robin JD, et al. Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances. Genes Dev. 2014;28:2464–2476. PubMed PMC
Kim W, et al. Regulation of the human telomerase gene TERT by telomere position effect-over long distances (TPE-OLD): implications for aging and cancer. PLoS Biol. 2016;14:e2000016. PubMed PMC
Mukherjee AK, et al. Telomere length-dependent transcription and epigenetic modifications in promoters remote from telomere ends. PLoS Genet. 2018;14:e1007782. PubMed PMC
Crabbe L, Karlseder J. Mammalian Rap1 widens its impact. Nat Cell Biol. 2010;12:733–735. PubMed
Luu KN, et al. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J Am Chem Soc. 2006;128:9963–9970. PubMed PMC
Phan AT, et al. Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution. Nucleic Acids Res. 2007;35:6517–6525. PubMed PMC
Tran PLT, et al. Stability of telomeric G-quadruplexes. Nucleic Acids Res. 2011;39:3282–3294. PubMed PMC
Kar A, et al. Long repeating (TTAGGG)n single-stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation. J Biol Chem. 2018;293:9473–9485. PubMed PMC
Randall A, Griffith JD. Structure of long telomeric RNA transcripts: the G-rich RNA forms a compact repeating structure containing G-quartets. J Biol Chem. 2009;284:13980. PubMed PMC
Biffi G, et al. Quantitative visualization of DNA G-quadruplex structures in human cells. Nat Chem. 2013;5:182–186. PubMed PMC
Henderson A, et al. Detection of G-quadruplex DNA in mammalian cells. Nucleic Acids Res. 2014;42:860–869. PubMed PMC
Bryan TM. G-quadruplexes at telomeres: friend or foe. Molecules. 2020;25:3686. PubMed PMC
Seimiya H, et al. Chemical targeting of G-quadruplexes in telomeres and beyond for molecular cancer therapeutics. J Antibiot. 2021;74:617–628. PubMed
Pedroso IM, et al. The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures. Nucleic Acids Res. 2009;37:1541–1554. PubMed PMC
Biffi G, et al. An intramolecularG-quadruplex structure is required for binding of telomeric repeat-containing RNA to the telomeric protein TRF2. J Am Chem Soc. 2012;134:11974–11976. PubMed PMC
Paeschke K, et al. Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo. Nat Struct Mol Biol. 2005;12:847–854. PubMed
Hwang H, et al. POT1-TPP1 regulates telomeric overhang structural dynamics. Structure. 2012;20:1872–1880. PubMed PMC
Safa L, et al. Binding polarity of RPA to telomeric sequences and influence of G-quadruplex stability. Biochimie. 2014;103:80–88. PubMed
Hudson JS, et al. Recognition and binding of human telomeric G-quadruplex DNA by unfolding protein 1. Biochemistry. 2014;53:3347–3356. PubMed PMC
Hahn WC, et al. Inhibition of telomerase limits the growth of human cancer cells. Nat Med. 1999;5:1164–1170. PubMed
Sun D, et al. Inhibition of human telomerase by a G-quadruplex-interactive compound. J Med Chem. 1997;40:2113–2116. PubMed
Saraswati AP, et al. Raising the bar in anticancer therapy: recent advances in, and perspectives on, telomerase inhibitors. Drug Discov Today. 2019;24:1370–1388. PubMed
Wang YH, et al. G4LDB 2.2: a database for discovering and studying G-quadruplex and i-Motif ligands. Nucleic Acids Res. 2022;50:D150–D160. PubMed PMC
Zuffo M, et al. More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand. Nucleic Acids Res. 2018;46:e115. PubMed PMC
Mergny JL, et al. Are telomeres and telomerase still relevant targets in oncology? Bull Cancer. 2021;108:30–38. in French. PubMed
Moye AL, et al. Telomeric G-quadruplexes are a substrate and site of localization for human telomerase. Nat Commun. 2015;6:7643. PubMed PMC
De Cian A, et al. Reevaluation of telomerase inhibition by quadruplex ligands and their mechanisms of action. Proc Natl Acad Sci U S A. 2007;104:17347. PubMed PMC
Granotier C, et al. Preferential binding of a G-quadruplex ligand to human chromosome ends. Nucleic Acids Res. 2005;33:4182–4190. PubMed PMC
Phan AT. Human telomeric G-quadruplex: structures of DNA and RNA sequences. FEBS J. 2010;277:1107–1117. PubMed
Amato R, et al. G-quadruplex stabilization fuels the ALT pathway in ALT-positive osteosarcoma cells. Genes (Basel) 2020;11:304. PubMed PMC
Shimizu A, Honjo T. Immunoglobulin class switching. Cell. 1984;36:801–803. PubMed
Simonsson T, et al. DNA tetraplex formation in the control region of c-myc. Nucleic Acids Res. 1998;26:1167–1172. PubMed PMC
Yadav VK, et al. QuadBase: genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. Nucleic Acids Res. 2008;36:D381–D385. PubMed PMC
Dhapola P, Chowdhury S. QuadBase2: web server for multiplexed guanine quadruplex mining and visualization. Nucleic Acids Res. 2016;44:W277–W283. PubMed PMC
Verma A, et al. Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells. Nucleic Acids Res. 2009;37:4194–4204. PubMed PMC
Thakur RK, et al. Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression. Nucleic Acids Res. 2009;37:172–183. PubMed PMC
González V, et al. Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein. J Biol Chem. 2009;284:23622–23635. PubMed PMC
Fekete A, et al. The guanine-quadruplex structure in the human c-myc gene’s promoter is converted into B-DNA form by the human poly(ADP-ribose)polymerase-1. PLoS One. 2012;7:e42690. PubMed PMC
Chen S, et al. Mechanistic studies for the role of cellular nucleic-acid-binding protein (CNBP) in regulation of c-myc transcription. Biochim Biophys Acta. 2013;1830:4769–4777. PubMed
Saha D, et al. Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion. J Biol Chem. 2017;292:15205–15215. PubMed PMC
Soldatenkov VA, et al. Transcriptional repression by binding of poly(ADP-ribose) polymerase to promoter sequences. J Biol Chem. 2002;277:665–670. PubMed
Cogoi S, et al. The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element. J Biol Chem. 2010;285:22003–22016. PubMed PMC
Sengar A, et al. Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter. Nucleic Acids Res. 2019;47:1564–1572. PubMed PMC
Cogoi S, et al. MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice. Nucleic Acids Res. 2013;41:4049–4064. PubMed PMC
Raiber E-A, et al. A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro. Nucleic Acids Res. 2012;40:1499–1508. PubMed PMC
Todd AK, Neidle S. The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements. Nucleic Acids Res. 2008;36:2700–2704. PubMed PMC
Kumar P, et al. Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide. Nucleic Acids Res. 2011;39:8005–8016. PubMed PMC
Brázda V, et al. The amino acid composition of quadruplex binding proteins reveals a shared motif and predicts new potential quadruplex interactors. Molecules. 2018;23:2341. PubMed PMC
Huang ZL, et al. Identification of G-quadruplex-binding protein from the exploration of RGG motif/G-quadruplex interactions. J Am Chem Soc. 2018;140:17945–17955. PubMed
Mohaghegh P, et al. The Bloom’s and Werner’s syndrome proteins are DNA structure-specifiic helicases. Nucleic Acids Res. 2001;29:2843–2849. PubMed PMC
Wu Y, et al. FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability. Mol Cell Biol. 2008;28:4116–4128. PubMed PMC
Creacy SD, et al. G4 resolvase 1 binds both DNA and RNA tetramolecular quadruplex with high affinity and is the major source of tetramolecular quadruplex G4-DNA and G4-RNA resolving activity in HeLa cell lysates. J Biol Chem. 2008;283:34626–34634. PubMed PMC
Huber MD, et al. G4 DNA unwinding by BLM and Sgs1p: substrate specificity and substrate-specific inhibition. Nucleic Acids Res. 2002;30:3954–3961. PubMed PMC
Byrd AK, et al. Pif1 helicase unfolding of G-quadruplex DNA is highly dependent on sequence and reaction conditions. J Biol Chem. 2018;293:17792–17802. PubMed PMC
Huppert JL, et al. G-quadruplexes: the beginning and end of UTRs. Nucleic Acids Res. 2008;36:6260–6268. PubMed PMC
Didiot MC, et al. The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer. Nucleic Acids Res. 2008;36:4902–4912. PubMed PMC
Fouché N, et al. The basic domain of TRF2 directs binding to DNA junctions irrespective of the presence of TTAGGG repeats. J Biol Chem. 2006;281:37486–37495. PubMed
Karlseder J, et al. p53-and ATM-dependent apoptosis induced by telomeres lacking TRF2. Science. 1999;283:1321–1325. PubMed
Ruis P, et al. TRF2-independent chromosome end protection during pluripotency. Nature. 2021;589:103–109. PubMed PMC
Markiewicz-Potoczny M, et al. TRF2-mediated telomere protection is dispensable in pluripotent stem cells. Nature. 2021;589:110–115. PubMed PMC
Liu T, et al. Cancer-specific telomerase reverse transcriptase (TERT) promoter mutations: biological and clinical implications. Genes. 2016;7:38. PubMed PMC
Horn S, et al. TERT promoter mutations in familial and sporadic melanoma. Science. 2013;339:959–961. PubMed
Killela PJ, et al. TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal. Proc Natl Acad Sci U S A. 2013;110:6021–6026. PubMed PMC
Sharma S, Chowdhury S. Emerging mechanisms oftelomerase reactivation in cancer. Trends Cancer. 2022;8:632–641. PubMed PMC
Akincilar SC, et al. Long-range chromatin interactions drive mutant TERT promoter activation. Cancer Discov. 2016;6:1276–1292. PubMed
Can Akincilar S, et al. Identification of mechanism of cancer-cell-specific reactivation of hTERT offers therapeutic opportunities for blocking telomerase specifically in human colorectal cancer. Nucleic Acids Res. 2022 doi: 10.1093/NAR/GKAC479. Published online June 14, 2022. PubMed DOI PMC
Mitchell TRH, Zhu XD. Methylated TRF2 associates with the nuclear matrix and serves as a potential biomarker for cellular senescence. Aging (Albany NY) 2014;6:248. PubMed PMC
Okamoto K, Seimiya H. From the wings to the center stage of chromosomes. J Biol Chem. 2019;294:17723–17724. PubMed PMC
Nurk S, et al. The complete sequence of a human genome. Science. 2022;376:44–53. PubMed PMC
Bohálová N, et al. Novel G-quadruplex prone sequences emerge in the complete assembly of the human X chromosome. Biochimie. 2021;191:87–90. PubMed
Sarkies P, et al. Epigenetic instability due to defective replication of structured DNA. Mol Cell. 2010;40:703–713. PubMed PMC
Lacroix L, et al. Identification of two human nuclear proteins that recognise the cytosine-rich strand of human telomeres in vitro. NucleicAcids Res. 2000;28:1564–1575. PubMed PMC
Kang HJ, et al. The transcriptional complex between the BCL2 i-motif and hnRNP LL is a molecular switch for control of gene expression that can be modulated by small molecules. J Am Chem Soc. 2014;136:4172–4185. PubMed PMC
Schaffitzel C, et al. In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei. Proc Natl Acad Sci U S A. 2001;98:8572–8577. PubMed PMC
Schaffitzel C, et al. Probing telomeric G-quadruplex DNA structures in cells with in vitro generated single-chain antibody fragments. Methods Mol Biol. 2010;608:159–181. PubMed
Sengupta A, et al. Promise of G-quadruplex structure binding ligands as epigenetic modifiers with anti-cancer effects. Molecules. 2019;24:582. PubMed PMC
Mishra SK, et al. G4IPDB: a database for G-quadruplex structure forming nucleic acid interacting proteins. Sci Rep. 2016;6:38144. PubMed PMC
Hänsel-Hertsch R, et al. Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing. Nat Protoc. 2018;13:551–564. PubMed