Co-infection of mammarenaviruses in a wild mouse, Tanzania
Status PubMed-not-MEDLINE Jazyk angličtina Země Anglie, Velká Británie Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
36533140
PubMed Central
PMC9752776
DOI
10.1093/ve/veac065
PII: veac065
Knihovny.cz E-zdroje
- Klíčová slova
- Lemniscomys rosalia, Mafiga mammarenavirus, co-infection, recombination; BlobTools, zoonotic infections,
- Publikační typ
- časopisecké články MeSH
Mammarenaviruses are bi-segmented RNA viruses. They encompass viruses responsible for several severe diseases in humans. While performing a de novo assembly of a new virus found in a wild single-striped grass mouse in Tanzania, we found a single S but two divergent L segments. Natural co-infections, common within reptarenaviruses in captivity, were never reported for mammarenaviruses and never in a wild sample. This finding can have implications for virus evolution as co-infection could trigger viral recombination/reassortment in natural reservoirs.
Institute of Vertebrate Biology of the Czech Academy of Sciences Kvetna 8 603 65 Brno Czech Republic
Zobrazit více v PubMed
Alfaro-Alarcón A. et al. (2022) ‘Boid Inclusion Body Disease (BIBD) Is also a Disease of Wild Boa Constrictors’, BioRxiv [Preprint] <10.1101/2022.04.25.489483> accessed 1 Jun 2022. PubMed DOI PMC
Andersen K. G., et al. (2015) ‘Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus’, Cell, 162: 738–50. PubMed PMC
Bao Y., Chetvernin V., and Tatusova T. (2014) ‘Improvements to Pairwise Sequence Comparison (PASC): A Genome-Based Web Tool for Virus Classification’, Archives of Virology, 159: 3293–304. PubMed PMC
Buchfink B., Xie C., and Huson D. H. (2015) ‘Fast and Sensitive Protein Alignment Using DIAMOND’, Nature Methods, 12: 59–60. PubMed
Cuypers L. N. et al. (2020) ‘Three Arenaviruses in Three Subspecific Natal Multimammate Mouse Taxa in Tanzania: Same Host Specificity, But Different Spatial Genetic Structure?’, Virus Evolution, 6: veaa039. PubMed PMC
Fernandes J. et al. (2018) ‘Xapuri Virus, a Novel Mammarenavirus: Natural Reassortment and Increased Diversity between New World Viruses’, Emerging Microbes & Infections, 7: 120. PubMed PMC
Goüy de Bellocq J. et al. (2010) ‘Sympatric Occurrence of 3 Arenaviruses, Tanzania’, Emerging Infectious Diseases, 16: 692–5. PubMed PMC
Hepojoki J. et al. (2015) ‘Arenavirus Coinfections Are Common in Snakes with Boid Inclusion Body Disease’, Journal of Virology, 89: 8657–60. PubMed PMC
Jiang H. et al. (2014) ‘Skewer: A Fast and Accurate Adapter Trimmer for Next-generation Sequencing Paired-End Reads’, BMC Bioinformatics, 15: 182. PubMed PMC
Laetsch D., and Blaxter M. (2017) ‘BlobTools: Interrogation of Genome Assemblies’, F1000Research, 6: 1287.
Lukashevich I. S. (1992) ‘Generation of Reassortants between African Arenaviruses’, Virology, 188: 600–5. PubMed
Miller M. A., Pfeiffer W., and Swartz T. (2010) ‘Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees’, in Proceedings of the Gateway Computing Environments Workshop (GCE), Nov14; New Orleans, LA, pp. 1–8.
Nurk S. et al. (2017) ‘metaSPAdes: A New Versatile Metagenomic Assembler’, Genome Research, 27: 824–34. PubMed PMC
Radoshitzky S. R. et al. (2019) ‘ICTV Virus Taxonomy Profile: Arenaviridae’, The Journal of General Virology, 100: 1200–1. PubMed
Ronquist F. et al. (2012) ‘MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space’, Systematic Biology, 61: 539–42. PubMed PMC
Stenglein M. D. et al. (2015) ‘Widespread Recombination, Reassortment, and Transmission of Unbalanced Compound Viral Genotypes in Natural Arenavirus Infections’, PLoS Pathogens, 11: e1004900. PubMed PMC
Těšíková J., Krásová J., and Goüy de Bellocq J. (2021) ‘Multiple Mammarenaviruses Circulating in Angolan Rodents’, Viruses, 13: 982. PubMed PMC
Vijaykrishna D., Mukerji R., and Smith G. J. D. (2015) ‘RNA Virus Reassortment: An Evolutionary Mechanism for Host Jumps and Immune Evasion’, PLoS Pathogens, 11: e1004902. PubMed PMC