Optimal estimated standard uncertainties of reflection intensities for kinematical refinement from 3D electron diffraction data
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
21-05926X
Grantová Agentura České Republiky
956099
H2020 Marie Skłodowska-Curie Actions
LM2023051
Ministerstvo Školství, Mládeže a Tělovýchovy
PubMed
37578439
PubMed Central
PMC10483590
DOI
10.1107/s2053273323005053
PII: S2053273323005053
Knihovny.cz E-zdroje
- Klíčová slova
- data reduction, electron diffraction, error analysis, error modelling,
- Publikační typ
- časopisecké články MeSH
Estimating the error in the merged reflection intensities requires a full understanding of all the possible sources of error arising from the measurements. Most diffraction-spot integration methods focus mainly on errors arising from counting statistics for the estimation of uncertainties associated with the reflection intensities. This treatment may be incomplete and partly inadequate. In an attempt to fully understand and identify all the contributions to these errors, three methods are examined for the correction of estimated errors of reflection intensities in electron diffraction data. For a direct comparison, the three methods are applied to a set of organic and inorganic test cases. It is demonstrated that applying the corrections of a specific model that include terms dependent on the original uncertainty and the largest intensity of the symmetry-related reflections improves the overall structure quality of the given data set and improves the final Rall factor. This error model is implemented in the data reduction software PETS2.
Zobrazit více v PubMed
Abrahams, S. C. & Keve, E. T. (1971).
Blessing, R. H. (1997).
Brewster, A. S., Bhowmick, A., Bolotovsky, R., Mendez, D., Zwart, P. H. & Sauter, N. K. (2019). PubMed PMC
Bruhn, J. F., Scapin, G., Cheng, A., Mercado, B. Q., Waterman, D. G., Ganesh, T., Dallakyan, S., Read, B. N., Nieusma, T., Lucier, K. W., Mayer, M. L., Chiang, N. J., Poweleit, N., McGilvray, P. T., Wilson, T. S., Mashore, M., Hennessy, C., Thomson, S., Wang, B., Potter, C. S. & Carragher, B. (2021). PubMed PMC
Capitelli, F. & Derebe, M. (2007).
Diamond, R. (1969). PubMed
Evans, P. (2006). PubMed
Evans, P. R. (2011). PubMed PMC
Howell, P. L. & Smith, G. D. (1992).
King, M. D., Buchanan, W. D. & Korter, T. M. (2011). PubMed
Kolb, U., Gorelik, T., Kübel, C., Otten, M. T. & Hubert, D. (2007). PubMed
Leslie, A. G. W. (1999). PubMed
Mugnaioli, E., Gorelik, T. & Kolb, U. (2009). PubMed
Nannenga, B. L., Shi, D., Leslie, A. G. & Gonen, T. (2014). PubMed PMC
Nederlof, I., van Genderen, E., Li, Y.-W. & Abrahams, J. P. (2013). PubMed PMC
Palatinus, L., Brázda, P., Jelínek, M., Hrdá, J., Steciuk, G. & Klementová, M. (2019). PubMed
Palatinus, L. & Chapuis, G. (2007).
Palatinus, L., Corrêa, C. A., Steciuk, G., Jacob, D., Roussel, P., Boullay, P., Klementová, M., Gemmi, M., Kopeček, J., Domeneghetti, M. C., Cámara, F. & Petříček, V. (2015). PubMed
Palatinus, L., Petříček, V. & Corrêa, C. A. (2015). PubMed
Parsons, S., Flack, H. D. & Wagner, T. (2013). PubMed PMC
Petříček, V., Palatinus, L., Plášil, J. & Duşek, M. (2023).
Rossmann, M. G., Leslie, A. G. W., Abdel-Meguid, S. S. & Tsukihara, T. (1979).
Schwarzenbach, D., Abrahams, S. C., Flack, H. D., Gonschorek, W., Hahn, Th., Huml, K., Marsh, R. E., Prince, E., Robertson, B. E., Rollett, J. S. & Wilson, A. J. C. (1989).
Tukey, J. W. (1977).
Wang, Y., Takki, S., Cheung, O., Xu, H., Wan, W., Öhrström, L. & Inge, A. K. (2017). PubMed
Waterman, D. & Evans, G. (2010). PubMed PMC
Zhang, D., Oleynikov, P., Hovmöller, S. & Zou, X. (2010).