SLCO5A1 and synaptic assembly genes contribute to impulsivity in juvenile myoclonic epilepsy
Status PubMed-not-MEDLINE Jazyk angličtina Země Anglie, Velká Británie Médium electronic
Typ dokumentu časopisecké články
Grantová podpora
MR/K013998/1
Medical Research Council - United Kingdom
MR/N026063/1
Medical Research Council - United Kingdom
MR/W006251/1
Medical Research Council - United Kingdom
NC/V001051/1
National Centre for the Replacement, Refinement and Reduction of Animals in Research - United Kingdom
PubMed
37770509
PubMed Central
PMC10539321
DOI
10.1038/s41525-023-00370-z
PII: 10.1038/s41525-023-00370-z
Knihovny.cz E-zdroje
- Publikační typ
- časopisecké články MeSH
Elevated impulsivity is a key component of attention-deficit hyperactivity disorder (ADHD), bipolar disorder and juvenile myoclonic epilepsy (JME). We performed a genome-wide association, colocalization, polygenic risk score, and pathway analysis of impulsivity in JME (n = 381). Results were followed up with functional characterisation using a drosophila model. We identified genome-wide associated SNPs at 8q13.3 (P = 7.5 × 10-9) and 10p11.21 (P = 3.6 × 10-8). The 8q13.3 locus colocalizes with SLCO5A1 expression quantitative trait loci in cerebral cortex (P = 9.5 × 10-3). SLCO5A1 codes for an organic anion transporter and upregulates synapse assembly/organisation genes. Pathway analysis demonstrates 12.7-fold enrichment for presynaptic membrane assembly genes (P = 0.0005) and 14.3-fold enrichment for presynaptic organisation genes (P = 0.0005) including NLGN1 and PTPRD. RNAi knockdown of Oatp30B, the Drosophila polypeptide with the highest homology to SLCO5A1, causes over-reactive startling behaviour (P = 8.7 × 10-3) and increased seizure-like events (P = 6.8 × 10-7). Polygenic risk score for ADHD genetically correlates with impulsivity scores in JME (P = 1.60 × 10-3). SLCO5A1 loss-of-function represents an impulsivity and seizure mechanism. Synaptic assembly genes may inform the aetiology of impulsivity in health and disease.
Adult Epilepsy Genetics Program Krembil Research Institute University of Toronto Toronto Canada
Danish Epilepsy Centre Dianalund Denmark
Department of Neurology Drammen Hospital Vestre Viken Health Trust Oslo Norway
Department of Psychological Medicine and Clinical Neuroscience Cardiff University Cardiff UK
Department of Regional Health Research University of Southern Denmark Odense Denmark
Departments of Statistical Sciences and Computer Science The University of Toronto Toronto Canada
Genetics and Genome Biology Program The Hospital for Sick Children Toronto Canada
Institute of Biological Sciences Faculty of Science University of Malaya Kuala Lumpur Malaysia
IRCCS Istituto 'G Gaslini' Genova Italy
King's College Hospital London UK
MRC Centre for Neurodevelopmental Disorders King's College London London UK
National Centre for Epilepsy Oslo University Hospital Oslo Norway
Nationwide Children's Hospital Columbus OH USA
Newcastle upon Tyne NHS Foundation Trust Newcastle UK
Odense University Hospital Odense Denmark
Pediatric Neurology Azienda Ospedaliero Universitaria Pisana Pisa University Hospital Pisa Italy
Tallin Children's Hospital Tallin Estonia
The Centre for Applied Genomics The Hospital for Sick Children Toronto Canada
The Welsh Epilepsy Unit Department of Neurology Cardiff and Vale University Health Board Cardiff UK
Zobrazit více v PubMed
Daruna, J. H. & Barnes, P. A. In: The impulsive client: theory, research and treatment (eds W. G. McCown, J. L. Johnson, & M. B. Shure) 23–37 (American Psychological Association, 1993).
Niv S, Tuvblad C, Raine A, Wang P, Baker LA. Heritability and longitudinal stability of impulsivity in adolescence. Behav. Genet. 2012;42:378–392. PubMed PMC
Dalley JW, Robbins TW. Fractionating impulsivity: neuropsychiatric implications. Nat. Rev. Neurosci. 2017;18:158–171. PubMed
Ramirez-Martin A, Ramos-Martin J, Mayoral-Cleries F, Moreno-Kustner B, Guzman-Parra J. Impulsivity, decision-making and risk-taking behaviour in bipolar disorder: a systematic review and meta-analysis. Psychol. Med. 2020;50:2141–2153. PubMed
Smith A, Syvertsen M, Pal DK. Meta-analysis of response inhibition in juvenile myoclonic epilepsy. Epilepsy Behav. 2020;106:107038. PubMed
Shakeshaft, A. et al. Trait impulsivity in juvenile myoclonic epilepsy. Ann Clin Transl Neurol, 10.1002/acn3.51255 (2020). PubMed PMC
Wandschneider B, et al. Risk-taking behavior in juvenile myoclonic epilepsy. Epilepsia. 2013;54:2158–2165. PubMed PMC
Malloy-Diniz L, Fuentes D, Leite WB, Correa H, Bechara A. Impulsive behavior in adults with attention deficit/ hyperactivity disorder: characterization of attentional, motor and cognitive impulsiveness. J. Int. Neuropsychol. Soc. 2007;13:693–698. PubMed
Sanchez-Roige S, et al. Genome-wide association studies of impulsive personality traits (BIS-11 and UPPS-P) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes. J. Neurosci. 2019;39:2562–2572. PubMed PMC
Barbeira AN, et al. Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics. Nat. Commun. 2018;9:1825. PubMed PMC
Schizophrenia Working Group of the Psychiatric Genomics, C. Biological insights from 108 schizophrenia-associated genetic loci. Nature. 2014;511:421–427. PubMed PMC
GTEx Consortium. The genotype-tissue expression (GTEx) project. Nat. Genet. 2013;45:580–585. PubMed PMC
O’Muircheartaigh J, et al. Focal structural changes and cognitive dysfunction in juvenile myoclonic epilepsy. Neurology. 2011;76:34–40. PubMed PMC
Keller SS, et al. Microstructural and volumetric abnormalities of the putamen in juvenile myoclonic epilepsy. Epilepsia. 2011;52:1715–1724. PubMed
Landvogt C, Buchholz H-G, Bernedo V, Schreckenberger M, Werhahn KJ. Alteration of dopamine D2/D3 receptor binding in patients with juvenile myoclonic epilepsy: alteration of dopamine D2/D3 receptor binding in JME. Epilepsia. 2010;51:1699–1706. PubMed
Ciumas C, et al. Reduced dopamine transporter binding in patients with juvenile myoclonic epilepsy. Neurology. 2008;71:788–794. PubMed
Dalley JW, Everitt BJ, Robbins TW. Impulsivity, compulsivity, and top-down cognitive control. Neuron. 2011;69:680–694. PubMed
Dalley JW, Roiser JP. Dopamine, serotonin and impulsivity. Neuroscience. 2012;215:42–58. PubMed
Deransart C, Vercueil L, Marescaux C, Depaulis A. The role of basal ganglia in the control of generalized absence seizures. Epilepsy Res. 1998;32:213–223. PubMed
Cho SS, et al. Morphometric correlation of impulsivity in medial prefrontal cortex. Brain Topogr. 2013;26:479–487. PubMed PMC
Santos BPD, et al. Genetic susceptibility in juvenile myoclonic epilepsy: systematic review of genetic association studies. PLoS One. 2017;12:e0179629. PubMed PMC
International League Against Epilepsy Consortium on Complex Epilepsies. Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies. Nat. Commun. 2018;9:5269. PubMed PMC
Bai D, et al. DNA variants in coding region of EFHC1: SNPs do not associate with juvenile myoclonic epilepsy. Epilepsia. 2008;50:1184–1190. PubMed PMC
Bailey JN, et al. Variant intestinal-cell kinase in juvenile myoclonic epilepsy. N. Engl. J. Med. 2018;378:1018–1028. PubMed
Shakeshaft A, et al. Sex-specific disease modifiers in juvenile myoclonic epilepsy. Sci. Rep. 2022;12:2785. PubMed PMC
Li M, et al. Antisense oligonucleotide therapy reduces seizures and extends life span in an SCN2A gain-of-function epilepsy model. J. Clin. Invest. 2021;131:e152079. PubMed PMC
Karalis V, Bateup HS. Current approaches and future directions for the treatment of mTORopathies. Dev. Neurosci. 2021;43:143–158. PubMed PMC
Hall M-H, Smoller JW. A new role for endophenotypes in the GWAS era: functional characterization of risk variants. Harv. Rev. Psychiatry. 2010;18:67–74. PubMed PMC
Manchia M, et al. The impact of phenotypic and genetic heterogeneity on results of genome wide association studies of complex diseases. PLoS One. 2013;8:e76295. PubMed PMC
Steinberg L, Sharp C, Stanford MS, Tharp AT. New tricks for an old measure: the development of the Barratt Impulsiveness Scale-Brief (BIS-Brief) Psychol. Assess. 2013;25:216–226. PubMed
Watanabe K, et al. A global overview of pleiotropy and genetic architecture in complex traits. Nat. Genet. 2019;51:1339–1348. PubMed
Neale’s Lab UK Biobank GWAS Results Round 2 (Imputed v3 - File Manifest Release 20180731), http://www.nealelab.is/uk-biobank.
Kinirons P, et al. A novel locus for idiopathic generalized epilepsy in French-Canadian families maps to 10p11. Am. J. Med. Genet. A. 2008;146A:578–584. PubMed
Wang, D. et al. Comprehensive functional genomic resource and integrative model for the human brain. Science362, 10.1126/science.aat8464 (2018). PubMed PMC
O’Brien HE, et al. Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders. Genome Biol. 2018;19:194. PubMed PMC
Wang F, Panjwani N, Wang C, Sun L, Strug LJ. A flexible summary statistics-based colocalization method with application to the mucin cystic fibrosis lung disease modifier locus. Am. J. Hum. Genet. 2022;109:253–269. PubMed PMC
BrainSpan Atlas of the Developing Human Brain [Internet], http://brainspan.org.
Sunkin SM, et al. Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system. Nucleic Acids Res. 2013;41:D996–D1008. PubMed PMC
Sebastian K, et al. Characterization of SLCO5A1/OATP5A1, a solute carrier transport protein with non-classical function. PLoS One. 2013;8:e83257. PubMed PMC
Faville R, Kottler B, Goodhill GJ, Shaw PJ, van Swinderen B. How deeply does your mutant sleep? Probing arousal to better understand sleep defects in Drosophila. Sci. Rep. 2015;5:8454. PubMed PMC
Mazaud D, et al. Transcriptional regulation of the glutamate/GABA/glutamine cycle in adult glia controls motor activity and seizures in drosophila. J. Neurosci. 2019;39:5269–5283. PubMed PMC
Falcon S, Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics. 2007;23:257–258. PubMed
Liberzon A, et al. The Molecular Signatures Database (MSigDB) hallmark gene set collection. Cell Syst. 2015;1:417–425. PubMed PMC
Meissner A, et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature. 2008;454:766–770. PubMed PMC
Mikkelsen TS, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 2007;448:553–560. PubMed PMC
Demontis D, et al. Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. Nat. Genet. 2019;51:63–75. PubMed PMC
Lawlor DA, Tilling K, Davey Smith G. Triangulation in aetiological epidemiology. Int. J. Epidemiol. 2016;45:1866–1886. PubMed PMC
Parker L, Howlett IC, Rusan ZM, Tanouye MA. Seizure and epilepsy: studies of seizure disorders in Drosophila. Int. Rev. Neurobiol. 2011;99:1–21. PubMed PMC
Uhl GR, Martinez MJ. PTPRD: neurobiology, genetics, and initial pharmacology of a pleiotropic contributor to brain phenotypes. Ann. N Y Acad. Sci. 2019;1451:112–129. PubMed PMC
Hu Z, Xiao X, Zhang Z, Li M. Genetic insights and neurobiological implications from NRXN1 in neuropsychiatric disorders. Mol. Psychiatry. 2019;24:1400–1414. PubMed
Sanes JR, Zipursky SL. Synaptic specificity, recognition molecules, and assembly of neural circuits. Cell. 2020;181:536–556. PubMed
Miyamoto H, et al. Impaired cortico-striatal excitatory transmission triggers epilepsy. Nat. Commun. 2019;10:1917. PubMed PMC
Purcell S, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 2007;81:559–575. PubMed PMC
Manichaikul A, et al. Robust relationship inference in genome-wide association studies. Bioinformatics. 2010;26:2867–2873. PubMed PMC
Wigginton JE, Abecasis GR. PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data. Bioinformatics. 2005;21:3445–3447. PubMed
Conomos MP, Miller MB, Thornton TA. Robust inference of population structure for ancestry prediction and correction of stratification in the presence of relatedness. Genet. Epidemiol. 2015;39:276–293. PubMed PMC
Das S, et al. Next-generation genotype imputation service and methods. Nat. Genet. 2016;48:1284–1287. PubMed PMC
Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatics. 2015;31:782–784. PubMed PMC
Taliun D, et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature. 2021;590:290–299. PubMed PMC
Genomes Project Consortium, et al. A global reference for human genetic variation. Nature. 2015;526:68–74. PubMed PMC
Chen B, Craiu RV, Strug LJ, Sun L. The X factor: a robust and powerful approach to X-chromosome-inclusive whole-genome association studies. Genet. Epidemiol. 2021;45:694–709. PubMed PMC
McLaren W, et al. The ensembl variant effect predictor. Genome Biol. 2016;17:122. PubMed PMC
Ashburner M, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000;25:25–29. PubMed PMC
Gene Ontology, C. The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 2021;49:D325–D334. PubMed PMC
Backes C, et al. Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis. BMC Genomics. 2014;15:622. PubMed PMC
McInnes G, et al. Global Biobank Engine: enabling genotype-phenotype browsing for biobank summary statistics. Bioinformatics. 2019;35:2495–2497. PubMed PMC
Gagliano Taliun SA, et al. Exploring and visualizing large-scale genetic associations by using PheWeb. Nat. Genet. 2020;52:550–552. PubMed PMC
Canela-Xandri O, Rawlik K, Tenesa A. An atlas of genetic associations in UK Biobank. Nat. Genet. 2018;50:1593–1599. PubMed PMC
Dobbyn A, et al. Landscape of conditional eQTL in dorsolateral prefrontal cortex and co-localization with schizophrenia GWAS. Am. J. Hum. Genet. 2018;102:1169–1184. PubMed PMC
Panjwani N, et al. LocusFocus: web-based colocalization for the annotation and functional follow-up of GWAS. PLoS Comput. Biol. 2020;16:e1008336. PubMed PMC
Napoletano F, et al. Polyglutamine Atrophin provokes neurodegeneration in Drosophila by repressing fat. EMBO J. 2011;30:945–958. PubMed PMC
Pao SS, Paulsen IT, Saier MH., Jr Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 1998;62:1–34. PubMed PMC
Walmsley AR, Barrett MP, Bringaud F, Gould GW. Sugar transporters from bacteria, parasites and mammals: structure-activity relationships. Trends Biochem. Sci. 1998;23:476–481. PubMed
Madej MG, Dang S, Yan N, Kaback HR. Evolutionary mix-and-match with MFS transporters. Proc. Natl Acad. Sci. USA. 2013;110:5870–5874. PubMed PMC