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Caloric restriction leads to druggable LSD1-dependent cancer stem cells expansion

. 2024 Jan 27 ; 15 (1) : 828. [epub] 20240127

Language English Country England, Great Britain Media electronic

Document type Journal Article

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PubMed 38280853
PubMed Central PMC10821871
DOI 10.1038/s41467-023-44348-y
PII: 10.1038/s41467-023-44348-y
Knihovny.cz E-resources

Caloric Restriction (CR) has established anti-cancer effects, but its clinical relevance and molecular mechanism remain largely undefined. Here, we investigate CR's impact on several mouse models of Acute Myeloid Leukemias, including Acute Promyelocytic Leukemia, a subtype strongly affected by obesity. After an initial marked anti-tumor effect, lethal disease invariably re-emerges. Initially, CR leads to cell-cycle restriction, apoptosis, and inhibition of TOR and insulin/IGF1 signaling. The relapse, instead, is associated with the non-genetic selection of Leukemia Initiating Cells and the downregulation of double-stranded RNA (dsRNA) sensing and Interferon (IFN) signaling genes. The CR-induced adaptive phenotype is highly sensitive to pharmacological or genetic ablation of LSD1, a lysine demethylase regulating both stem cells and dsRNA/ IFN signaling. CR + LSD1 inhibition leads to the re-activation of dsRNA/IFN signaling, massive RNASEL-dependent apoptosis, and complete leukemia eradication in ~90% of mice. Importantly, CR-LSD1 interaction can be modeled in vivo and in vitro by combining LSD1 ablation with pharmacological inhibitors of insulin/IGF1 or dual PI3K/MEK blockade. Mechanistically, insulin/IGF1 inhibition sensitizes blasts to LSD1-induced death by inhibiting the anti-apoptotic factor CFLAR. CR and LSD1 inhibition also synergize in patient-derived AML and triple-negative breast cancer xenografts. Our data provide a rationale for epi-metabolic pharmacologic combinations across multiple tumors.

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O’Flanagan CH, Smith LA, McDonell SB, Hursting SD. When less may be more: Calorie restriction and response to cancer therapy. BMC Med. 2017;15:106. doi: 10.1186/s12916-017-0873-x. PubMed DOI PMC

Nencioni A, Caffa I, Cortellino S, Longo VD. Fasting and cancer: molecular mechanisms and clinical application. Nat Rev Cancer. 2018;18:707–719. doi: 10.1038/s41568-018-0061-0. PubMed DOI PMC

Ibrahim, E. M., Al-Foheidi, M. H. & Al-Mansour, M. M. Energy and caloric restriction, and fasting and cancer: a narrative review. Supportive Care Cancer29, 2299–2304, (2021). PubMed PMC

García-Jiménez, C. & Goding, C. R. Starvation and Pseudo-Starvation as Drivers of Cancer Metastasis through Translation Reprogramming. Cell Metabolism29 254–267, (2019). PubMed PMC

Kalaany NY, Sabatini DM. Tumours with PI3K activation are resistant to dietary restriction. Nature. 2009;458:725–731. doi: 10.1038/nature07782. PubMed DOI PMC

Berrigan D, Perkins SN, Haines DC, Hursting SD. Adult-onset calorie restriction and fasting delay spontaneous tumorigenesis in p53-deficient mice. Carcinogenesis. 2002;23:817–822. doi: 10.1093/carcin/23.5.817. PubMed DOI

Yamaza H, et al. Involvement of insulin-like growth factor-1 in the effect of caloric restriction: Regulation of plasma adiponectin and leptin. J. Gerontol. Ser. A Biol. Sci. Med. Sci. 2007;62:27–33. doi: 10.1093/gerona/62.1.27. PubMed DOI

Li T, et al. Calorie restriction prevents the development of insulin resistance and impaired lipid metabolism in gestational diabetes offspring. Pediatr Res. 2017;81:663–671. doi: 10.1038/pr.2016.273. PubMed DOI

Blagosklonny, M. V. Calorie restriction: decelerating mTOR-driven aging from cells to organisms (including humans). Cell Cycle9 683–688, (2010). PubMed

Meynet, O. & Ricci, J. E. Caloric restriction and cancer: Molecular mechanisms and clinical implications. Trends Mol. Med.20 419–427, (2014). PubMed

Cohen HY, et al. Calorie restriction promotes mammalian cell survival by inducing the SIRT1 deacetylase. Science. 2004;305:390–392. doi: 10.1126/science.1099196. PubMed DOI

Price JC, et al. The effect of long term calorie restriction on in vivo hepatic proteostatis: A novel combination of dynamic and quantitative proteomics. Mol. Cell. Proteomics. 2012;11:1801–1814. doi: 10.1074/mcp.M112.021204. PubMed DOI PMC

Green, C. L., Lamming, D. W. & Fontana, L. Molecular mechanisms of dietary restriction promoting health and longevity. Nat. Rev. Mol. Cell Biol.23, 56–73, (2022). PubMed PMC

Chung, K. W. & Chung, H. Y. The effects of calorie restriction on autophagy: role on aging intervention. Nutrients11, 2923, (2019). PubMed PMC

Meydani SN, et al. Long-term moderate calorie restriction inhibits inflammation without impairing cell-mediated immunity: A randomized controlled trial in non-obese humans. Aging. 2016;8:1416–1431. doi: 10.18632/aging.100994. PubMed DOI PMC

Kadharusman, M. M., Antarianto, R. D. & Hardiany, N. S. A review of the impact of calorie restriction on stem cell potency. Malaysian J. Med. Sci.28, 5–13, (2021). PubMed PMC

Spadaro, O. et al. Caloric restriction in humans reveals immunometabolic regulators of health span. https://www.science.org. PubMed PMC

Breccia M, et al. Increased BMI correlates with higher risk of disease relapse and differentiation syndrome in patients with acute promyelocytic leukemia treated with the AIDA protocols. Blood. 2012;119:49–54. doi: 10.1182/blood-2011-07-369595. PubMed DOI

Mazzarella L, et al. Obesity is a risk factor for acute promyelocytic leukemia: evidence from population and cross-sectional studies and correlation with FLT3 mutations and polyunsaturated fatty acid metabolism. Haematologica. 2020;105:1559–1566. doi: 10.3324/haematol.2019.223925. PubMed DOI PMC

Insinga A, et al. Inhibitors of histone deacetylases induce tumor-selective apoptosis through activation of the death receptor pathway. Nat Med. 2005;11:71–76. doi: 10.1038/nm1160. PubMed DOI

Minucci S, et al. PML-RAR induces promyelocytic leukemias with high efficiency following retroviral gene transfer into purified murine hematopoietic progenitors. Blood. 2002;100:2989–2995. doi: 10.1182/blood-2001-11-0089. PubMed DOI

Mallardo M, et al. NPMc+ and FLT3_ITD mutations cooperate in inducing acute leukaemia in a novel mouse model. Leukemia. 2013;27:2248–2251. doi: 10.1038/leu.2013.114. PubMed DOI

Saito Y, Chapple RH, Lin A, Kitano A, Nakada D. AMPK protects leukemia-initiating cells in myeloid leukemias from metabolic stress in the bone marrow. Cell Stem Cell. 2015;17:585–596. doi: 10.1016/j.stem.2015.08.019. PubMed DOI PMC

Dunn SE, et al. Dietary restriction reduces insulin-like growth factor I levels, which modulates apoptosis, cell proliferation, and tumor progression in p53- deficient mice. Cancer Res. 1997;57:4667–4672. PubMed

Shelton LM, Huysentruyt LC, Mukherjee P, Seyfried TN. Calorie restriction as an anti-invasive therapy for malignant brain cancer in the VM mouse. ASN Neuro. 2010;2:e00038. doi: 10.1042/AN20100002. PubMed DOI PMC

Lashinger LM, et al. Genetic reduction of insulin-like growth factor-1 mimics the anticancer effects of calorie restriction on cyclooxygenase-2-driven pancreatic neoplasia. Cancer Prev. Res. 2011;4:1030–1040. doi: 10.1158/1940-6207.CAPR-11-0027. PubMed DOI PMC

Hu Y, Smyth GK. ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays. J. Immunol. Methods. 2009;347:70–78. doi: 10.1016/j.jim.2009.06.008. PubMed DOI

Guibal FC, et al. Identification of a myeloid committed progenitor as the cancer-initiating cell in acute promyelocytic leukemia. Blood. 2009;114:5415–5425. doi: 10.1182/blood-2008-10-182071. PubMed DOI PMC

Tang D, et al. Dietary restriction improves repopulation but impairs lymphoid differentiation capacity of hematopoietic stem cells in early aging. J. Exp. Med. 2016;213:535–553. doi: 10.1084/jem.20151100. PubMed DOI PMC

Hofmann JW, et al. Reduced expression of MYC increases longevity and enhances healthspan. Cell. 2015;160:477–488. doi: 10.1016/j.cell.2014.12.016. PubMed DOI PMC

Vitale, G., Pellegrino, G., Vollery, M. & Hofland, L. J. ROLE of IGF-1 system in the modulation of longevity: Controversies and new insights from a centenarians’ perspective. Front. Endocrinol.10, 27, (2019). PubMed PMC

Bhasker CR, Friedmann T. Insulin-like growth factor-1 coordinately induces the expression of fatty acid and cholesterol biosynthetic genes in murine C2C12 myoblasts. BMC Genomics. 2008;9:535. doi: 10.1186/1471-2164-9-535. PubMed DOI PMC

Sofía Pais R, et al. Transcriptome analysis in prenatal IGF1-deficient mice identifies molecular pathways and target genes involved in distal lung differentiation. PLoS One. 2013;8:e83028. doi: 10.1371/journal.pone.0083028. PubMed DOI PMC

Lu Z, et al. Fasting selectively blocks development of acute lymphoblastic leukemia via leptin-receptor upregulation. Nat. Med. 2017;23:79–90. doi: 10.1038/nm.4252. PubMed DOI PMC

di Biase S, et al. Fasting-mimicking diet reduces HO-1 to promote T cell-mediated tumor cytotoxicity. Cancer Cell. 2016;30:136–146. doi: 10.1016/j.ccell.2016.06.005. PubMed DOI PMC

Diebold SS, et al. Viral infection switches non-plasmacytoid dendritic cells into high interferon producers. Nature. 2003;424:324–328. doi: 10.1038/nature01783. PubMed DOI

DeWitte-Orr SJ, et al. Long double-stranded RNA induces an antiviral response independent of IFN regulatory factor 3, IFN-β promoter stimulator 1, and IFN. J. Immunol. 2009;183:6545–6553. doi: 10.4049/jimmunol.0900867. PubMed DOI PMC

Sheng W, et al. LSD1 ablation stimulates anti-tumor immunity and enables checkpoint blockade. Cell. 2018;174:549–563.e19. doi: 10.1016/j.cell.2018.05.052. PubMed DOI PMC

Yang, E. & Li, M. M. H. All About the RNA: interferon-stimulated genes that interfere with viral RNA processes. Front. Immunol.11, 605024, (2020). PubMed PMC

Sadeq S, Al-Hashimi S, Cusack CM, Werner A. Endogenous double-stranded RNA. Noncoding RNA. 2021;7:15. PubMed PMC

Essers MAG, et al. IFNα activates dormant haematopoietic stem cells in vivo. Nature. 2009;458:904–908. doi: 10.1038/nature07815. PubMed DOI

Sato T, et al. Interferon regulatory factor-2 protects quiescent hematopoietic stem cells from type i interferon-dependent exhaustion. Nat. Med. 2009;15:696–700. doi: 10.1038/nm.1973. PubMed DOI

Karakaidos P, Verigos J, Magklara A. Lsd1/kdm1a, a gate-keeper of cancer stemness and a promising therapeutic target. Cancers. 2019;11:1821. doi: 10.3390/cancers11121821. PubMed DOI PMC

Fang, Y., Liao, G. & Yu, B. LSD1/KDM1A inhibitors in clinical trials: advances and prospects. J. Hematol. Oncol.12, 129, (2019). PubMed PMC

Foster, D. A. & Toschi, A. Targeting mTOR with rapamycin: One dose does not fit all. Cell Cycle8, 1026–1029, (2009). PubMed PMC

Liu H, et al. Tumor-derived IFN triggers chronic pathway agonism and sensitivity to ADAR loss. Nat. Med. 2019;25:95–102. doi: 10.1038/s41591-018-0302-5. PubMed DOI

Dabo, S. & Meurs, E. F. dsRNA-dependent protein kinase PKR and its role in stress, signaling and HCV infection. Viruses4, 2598–2635 (2012). PubMed PMC

Qu Y, et al. Novel gene signature reveals prognostic model in acute myeloid leukemia. Front. Genet. 2020;11:566024. doi: 10.3389/fgene.2020.566024. PubMed DOI PMC

Cabezas-Wallscheid N, et al. Vitamin A-retinoic acid signaling regulates hematopoietic stem cell dormancy. Cell. 2017;169:807–823.e19. doi: 10.1016/j.cell.2017.04.018. PubMed DOI

Venezia TA, et al. Molecular signatures of proliferation and quiescence in hematopoietic stem cells. PLoS Biol. 2004;2:e301. doi: 10.1371/journal.pbio.0020301. PubMed DOI PMC

Olsson A, et al. Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. Nature. 2016;537:698–702. doi: 10.1038/nature19348. PubMed DOI PMC

Gaillard C, et al. Identification of IRF8 as a potent tumor suppressor in murine acute promyelocytic leukemia. Blood Adv. 2018;2:2462–2466. doi: 10.1182/bloodadvances.2018018929. PubMed DOI PMC

Shigeno M, et al. Interferon-α sensitizes human hepatoma cells to TRAIL-induced apoptosis through DR5 upregulation and NF-κB inactivation. Oncogene. 2003;22:1653–1662. doi: 10.1038/sj.onc.1206139. PubMed DOI

Chen JJ, Knudsen S, Mazin W, Dahlgaard J, Zhang B. A 71-gene signature of TRAIL sensitivity in cancer cells. Mol. Cancer Ther. 2012;11:34–44. doi: 10.1158/1535-7163.MCT-11-0620. PubMed DOI

Banerjee S, et al. OAS-RNase L innate immune pathway mediates the cytotoxicity of a DNA-demethylating drug. Proc. Natl Acad. Sci. USA. 2019;116:5071–5076. doi: 10.1073/pnas.1815071116. PubMed DOI PMC

Wang, S. & El-Deiry, W. S. TRAIL and apoptosis induction by TNF-family death receptors. Oncogene22, 8628–8633 (2003). PubMed

Humphreys LM, et al. A revised model of TRAIL ‐R2 DISC assembly explains how FLIP (L) can inhibit or promote apoptosis. EMBO Rep. 2020;21:e49254. doi: 10.15252/embr.201949254. PubMed DOI PMC

Toivonen HT, et al. Modeling reveals that dynamic regulation of c-FLIP levels determines cell-to-cell distribution of CD95-mediated apoptosis. J. Biol. Chem. 2011;286:18375–18382. doi: 10.1074/jbc.M110.177097. PubMed DOI PMC

Allavena G, et al. Suppressed translation as a mechanism of initiation of CASP8 (caspase 8)-dependent apoptosis in autophagy-deficient NSCLC cells under nutrient limitation. Autophagy. 2018;14:252–268. doi: 10.1080/15548627.2017.1405192. PubMed DOI PMC

Pacini C, et al. Integrated cross-study datasets of genetic dependencies in cancer. Nat. Commun. 2021;12:1661. doi: 10.1038/s41467-021-21898-7. PubMed DOI PMC

Birdwell LD, et al. Activation of RNase L by murine coronavirus in myeloid cells is dependent on basal oas gene expression and independent of virus-induced interferon. J. Virol. 2016;90:3160–3172. doi: 10.1128/JVI.03036-15. PubMed DOI PMC

Punzi S, et al. Development of personalized therapeutic strategies by targeting actionable vulnerabilities in metastatic and chemotherapy-resistant breast cancer pdxs. Cells. 2019;8:605. doi: 10.3390/cells8060605. PubMed DOI PMC

Abdel-Aziz AK, et al. Tuning mTORC1 activity dictates the response to LSD1 inhibition of acute myeloid leukemia. Haematologica. 2020;105:2105–2117. doi: 10.3324/haematol.2019.224501. PubMed DOI PMC

Deb G, et al. Pre-clinical activity of combined LSD1 and mTORC1 inhibition in MLL-translocated acute myeloid leukaemia. Leukemia. 2020;34:1266–1277. doi: 10.1038/s41375-019-0659-6. PubMed DOI PMC

Wang, P., Mak, V. C. & Cheung, L. W. Drugging IGF-1R in cancer: new insights and emerging opportunities. Genes Dis.10, 199–211, (2022). PubMed PMC

Cheng Y, Tian H. Current development status of MEK inhibitors. Molecules. 2017;22:1551. doi: 10.3390/molecules22101551. PubMed DOI PMC

Mishra R, Patel H, Alanazi S, Kilroy MK, Garrett JT. PI3K inhibitors in cancer: clinical implications and adverse effects. Int. J. Mol. Sci. 2021;22:3464. doi: 10.3390/ijms22073464. PubMed DOI PMC

Vianello P, et al. Discovery of a novel inhibitor of histone lysine-specific demethylase 1A (KDM1A/LSD1) as orally active antitumor agent. J. Med. Chem. 2016;59:1501–1517. doi: 10.1021/acs.jmedchem.5b01209. PubMed DOI

Ravasio R, et al. Targeting the scaffolding role of LSD1 (KDM1A) poises acute myeloid leukemia cells for retinoic acid-induced differentiation. Sci. Adv. 2020;6:eaax2746. doi: 10.1126/sciadv.aax2746. PubMed DOI PMC

Grisolano JL, Wesselschmidt RL, Pelicci PG, Ley TJ. Altered myeloid development and acute leukemia in transgenic mice expressing PML-RARα under control of cathepsin G regulatory sequences. Blood. 1997;89:376–387. doi: 10.1182/blood.V89.2.376. PubMed DOI

Leiva M, et al. Valproic acid induces differentiation and transient tumor regression, but spares leukemia-initiating activity in mouse models of APL. Leukemia. 2012;26:1630–1637. doi: 10.1038/leu.2012.39. PubMed DOI

Esposito MT, et al. Synthetic lethal targeting of oncogenic transcription factors in acute leukemia by PARP inhibitors. Nat. Med. 2015;21:1481–1490. doi: 10.1038/nm.3993. PubMed DOI

Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754–1760. doi: 10.1093/bioinformatics/btp324. PubMed DOI PMC

Li H, et al. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25:2078–2079. doi: 10.1093/bioinformatics/btp352. PubMed DOI PMC

McKenna A, et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20:1297–1303. doi: 10.1101/gr.107524.110. PubMed DOI PMC

Cibulskis K, et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 2013;31:213–219. doi: 10.1038/nbt.2514. PubMed DOI PMC

Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010;38:e164. doi: 10.1093/nar/gkq603. PubMed DOI PMC

Campbell PJ, et al. Pan-cancer analysis of whole genomes. Nature. 2020;578:82–93. doi: 10.1038/s41586-020-1969-6. PubMed DOI PMC

Trapnell C, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 2012;7:562–578. doi: 10.1038/nprot.2012.016. PubMed DOI PMC

Anders S, Pyl PT, Huber W. HTSeq-A Python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31:562–578. doi: 10.1093/bioinformatics/btu638. PubMed DOI PMC

Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2009;26:139–140. doi: 10.1093/bioinformatics/btp616. PubMed DOI PMC

Zheng GXY, et al. Massively parallel digital transcriptional profiling of single cells. Nat. Commun. 2017;8:14049. doi: 10.1038/ncomms14049. PubMed DOI PMC

Stuart T, et al. Comprehensive integration of single-cell data. Cell. 2019;177:1888–1902.e21. doi: 10.1016/j.cell.2019.05.031. PubMed DOI PMC

Dobin A, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29:15–21. doi: 10.1093/bioinformatics/bts635. PubMed DOI PMC

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010;26:841–842. doi: 10.1093/bioinformatics/btq033. PubMed DOI PMC

Enright, A. J., van Dongen, S. & Ouzounis, C. A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res.30, 1575–1584 (2002). PubMed PMC

Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550. doi: 10.1186/s13059-014-0550-8. PubMed DOI PMC

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