Fine-mapping genomic loci refines bipolar disorder risk genes
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic
Typ dokumentu časopisecké články, preprinty
Grantová podpora
U01 MH085520
NIMH NIH HHS - United States
MRF-001-0012-RG-COLE-C0930
MRF_ - United Kingdom
R01 MH124839
NIMH NIH HHS - United States
U01 MH094421
NIMH NIH HHS - United States
U01 MH109528
NIMH NIH HHS - United States
S10 OD018522
NIH HHS - United States
S10 OD026880
NIH HHS - United States
PubMed
38405768
PubMed Central
PMC10889003
DOI
10.1101/2024.02.12.24302716
PII: 2024.02.12.24302716
Knihovny.cz E-zdroje
- Publikační typ
- časopisecké články MeSH
- preprinty MeSH
Bipolar disorder (BD) is a heritable mental illness with complex etiology. While the largest published genome-wide association study identified 64 BD risk loci, the causal SNPs and genes within these loci remain unknown. We applied a suite of statistical and functional fine-mapping methods to these loci, and prioritized 17 likely causal SNPs for BD. We mapped these SNPs to genes, and investigated their likely functional consequences by integrating variant annotations, brain cell-type epigenomic annotations, brain quantitative trait loci, and results from rare variant exome sequencing in BD. Convergent lines of evidence supported the roles of genes involved in neurotransmission and neurodevelopment including SCN2A, TRANK1, DCLK3, INSYN2B, SYNE1, THSD7A, CACNA1B, TUBBP5, PLCB3, PRDX5, KCNK4, CRTC3, AP001453.3, TRPT1, FKBP2, DNAJC4, RASGRP1, FURIN, FES, DPH1, GSDMB, MED24 and THRA in BD. These represent promising candidates for functional experiments to understand biological mechanisms and therapeutic potential. Additionally, we demonstrated that fine-mapping effect sizes can improve performance of BD polygenic risk scores across diverse populations, and present a high-throughput fine-mapping pipeline (https://github.com/mkoromina/SAFFARI).
Analytic and Translational Genetics Unit Massachusetts General Hospital Boston MA USA
Biochemistry and Molecular Biology Indiana University School of Medicine Indianapolis IN USA
Centre for Human Genetics University of Marburg Marburg Germany
Centro de Biología Molecular Severo Ochoa Universidad Autónoma de Madrid and CSIC Madrid Spain
Clinical Research Center Shizuoka General Hospital Shizuoka Japan
Department of Biomedicine University of Basel Basel Switzerland
Department of Clinical Neuroscience Karolinska Institutet Stockholm Sweden
Department of Clinical Sciences Psychiatry Umeå University Medical Faculty Umeå Sweden
Department of Environmental Epidemiology Nofer Institute of Occupational Medicine Lodz Poland
Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai New York NY USA
Department of Health Sciences Research Mayo Clinic Rochester MN USA
Department of Medical and Molecular Genetics Indiana University Indianapolis IN USA
Department of Medical Epidemiology and Biostatistics Karolinska Institutet Stockholm Sweden
Department of Medicine and Surgery Kore University of Enna Italy
Department of Neuroscience Icahn School of Medicine at Mount Sinai New York NY USA
Department of Neuroscience SUNY Upstate Medical University Syracuse NY USA
Department of Psychiatry and Addiction Medicine Assistance Publique Hôpitaux de Paris Paris France
Department of Psychiatry and Behavioral Sciences SUNY Upstate Medical University Syracuse NY USA
Department of Psychiatry and Forensic Medicine Universitat Autònoma de Barcelo Barcelo Spain
Department of Psychiatry and Genetics Institute University of Florida Gainesville FL USA
Department of Psychiatry and Neurobehavioural Science University College Cork Cork Ireland
Department of Psychiatry and Psychology Mayo Clinic Rochester MN USA
Department of Psychiatry and Psychotherapy Charité Universitätsmedizin Berlin Germany
Department of Psychiatry and Psychotherapy University Medical Center Göttingen Göttingen Germany
Department of Psychiatry and Psychotherapy University of Marburg Germany
Department of Psychiatry and Psychotherapy University of Marburg Marburg Germany
Department of Psychiatry Dalhousie University Halifax NS Canada
Department of Psychiatry Fujita Health University School of Medicine Toyoake Japan
Department of Psychiatry Hospital Universitari Vall d´Hebron Barcelo Spain
Department of Psychiatry Hospital Universitari Vall d´Hebron Barcelona Spain
Department of Psychiatry Icahn School of Medicine at Mount Sinai New York NY USA
Department of Psychiatry Massachusetts General Hospital Boston MA USA
Department of Psychiatry University of British Columbia Vancouver British Columbia Canada
Department of Psychiatry University of California San Diego La Jolla CA USA
Department of Psychiatry University of Melbourne VIC Australia
Department of Psychiatry University of Münster Münster Germany
Department of Psychiatry University of North Caroli at Chapel Hill Chapel Hill NC USA
Department of Psychological Sciences University of Missouri Columbia MO USA
Department of Psychology Emory University Atlanta GA USA
Department of Quantitative Health Sciences Research Mayo Clinic Rochester MN USA
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry Munich Germany
Departments of Psychiatry and Medical and Molecular Genetics Indiana University School of Medicine
Division of Clinical Research Massachusetts General Hospital Boston MA USA
Division of Mental Health and Addiction Oslo University Hospital Oslo Norway
Division of Psychiatry Centre for Clinical Brain Sciences The University of Edinburgh Edinburgh UK
Division of Psychiatry University College London London UK
Functional Genomics Laboratory School of Medicine University of California Irvine Canada
Genetics and Computational Biology QIMR Berghofer Medical Research Institute Brisbane QLD Australia
German Center for Mental Health partner site Mannheim Heidelberg Ulm Germany
Hudsolpha Institute for Biotechnology Huntsville AL USA
Indiana University School of Medicine
Institute for Genomic Health SUNY Downstate Medical Center College of Medicine Brooklyn NY USA
Institute for Translational Psychiatry University of Münster Münster Germany
Institute of Environmental Medicine Karolinska Institutet Stockholm Sweden
Institute of Medical Genetics and Pathology University Hospital Basel Basel Switzerland
Institute of Neuroscience and Medicine Research Centre Jülich Jülich Germany
Institute of Neuroscience and Physiology University of Gothenburg Gothenburg Sweden
Institute of Psychiatric Phenomics and Genomics University Hospital LMU Munich Munich Germany
Instituto de Salud Carlos 3 Biomedical Network Research Centre on Mental Health Madrid Spain
Medical University of Graz Division of Psychiatry and Psychotherapeutic Medicine Graz Austria
Mental Health Department University Regional Hospital Biomedicine Institute Málaga Spain
Munich Cluster for Systems Neurology Munich Germany
National Institute of Mental Health Klecany Czech Republic
Neuroscience Research Australia Sydney NSW Australia
NIHR Maudsley Biomedical Research Centre South London and Maudsley NHS Foundation Trust London UK
NORMENT University of Oslo Oslo Norway
Oasi Research Institute IRCCS Troina Italy
Psychiatric and Neurodevelopmental Genetics Unit Massachusetts General Hospital Boston MA USA
Psychiatry Harvard Medical School Boston MA USA
Psychological Medicine University of Worcester Worcester UK
Research Institute Lindner Center of HOPE Mason OH USA
Research Psychiatry Veterans Affairs San Diego Healthcare System San Diego CA USA
Ronald M Loeb Center for Alzheimer's Disease Icahn School of Medicine at Mount Sinai New York NY USA
School of Psychology The University of Queensland Brisbane QLD Australia
Social Genetic and Developmental Psychiatry Centre King's College London London UK
Stanley Center for Psychiatric Research Broad Institute Cambridge MA USA
Stark Neurosciences Research Institute Indiana University School of Medicine
SUNY Downstate Health Sciences University
United Arab Emirates University Zayed Center for Health Sciences Al Ain United Arab Emirates
University of Newcastle Newcastle NSW Australia
University of Paris Est Créteil INSERM IMRB Translatiol Neuropsychiatry Créteil France
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