Unified Simulation Platform for Interference Microscopy

. 2024 Jul 17 ; 11 (7) : 2745-2756. [epub] 20240617

Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid39036062

Interferometric scattering microscopy is a powerful technique that enables various applications, such as mass photometry and particle tracking. Here, we present a numerical toolbox to simulate images obtained in interferometric scattering, coherent bright-field, and dark-field microscopies. The scattered fields are calculated using a boundary element method, facilitating the simulation of arbitrary sample geometries and substrate layer structures. A fully vectorial model is used for simulating the imaging setup. We demonstrate excellent agreement between our simulations and experiments for different shapes of scatterers and excitation angles. Notably, for angles near the Brewster angle, we observe a contrast enhancement which may be beneficial for nanosensing applications. The software is available as a matlab toolbox.

Zobrazit více v PubMed

Young G.; Hundt N.; Cole D.; Fineberg A.; Andrecka J.; Tyler A.; Olerinyova A.; Ansari A.; Marklund E. G.; Collier M. P.; et al. Quantitative mass imaging of single biological macromolecules. Science 2018, 360, 423–427. 10.1126/science.aar5839. PubMed DOI PMC

Taylor R. W.; Mahmoodabadi R. G.; Rauschenberger V.; Giessl A.; Schambony A.; Sandoghdar V. Interferometric scattering microscopy reveals microsecond nanoscopic protein motion on a live cell membrane. Nat. Photonics 2019, 13, 480–487. 10.1038/s41566-019-0414-6. DOI

Huang Y.-F.; Zhuo G.-Y.; Chou C.-Y.; Lin C.-H.; Chang W.; Hsieh C.-L. Coherent Brightfield Microscopy Provides the Spatiotemporal Resolution To Study Early Stage Viral Infection in Live Cells. ACS Nano 2017, 11, 2575–2585. 10.1021/acsnano.6b05601. PubMed DOI

Huang Y.-F.; Zhuo G.-Y.; Chou C.-Y.; Lin C. H.; Hsieh C.-L. Label-free, ultrahigh-speed, 3D observation of bidirectional and correlated intracellular cargo transport by coherent brightfield microscopy. Nanoscale 2017, 9, 6567–6574. 10.1039/c7nr00604g. PubMed DOI

Dong J.; Maestre D.; Conrad-Billroth C.; Juffmann T. Fundamental bounds on the precision of iSCAT, COBRI and dark-field microscopy for 3D localization and mass photometry. J. Phys. D 2021, 54, 394002.10.1088/1361-6463/ac0f22. DOI

Gholami Mahmoodabadi R.; Taylor R. W.; Kaller M.; Spindler S.; Mazaheri M.; Kasaian K.; Sandoghdar V. Point spread function in interferometric scattering microscopy (iSCAT). Part I: aberrations in defocusing and axial localization. Opt. Express 2020, 28, 25969.10.1364/oe.401374. PubMed DOI

Li N.; Canady T. D.; Huang Q.; Wang X.; Fried G. A.; Cunningham B. T. Photonic resonator interferometric scattering microscopy. Nat. Commun. 2021, 12, 1744.10.1038/s41467-021-21999-3. PubMed DOI PMC

Lin S.; He Y.; Feng D.; Piliarik M.; Chen X.-W. Optical Fingerprint of Flat Substrate Surface and Marker-Free Lateral Displacement Detection with Angstrom-Level Precision. Phys. Rev. Lett. 2022, 129, 213201.10.1103/PhysRevLett.129.213201. PubMed DOI

Shi Z.; Huang J.; Huang X.; Huang Y.; Wu L.; Li Q. Resonant scattering enhanced interferometric scattering microscopy. Nanoscale 2020, 12, 7969–7975. 10.1039/C9NR10391K. PubMed DOI

He Y.; Lin S.; Marc Louis Robert H.; Li H.; Zhang P.; Piliarik M.; Chen X.-W. Multiscale modeling and analysis for high-fidelity interferometric scattering microscopy. J. Phys. D 2021, 54, 274002.10.1088/1361-6463/abf70d. DOI

Chew W. C.Waves and Fields in Inhomogeneous Media; IEEE Press: Picsatoway, 1995.

Hohenester U.Nano and Quantum Optics; Springer: Cham, Switzerland, 2020.

Hohenester U.; Reichelt N.; Unger G. Nanophotonic resonance modes with the nanobem toolbox. Comput. Phys. Commun. 2022, 276, 108337.10.1016/j.cpc.2022.108337. DOI

Hohenester U. Nanophotonic resonators in stratified media with the nanobem toolbox. Comput. Phys. Commun. 2024, 294, 108949.10.1016/j.cpc.2023.108949. DOI

Richards B.; Wolf E. Electromagnetic simulation in optical systems II. Structure of the image field in an aplanatic system. Proc. R. Soc. London, Ser. A 1959, 253, 358.10.1098/rspa.1959.0200. DOI

Novotny L.; Hecht B.. Principles of Nano-Optics; Cambridge University Press: Cambridge, 2006.

Stratton J. A.; Chu L. J. Diffraction Theory of Electromagnetic Waves. Phys. Rev. 1939, 56, 99–107. 10.1103/PhysRev.56.99. DOI

Khadir S.; Chaumet P. C.; Baffou G.; Sentenac A. Quiantitative model of the image of a radiating dipole through a microscope. J. Opt. Soc. Am. 2019, 36, 478.10.1364/JOSAA.36.000478. PubMed DOI

Hecht E.Optics; Addison-Wesley, Reading, 1998.

Chew W. C.; Xiong J. L.; Saville M. A. A Matrix-Friendly Formulation of Layered Medium Green’s Function. IEEE Antennas Wireless Propagt. Lett. 2006, 5, 490–494. 10.1109/LAWP.2006.886306. DOI

Chew W. C.; Tong M. S.; Hu B.. Integral Equation Methods for Electromagnetic and Elastic Waves; Morgan and Claypool, 2009.

Johnson P. B.; Christy R. W. Optical constants of the noble metals. Phys. Rev. B 1972, 6, 4370–4379. 10.1103/PhysRevB.6.4370. DOI

Schuller J. A.; Barnard E. S.; Cai W.; Jun Y. C.; White J. S.; Brongersma M. L. Plasmonics for extreme light concentration and manipulation. Nat. Mater. 2010, 9, 193–204. 10.1038/nmat2630. PubMed DOI

Liebel M.; Hugall J. T.; van Hulst N. F. Ultrasensitive Label-Free Nanosensing and High-Speed Tracking of Single Proteins. Nano Lett. 2017, 17, 1277–1281. 10.1021/acs.nanolett.6b05040. PubMed DOI

Cole D.; Young G.; Weigel A.; Sebesta A.; Kukura P. Label-Free Single-Molecule Imaging with Numerical-Aperture-Shaped Interferometric Scattering Microscopy. ACS Photonics 2017, 4, 211–216. 10.1021/acsphotonics.6b00912. PubMed DOI PMC

Cheng C.-Y.; Liao Y.-H.; Hsieh C.-L. High-speed imaging and tracking of very small single nanoparticles by contrast enhanced microscopy. Nanoscale 2019, 11, 568–577. 10.1039/C8NR06789A. PubMed DOI

Buffa A.; Hiptmair R.; Petersdorff T. v.; Schwab C. Boundary Element Methods for Maxwell Transmission Problems in Lipschitz Domains. Numer. Math. 2003, 95, 459–485. 10.1007/s00211-002-0407-z. DOI

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...