Introducing a global database of entomopathogenic fungi and their host associations
Jazyk angličtina Země Anglie, Velká Británie Médium electronic
Typ dokumentu dataset, časopisecké články
Grantová podpora
2023 Student Mobility Grant to F.C.D.W.
EC | Erasmus+
Senior Postdoctoral Fellowship 1206024N to D.H.
Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders)
PubMed
39709508
PubMed Central
PMC11663221
DOI
10.1038/s41597-024-04103-4
PII: 10.1038/s41597-024-04103-4
Knihovny.cz E-zdroje
- MeSH
- biodiverzita MeSH
- databáze faktografické * MeSH
- hmyz * mikrobiologie MeSH
- hostitelská specificita MeSH
- Hypocreales * MeSH
- interakce mikroorganismu a hostitele * MeSH
- internacionalita * MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- dataset MeSH
Pathogens significantly influence natural and agricultural ecosystems, playing a crucial role in the regulation of species populations and maintaining biodiversity. Entomopathogenic fungi (EF), particularly within the Hypocreales order, exemplify understudied pathogens that infect insects and other arthropods globally. Despite their ecological importance, comprehensive data on EF host specificity and geographical distribution are lacking. To address this, we present EntomoFun 1.0, an open-access database centralizing global records of EF-insect associations in Hypocreales. This database includes 1,791 records detailing EF species, insect host taxa, countries of occurrence, life stages of hosts, and information sources. EntomoFun 1.0 is constructed based on 600 literature sources, as well as herbarium specimens of the Royal Botanical Gardens, Kew. This database is intended to test hypotheses, identify knowledge gaps, and stimulate future research. Contents of the EntomoFun 1.0 database are visualized with a global map, taxonomic chart, bipartite community network, and graphs.
Department of Zoology Faculty of Science University of South Bohemia Ceske Budejovice Czech Republic
Research Group Mycology Department of Biology Ghent University Ghent Belgium
Royal Botanic Gardens Kew Richmond United Kingdom
School of Biological and Behavioural Sciences Queen Mary University of London London United Kingdom
School of Ecology Shenzhen Campus of Sun Yat sen University Shenzhen Guangdong 518107 China
Zobrazit více v PubMed
Singh, B. K. et al. Climate change impacts on plant pathogens, food security and paths forward. Nat. Rev. Microbiol.21, 640–656 (2023). PubMed PMC
Lyles, A. M. & Dobson, A. P. Infectious Disease and Intensive Management: Population Dynamics, Threatened Hosts, and Their Parasites. J. Zoo Wildl. Med.24, 315–326 (1993).
Woolhouse, M. E. J., Taylor, L. H. & Haydon, D. T. Population Biology of Multihost Pathogens. Science292, 1109–1112 (2001). PubMed
Dwyer, G. Density Dependence and Spatial Structure in the Dynamics of Insect Pathogens. Am. Nat.143, 533–562 (1994).
Liu, W.-C., Bonsall, M. B. & Godfray, H. C. J. The form of host density-dependence and the likelihood of host–pathogen cycles in forest-insect systems. Theor. Popul. Biol.72, 86–95 (2007). PubMed
Greer, A. L., Briggs, C. J. & Collins, J. P. Testing a key assumption of host‐pathogen theory: density and disease transmission. Oikos117, 1667–1673 (2008).
Burdon, J. J. & Thrall, P. H. Pathogen evolution across the agro‐ecological interface: implications for disease management. Evol. Appl.1, 57–65 (2008). PubMed PMC
Hortal, J. et al. Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity. Annu. Rev. Ecol. Evol. Syst.46, 523–549 (2015).
Araújo, J. P. M. & Hughes, D. P. Diversity of Entomopathogenic Fungi: Which Groups Conquered the Insect Body? in Advances in Genetics vol. 94 1–39 (Elsevier, 2016). PubMed
Kaishian, P. et al. Definitions of parasites and pathogens through time. Preprint at 10.22541/au.165712662.22738369/v2 (2024).
Mora, M. A. E., Castilho, A. M. C. & Fraga, M. E. Classification and infection mechanism of entomopathogenic fungi. Arq. Inst. Biológico84 (2018).
Andersen, S. B. et al. The Life of a Dead Ant: The Expression of an Adaptive Extended Phenotype. Am. Nat.174, 424–433 (2009). PubMed
De Bekker, C., Beckerson, W. C. & Elya, C. Mechanisms behind the Madness: How Do Zombie-Making Fungal Entomopathogens Affect Host Behavior To Increase Transmission? mBio12, e01872–21 (2021). PubMed PMC
Rosenberg, Y. et al. The global biomass and number of terrestrial arthropods. Sci. Adv.9, eabq4049 (2023). PubMed PMC
Stork, N. E. How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth? Annu. Rev. Entomol.63, 31–45 (2018). PubMed
St. Leger, R. J. Insects and their pathogens in a changing climate. J. Invertebr. Pathol.184, 107644 (2021). PubMed
Fournier, A., Penone, C., Pennino, M. G. & Courchamp, F. Predicting future invaders and future invasions. Proc. Natl. Acad. Sci.116, 7905–7910 (2019). PubMed PMC
Timms, R. & Read, A. F. What makes a specialist special? Trends Ecol. Evol.14, 333–334 (1999). PubMed
Meyling, N. V. & Hajek, A. E. Principles from community and metapopulation ecology: application to fungal entomopathogens. BioControl55, 39–54 (2010).
Tylianakis, J. M., Laliberté, E., Nielsen, A. & Bascompte, J. Conservation of species interaction networks. Biol. Conserv.143, 2270–2279 (2010).
Hajek, A. E., Junior, I. D. & Butler, L. Entomopathogenic Fungi as Classical Biological Control Agents. in Environmental Impacts of Microbial Insecticides (eds. Hokkanen, H. M. T. & Hajek, A. E.) 15–34, 10.1007/978-94-017-1441-9_2 (Springer Netherlands, Dordrecht, 2003).
Evans, H. C. Entomogenous fungi in tropical forest ecosystems: an appraisal. Ecol. Entomol.7, 47–60 (1982).
Quandt, C. A. & Haelewaters, D. Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi. in Encyclopedia of Mycology 284–294, 10.1016/B978-0-12-819990-9.00052-4 (Elsevier, 2021).
Haelewaters, D. et al. Biological knowledge shortfalls impede conservation efforts in poorly studied taxa—A case study of Laboulbeniomycetes. J. Biogeogr.51, 29–39 (2024).
Reichman, O. J., Jones, M. B. & Schildhauer, M. P. Challenges and Opportunities of Open Data in Ecology. Science331, 703–705 (2011). PubMed
Dorey, J. B. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci. Data10, 747 (2023). PubMed PMC
Wilkinson, M. D. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data3, 160018 (2016). PubMed PMC
International Code of Nomenclature for Algae, Fungi, and Plants. vol. 159 (Koeltz Botanical Books, 2018).
De Wint, F. C. et al. EntomoFun 1.0: A global database of entomopathogenic fungi and associations with their hosts. 513216 bytes Dryad10.5061/DRYAD.1ZCRJDG17 (2024).
Xiao, Y.-P. et al. Polycephalomycetaceae, a new family of clavicipitoid fungi segregates from Ophiocordycipitaceae. Fungal Divers.120, 1–76 (2023).
Cannon, P. F. & Kirk, P. M. The philosophy and practicalities of amalgamating anamorph and teleomorph concepts. Stud. Mycol. 19–26 (2000).
Hawksworth, D. L. et al. The Amsterdam Declaration on Fungal Nomenclature. IMA Fungus2, 105–111 (2011). PubMed PMC
Robert, V. et al. MycoBank gearing up for new horizons. IMA Fungus4, 371–379 (2013). PubMed PMC
Index Fungorum https://www.indexfungorum.org/Names/Names.asp (2024).
Sharkey, M. J. Phylogeny and Classification of Hymenoptera*. Zootaxa1668 (2007).
Chamberlain, S. et al. R package ‘taxize’ (2020).
Registry-Migration.Gbif.Org. GBIF Backbone Taxonomy. GBIF Secretariat 10.15468/39OMEI (2023).
Schoch, C. L. et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database2020, baaa062 (2020). PubMed PMC
Sung, G.-H. et al. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud. Mycol.57, 5–59 (2007). PubMed PMC
Kobayasi, Y. The genus Cordyceps and its allies. Sci. Rep. Tokyo Bunrika DaigakuSection B, 53–260 (1941).
Rose, E. A. F., Harris, R. J. & Glare, T. R. Possible pathogens of social wasps (Hymenoptera: Vespidae) and their potential as biological control agents. N. Z. J. Zool.26, 179–190 (1999).
Hywel-Jones, N. Cordyceps sphecocephala and a Hymenostilbe sp. infecting wasps. Mycol. Res. 154–158 (1995).
Petch, T. Notes on entomogenous fugi. Trans. Br. Mycol. Soc. 49–75 (1933).
Antwiki http://Antwiki.org (2024).
R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing (2022).
Ondov, B. D., Bergman, N. H. & Phillippy, A. M. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics12 (2011). PubMed PMC