Introducing a global database of entomopathogenic fungi and their host associations

. 2024 Dec 21 ; 11 (1) : 1418. [epub] 20241221

Jazyk angličtina Země Anglie, Velká Británie Médium electronic

Typ dokumentu dataset, časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid39709508

Grantová podpora
2023 Student Mobility Grant to F.C.D.W. EC | Erasmus+
Senior Postdoctoral Fellowship 1206024N to D.H. Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders)

Odkazy

PubMed 39709508
PubMed Central PMC11663221
DOI 10.1038/s41597-024-04103-4
PII: 10.1038/s41597-024-04103-4
Knihovny.cz E-zdroje

Pathogens significantly influence natural and agricultural ecosystems, playing a crucial role in the regulation of species populations and maintaining biodiversity. Entomopathogenic fungi (EF), particularly within the Hypocreales order, exemplify understudied pathogens that infect insects and other arthropods globally. Despite their ecological importance, comprehensive data on EF host specificity and geographical distribution are lacking. To address this, we present EntomoFun 1.0, an open-access database centralizing global records of EF-insect associations in Hypocreales. This database includes 1,791 records detailing EF species, insect host taxa, countries of occurrence, life stages of hosts, and information sources. EntomoFun 1.0 is constructed based on 600 literature sources, as well as herbarium specimens of the Royal Botanical Gardens, Kew. This database is intended to test hypotheses, identify knowledge gaps, and stimulate future research. Contents of the EntomoFun 1.0 database are visualized with a global map, taxonomic chart, bipartite community network, and graphs.

Zobrazit více v PubMed

Singh, B. K. et al. Climate change impacts on plant pathogens, food security and paths forward. Nat. Rev. Microbiol.21, 640–656 (2023). PubMed PMC

Lyles, A. M. & Dobson, A. P. Infectious Disease and Intensive Management: Population Dynamics, Threatened Hosts, and Their Parasites. J. Zoo Wildl. Med.24, 315–326 (1993).

Woolhouse, M. E. J., Taylor, L. H. & Haydon, D. T. Population Biology of Multihost Pathogens. Science292, 1109–1112 (2001). PubMed

Dwyer, G. Density Dependence and Spatial Structure in the Dynamics of Insect Pathogens. Am. Nat.143, 533–562 (1994).

Liu, W.-C., Bonsall, M. B. & Godfray, H. C. J. The form of host density-dependence and the likelihood of host–pathogen cycles in forest-insect systems. Theor. Popul. Biol.72, 86–95 (2007). PubMed

Greer, A. L., Briggs, C. J. & Collins, J. P. Testing a key assumption of host‐pathogen theory: density and disease transmission. Oikos117, 1667–1673 (2008).

Burdon, J. J. & Thrall, P. H. Pathogen evolution across the agro‐ecological interface: implications for disease management. Evol. Appl.1, 57–65 (2008). PubMed PMC

Hortal, J. et al. Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity. Annu. Rev. Ecol. Evol. Syst.46, 523–549 (2015).

Araújo, J. P. M. & Hughes, D. P. Diversity of Entomopathogenic Fungi: Which Groups Conquered the Insect Body? in Advances in Genetics vol. 94 1–39 (Elsevier, 2016). PubMed

Kaishian, P. et al. Definitions of parasites and pathogens through time. Preprint at 10.22541/au.165712662.22738369/v2 (2024).

Mora, M. A. E., Castilho, A. M. C. & Fraga, M. E. Classification and infection mechanism of entomopathogenic fungi. Arq. Inst. Biológico84 (2018).

Andersen, S. B. et al. The Life of a Dead Ant: The Expression of an Adaptive Extended Phenotype. Am. Nat.174, 424–433 (2009). PubMed

De Bekker, C., Beckerson, W. C. & Elya, C. Mechanisms behind the Madness: How Do Zombie-Making Fungal Entomopathogens Affect Host Behavior To Increase Transmission? mBio12, e01872–21 (2021). PubMed PMC

Rosenberg, Y. et al. The global biomass and number of terrestrial arthropods. Sci. Adv.9, eabq4049 (2023). PubMed PMC

Stork, N. E. How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth? Annu. Rev. Entomol.63, 31–45 (2018). PubMed

St. Leger, R. J. Insects and their pathogens in a changing climate. J. Invertebr. Pathol.184, 107644 (2021). PubMed

Fournier, A., Penone, C., Pennino, M. G. & Courchamp, F. Predicting future invaders and future invasions. Proc. Natl. Acad. Sci.116, 7905–7910 (2019). PubMed PMC

Timms, R. & Read, A. F. What makes a specialist special? Trends Ecol. Evol.14, 333–334 (1999). PubMed

Meyling, N. V. & Hajek, A. E. Principles from community and metapopulation ecology: application to fungal entomopathogens. BioControl55, 39–54 (2010).

Tylianakis, J. M., Laliberté, E., Nielsen, A. & Bascompte, J. Conservation of species interaction networks. Biol. Conserv.143, 2270–2279 (2010).

Hajek, A. E., Junior, I. D. & Butler, L. Entomopathogenic Fungi as Classical Biological Control Agents. in Environmental Impacts of Microbial Insecticides (eds. Hokkanen, H. M. T. & Hajek, A. E.) 15–34, 10.1007/978-94-017-1441-9_2 (Springer Netherlands, Dordrecht, 2003).

Evans, H. C. Entomogenous fungi in tropical forest ecosystems: an appraisal. Ecol. Entomol.7, 47–60 (1982).

Quandt, C. A. & Haelewaters, D. Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi. in Encyclopedia of Mycology 284–294, 10.1016/B978-0-12-819990-9.00052-4 (Elsevier, 2021).

Haelewaters, D. et al. Biological knowledge shortfalls impede conservation efforts in poorly studied taxa—A case study of Laboulbeniomycetes. J. Biogeogr.51, 29–39 (2024).

Reichman, O. J., Jones, M. B. & Schildhauer, M. P. Challenges and Opportunities of Open Data in Ecology. Science331, 703–705 (2011). PubMed

Dorey, J. B. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci. Data10, 747 (2023). PubMed PMC

Wilkinson, M. D. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data3, 160018 (2016). PubMed PMC

International Code of Nomenclature for Algae, Fungi, and Plants. vol. 159 (Koeltz Botanical Books, 2018).

De Wint, F. C. et al. EntomoFun 1.0: A global database of entomopathogenic fungi and associations with their hosts. 513216 bytes Dryad10.5061/DRYAD.1ZCRJDG17 (2024).

Xiao, Y.-P. et al. Polycephalomycetaceae, a new family of clavicipitoid fungi segregates from Ophiocordycipitaceae. Fungal Divers.120, 1–76 (2023).

Cannon, P. F. & Kirk, P. M. The philosophy and practicalities of amalgamating anamorph and teleomorph concepts. Stud. Mycol. 19–26 (2000).

Hawksworth, D. L. et al. The Amsterdam Declaration on Fungal Nomenclature. IMA Fungus2, 105–111 (2011). PubMed PMC

Robert, V. et al. MycoBank gearing up for new horizons. IMA Fungus4, 371–379 (2013). PubMed PMC

Index Fungorum https://www.indexfungorum.org/Names/Names.asp (2024).

Sharkey, M. J. Phylogeny and Classification of Hymenoptera*. Zootaxa1668 (2007).

Chamberlain, S. et al. R package ‘taxize’ (2020).

Registry-Migration.Gbif.Org. GBIF Backbone Taxonomy. GBIF Secretariat 10.15468/39OMEI (2023).

Schoch, C. L. et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database2020, baaa062 (2020). PubMed PMC

Sung, G.-H. et al. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud. Mycol.57, 5–59 (2007). PubMed PMC

Kobayasi, Y. The genus Cordyceps and its allies. Sci. Rep. Tokyo Bunrika DaigakuSection B, 53–260 (1941).

Rose, E. A. F., Harris, R. J. & Glare, T. R. Possible pathogens of social wasps (Hymenoptera: Vespidae) and their potential as biological control agents. N. Z. J. Zool.26, 179–190 (1999).

Hywel-Jones, N. Cordyceps sphecocephala and a Hymenostilbe sp. infecting wasps. Mycol. Res. 154–158 (1995).

Petch, T. Notes on entomogenous fugi. Trans. Br. Mycol. Soc. 49–75 (1933).

Antwiki http://Antwiki.org (2024).

R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing (2022).

Ondov, B. D., Bergman, N. H. & Phillippy, A. M. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics12 (2011). PubMed PMC

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