VegVault dataset: linking global paleo-, and neo-vegetation data with functional traits and abiotic drivers
Jazyk angličtina Země Velká Británie, Anglie Médium electronic
Typ dokumentu časopisecké články, dataset
Grantová podpora
GN23-06386I
Grantová Agentura České Republiky (Grant Agency of the Czech Republic)
UNCE/24/SCI/006
Univerzita Karlova v Praze (Charles University)
TMS2022STG03
Universitetet i Bergen (University of Bergen)
PubMed
41350530
PubMed Central
PMC12680632
DOI
10.1038/s41597-025-06176-1
PII: 10.1038/s41597-025-06176-1
Knihovny.cz E-zdroje
- MeSH
- biodiverzita * MeSH
- ekosystém * MeSH
- faktografické databáze * MeSH
- klimatické změny * MeSH
- rostliny * MeSH
- Publikační typ
- časopisecké články MeSH
- dataset MeSH
Understanding the dynamics and persistence of biodiversity patterns over short (contemporary) and long (thousands of years) time scales is crucial for predicting ecosystem changes under global climate and land-use changes. A key challenge is integrating currently scattered ecological data to assess complex vegetation dynamics over time. Here, we present VegVault, an interdisciplinary SQLite database that uniquely integrates paleo- and neo-ecological plot-based vegetation data on a global and millennial scale, directly linking them with functional traits, soil, and climate information. VegVault currently comprises data from BIEN, sPlotOpen, TRY, Neotoma, CHELSA, and WoSIS, providing a comprehensive and ready-to-use resource for researchers across various fields to address questions about past and contemporary biodiversity patterns and their abiotic drivers. To further support the usability of the data, VegVault is complemented by the {vaultkeepr} R package, enabling streamlined data access, extraction, and manipulation. This study introduces the structure, content, and diverse applications of VegVault, emphasizing its potential role in advancing ecological research to improve predictions of biodiversity responses to global climate change.
Bjerknes Centre for Climate Research Bergen Norway
Center for Theoretical Study Charles University Jilská 1 CZ 11000 Prague Czech Republic
Department of Biological Sciences University of Bergen PO Box 7803 N 5020 Bergen Norway
Department of Botany Faculty of Science Charles University Benátská 2 CZ 12801 Prague Czech Republic
Department of Ecology Faculty of Science Charles University Viničná 7 CZ 12800 Prague Czech Republic
Zobrazit více v PubMed
Nieto-Lugilde, D. DOI
Reitalu, T., Kuneš, P. & Giesecke, T. Closing the gap between plant ecology and Quaternary palaeoecology. PubMed DOI PMC
GBIF.org. GBIF Home Page. https://www.gbif.org (2024).
Bruelheide, H. DOI
Botanical Information and Ecology Network (BIEN). BIEN: Botanical Information and Ecology Network. http://bien.nceas.ucsb.edu/bien/ (n.d.).
Williams, J. W. DOI
Fick, S. E. & Hijmans, R. J. WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. DOI
Schipper, E. L. F., Dubash, N. K. & Mulugetta, Y. Climate change research and the search for solutions: rethinking interdisciplinarity. PubMed DOI PMC
Intergovernmental Panel On Climate Change.
Smith, J. DOI
Weigelt, P., König, C. & Kreft, H. GIFT – A Global Inventory of Floras and Traits for macroecology and biogeography. DOI
Sabatini, F. M. DOI
Flantua, S. G. A. DOI
Batjes, N. H., Calisto, L. & de Sousa, L. M. Providing quality-assessed and standardised soil data to support global mapping and modelling (WoSIS snapshot 2023). DOI
Karger, D. N., Nobis, M. P., Normand, S., Graham, C. H. & Zimmermann, N. E. CHELSA-TraCE21k: Downscaled transient temperature and precipitation data since the last glacial maximum. https://www.envidat.ch/dataset/chelsa_trace (2020).
Karger, D. N., Nobis, M. P., Normand, S., Graham, C. H. & Zimmermann, N. E. CHELSA-TraCE21k – high-resolution (1km) downscaled transient temperature and precipitation data since the Last Glacial Maximum. DOI
GBIF Secretariat. GBIF Backbone Taxonomy (2023).
Mottl, O. taxospace - v0.0.0.9003, 10.5281/zenodo.14699491, https://github.com/OndrejMottl/taxospace (2024).
Mottl, O. vaultkeepr - v0.0.6, 10.5281/zenodo.14964737, https://github.com/OndrejMottl/vaultkeepr (2025).
Šímová, I., Ordonez, A. & Storch, D. The dynamics of the diversity–energy relationship during the last 21,000 years. DOI
Brown, K. A. DOI
Li, J. & Prentice, I. C. Global patterns of plant functional traits and their relationships to climate. PubMed DOI PMC
Shipley, B., Dilkina, B. & McGuire, J. MegaSDM: Modelling Species Ranges in The Past And Future. DOI
Pollock, L. J. DOI
Ordonez, A. & Gill, J. L. Unravelling the functional and phylogenetic dimensions of novel ecosystem assemblages. PubMed DOI PMC
Wieczynski, D. J. PubMed DOI PMC
Zurell, D., Fritz, S. A., Rönnfeldt, A. & Steinbauer, M. J. Predicting extinctions with species distribution models. PubMed DOI PMC
Chacon, S. & Straub, B.
Haslett, J. & Parnell, A. A Simple Monotone Process with Application to Radiocarbon-Dated Depth Chronologies. DOI
Maitner, B. S. DOI
Sabatini, F. M., Lenoir, J., Bruelheide, H. & sPlot Consortium. sPlotOpen – An environmentally-balanced, open-access, global dataset of vegetation plots. iDiv Data Repository, 10.25829/idiv.3474-bb7k72 (2021).
Jentsch, helge, Weidinger, J. & Bobrowski, M. ClimDatDownloadR: Downloads Climate Data from Chelsa and WorldClim, 10.5281/zenodo.7924343, https://github.com/HelgeJentsch/ClimDatDownloadR (2025).
Hijmans, R. J.
Thuiller, W. On the importance of edaphic variables to predict plant species distributions – limits and prospects. PubMed DOI PMC
Zuquim, G., Costa, F. R. C., Tuomisto, H., Moulatlet, G. M. & Figueiredo, F. O. G. The importance of soils in predicting the future of plant habitat suitability in a tropical forest. DOI
Velazco, S. J. E., Galvão, F., Villalobos, F. & Júnior, P. D. M. Using worldwide edaphic data to model plant species niches: An assessment at a continental extent. PubMed DOI PMC
Global Names Architecture. Global Names Resolver. https://resolver.globalnames.org/.
CESNET. National Repository. https://data.narodni-repozitar.cz/ (2024).
Keil, P. DOI
Augustine, S. P., Bailey-Marren, I., Charton, K. T., Kiel, N. G. & Peyton, M. S. Improper data practices erode the quality of global ecological databases and impede the progress of ecological research. PubMed DOI
R Core Team.