Antibiotic Resistance in Klebsiella pneumoniae and Related Enterobacterales: Molecular Mechanisms, Mobile Elements, and Therapeutic Challenges

. 2026 Jan 01 ; 15 (1) : . [epub] 20260101

Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic

Typ dokumentu časopisecké články, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid41594074

Grantová podpora
LX22NPO5103 Ministry of Education, Youth and Sports of the Czech Republic (MŠMT)
IGA_LF_2025_022 Palacký University Olomouc

Drug-resistant Klebsiella pneumoniae and related Enterobacterales represent an escalating global public health threat, increasingly limiting therapeutic options in both healthcare- and community-associated infections. This review summarizes how resistance in K. pneumoniae emerges from the synergy of intrinsic barriers and acquired determinants. Key molecular mechanisms include reduced permeability via porin remodeling (notably OmpK35/OmpK36), multidrug efflux (e.g., AcrAB-TolC and OqxAB), and enzymatic drug inactivation driven by extended-spectrum beta-lactamases and carbapenemases (e.g., KPC, OXA-48-like enzymes, and metallo-beta-lactamases). We also highlight clinically meaningful pathways underlying polymyxin/colistin resistance, including mgrB inactivation and PhoPQ/PmrAB-mediated lipid A modification. In addition to stable genetic resistance, adaptive programs can shape transient tolerance and persistence, including stress responses that modulate gene expression under antibiotic and host-imposed pressures. The ability of these organisms to form biofilms, particularly on medical devices, further complicates treatment and eradication. Finally, we discuss therapeutic implications and current options and limitations-including novel beta-lactam/beta-lactamase inhibitor combinations and siderophore cephalosporins-and emphasize the importance of aligning therapy and surveillance with the underlying resistance mechanisms and circulating high-risk lineages.

Zobrazit více v PubMed

Podschun R., Ullmann U. Klebsiella spp. as nosocomial pathogens: Epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin. Microbiol. Rev. 1998;11:589–603. doi: 10.1128/CMR.11.4.589. PubMed DOI PMC

Wyres K.L., Lam M.M.C., Holt K.E. Population genomics of Klebsiella pneumoniae. Nat. Rev. Microbiol. 2020;18:344–359. doi: 10.1038/s41579-019-0315-1. PubMed DOI

Buffet A., Rocha E.P.C., Rendueles O. Nutrient conditions are primary drivers of bacterial capsule maintenance in Klebsiella. Proc. Biol. Sci. 2021;288:20202876. doi: 10.1098/rspb.2020.2876. PubMed DOI PMC

Huang X., Li X., An H., Wang J., Ding M., Wang L., Li L., Ji Q., Qu F., Wang H., et al. Capsule type defines the capability of Klebsiella pneumoniae in evading Kupffer cell capture in the liver. PLoS Pathog. 2022;18:e1010693. doi: 10.1371/journal.ppat.1010693. PubMed DOI PMC

Merino S., Altarriba M., Izquierdo L., Nogueras M.M., Regué M., Tomás J.M. Cloning and Sequencing of the Klebsiella pneumoniae O5wb Gene Cluster and Its Role in Pathogenesis. Infect. Immun. 2000;68:2435–2440. doi: 10.1128/IAI.68.5.2435-2440.2000. PubMed DOI PMC

Russo T.A., Marr C.M. Hypervirulent Klebsiella pneumoniae. Clin. Microbiol. Rev. 2019;32:e00001-19. doi: 10.1128/CMR.00001-19. PubMed DOI PMC

Lin X.C., Li C.L., Zhang S.Y., Yang X.F., Jiang M. The Global and Regional Prevalence of Hospital-Acquired Carbapenem-Resistant Klebsiella pneumoniae Infection: A Systematic Review and Meta-analysis. Open Forum Infect. Dis. 2024;11:ofad649. doi: 10.1093/ofid/ofad649. PubMed DOI PMC

Peabody M.A., Van Rossum T., Lo R., Brinkman F.S. Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities. BMC Bioinform. 2015;16:363. doi: 10.1186/s12859-015-0788-5. PubMed DOI PMC

Wyres K.L., Holt K.E. Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria. Curr. Opin. Microbiol. 2018;45:131–139. doi: 10.1016/j.mib.2018.04.004. PubMed DOI

Jones R.N. Microbial etiologies of hospital-acquired bacterial pneumonia and ventilator-associated bacterial pneumonia. Clin. Infect. Dis. 2010;51:S81–S87. doi: 10.1086/653053. PubMed DOI

Shon A.S., Bajwa R.P., Russo T.A. Hypervirulent (hypermucoviscous) Klebsiella pneumoniae: A new and dangerous breed. Virulence. 2013;4:107–118. doi: 10.4161/viru.22718. PubMed DOI PMC

Bialek-Davenet S., Criscuolo A., Ailloud F., Passet V., Jones L., Delannoy-Vieillard A.S., Garin B., Le Hello S., Arlet G., Nicolas-Chanoine M.H., et al. Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg. Infect. Dis. 2014;20:1812–1820. doi: 10.3201/eid2011.140206. PubMed DOI PMC

Schroll C., Barken K.B., Krogfelt K.A., Struve C. Role of type 1 and type 3 fimbriae in Klebsiella pneumoniae biofilm formation. BMC Microbiol. 2010;10:179. doi: 10.1186/1471-2180-10-179. PubMed DOI PMC

Stanley N.R., Lazazzera B.A. Environmental signals and regulatory pathways that influence biofilm formation. Mol. Microbiol. 2004;52:917–924. doi: 10.1111/j.1365-2958.2004.04036.x. PubMed DOI

Tsang K.K., Lam M.M.C., Wick R.R., Wyres K.L., Bachman M., Baker S., Barry K., Brisse S., Campino S., Chiaverini A., et al. Diversity, functional classification and genotyping of SHV beta-lactamases in Klebsiella pneumoniae. Microb. Genom. 2024;10:001294. doi: 10.1099/mgen.0.001294. PubMed DOI PMC

EUCAST [Internet]. Expected Resistant Phenotypes. Version 1.2. 2023. [(accessed on 3 September 2025)]. Available online: https://www.eucast.org/expert_rules_and_expected_phenotypes/expected_phenotypes.

Leverstein-van Hall M.A., Dierikx C.M., Cohen Stuart J., Voets G.M., van den Munckhof M.P., van Essen-Zandbergen A., Platteel T., Fluit A.C., van de Sande-Bruinsma N., Scharinga J., et al. Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. Clin. Microbiol. Infect. 2011;17:873–880. doi: 10.1111/j.1469-0691.2011.03497.x. PubMed DOI

Zdarska V., Kolar M., Mlynarcik P. Occurrence of beta-lactamases in bacteria. Infect. Genet. Evol. 2024;122:105610. doi: 10.1016/j.meegid.2024.105610. PubMed DOI

IDSA Guidance on the Treatment of Antimicrobial Resistant Gram-Negative Infections. 2024. [(accessed on 1 September 2025)]. Available online: https://www.idsociety.org/practice-guideline/amr-guidance/

Keam S.J. Cefepime/Enmetazobactam: First Approval. Drugs. 2024;84:737–744. doi: 10.1007/s40265-024-02035-2. PubMed DOI

FDA Drug Approval Package: AVYCAZ (Ceftazidime-Avibactam) [(accessed on 27 August 2025)]; Available online: https://www.accessdata.fda.gov/drugsatfda_docs/nda/2015/206494Orig1s000TOC.cfm.

EMA Zavicefta|European Medicines Agency. [(accessed on 27 August 2025)]. Available online: https://www.ema.europa.eu/en/medicines/human/EPAR/zavicefta.

Xu T.T., Guo Y.Q., Ji Y., Wang B.H., Zhou K. Epidemiology and Mechanisms of Ceftazidime-Avibactam Resistance in Gram-Negative Bacteria. Engineering. 2022;11:138–145. doi: 10.1016/j.eng.2020.11.004. DOI

Hillyer T., Shin W.S. Meropenem/Vaborbactam-A Mechanistic Review for Insight into Future Development of Combinational Therapies. Antibiotics. 2024;13:472. doi: 10.3390/antibiotics13060472. PubMed DOI PMC

Campanella T.A., Gallagher J.C. A Clinical Review and Critical Evaluation of Imipenem-Relebactam: Evidence to Date. Infect. Drug Resist. 2020;13:4297–4308. doi: 10.2147/IDR.S224228. PubMed DOI PMC

Ambler R.P. The structure of beta-lactamases. Philos. Trans. R. Soc. Lond. B Biol. Sci. 1980;289:321–331. doi: 10.1098/rstb.1980.0049. PubMed DOI

Bush K. Past and Present Perspectives on beta-Lactamases. Antimicrob. Agents Chemother. 2018;62:e01076-18. doi: 10.1128/AAC.01076-18. PubMed DOI PMC

Navon-Venezia S., Kondratyeva K., Carattoli A. Klebsiella pneumoniae: A major worldwide source and shuttle for antibiotic resistance. FEMS Microbiol. Rev. 2017;41:252–275. doi: 10.1093/femsre/fux013. PubMed DOI

Wang C.H., Yang D.Q., Wang Y.F., Ni W.T. Cefiderocol for the Treatment of Multidrug-Resistant Gram-Negative Bacteria: A Systematic Review of Currently Available Evidence. Front. Pharmacol. 2022;13:896971. doi: 10.3389/fphar.2022.896971. PubMed DOI PMC

Palombo M., Secci B., Bovo F., Gatti M., Ambretti S., Gaibani P. In Vitro Evaluation of Increasing Avibactam Concentrations on Ceftazidime Activity Against Ceftazidime/Avibactam-Susceptible and Resistant KPC-Producing Klebsiella pneumoniae Clinical Isolates. Antibiotics. 2023;12:1707. doi: 10.3390/antibiotics12121707. PubMed DOI PMC

Carattoli A., Arcari G., Bibbolino G., Sacco F., Tomolillo D., Di Lella F.M., Trancassini M., Faino L., Venditti M., Antonelli G., et al. Evolutionary Trajectories toward Ceftazidime-Avibactam Resistance in Klebsiella pneumoniae Clinical Isolates. Antimicrob. Agents Chemother. 2021;65:e0057421. doi: 10.1128/AAC.00574-21. PubMed DOI PMC

Hobson C.A., Pierrat G., Tenaillon O., Bonacorsi S., Bercot B., Jaouen E., Jacquier H., Birgy A. Klebsiella pneumoniae Carbapenemase Variants Resistant to Ceftazidime-Avibactam: An Evolutionary Overview. Antimicrob. Agents Chemother. 2022;66:00447-22. doi: 10.1128/aac.00447-22. PubMed DOI PMC

Kriz R., Spettel K., Pichler A., Schefberger K., Sanz-Codina M., Lötsch F., Harrison N., Willinger B., Zeitlinger M., Burgmann H., et al. In vitro resistance development gives insights into molecular resistance mechanisms against cefiderocol. J. Antibiot. 2024;77:757–767. doi: 10.1038/s41429-024-00762-y. PubMed DOI PMC

Polani R., De Francesco A., Tomolillo D., Artuso I., Equestre M., Trirocco R., Arcari G., Antonelli G., Villa L., Prosseda G., et al. Cefiderocol Resistance Conferred by Plasmid-Located Ferric Citrate Transport System in KPC-Producing Klebsiella pneumoniae. Emerg. Infect. Dis. 2025;31:123–134. doi: 10.3201/eid3101.241426. PubMed DOI PMC

Hackel M.A., Lomovskaya O., Dudley M.N., Karlowsky J.A., Sahm D.F. In Vitro Activity of Meropenem-Vaborbactam against Clinical Isolates of KPC-Positive Enterobacteriaceae. Antimicrob. Agents Chemother. 2018;62:e01904-17. doi: 10.1128/AAC.01904-17. PubMed DOI PMC

O’Donnell J.N., Lodise T.P. New Perspectives on Antimicrobial Agents: Imipenem-Relebactam. Antimicrob. Agents Chemother. 2022;66:e00256-22. doi: 10.1128/aac.00256-22. PubMed DOI PMC

New Antibiotic to Fight Infections Caused by Multidrug-Resistant Bacteria | European Medicines Agency n.d. [(accessed on 1 December 2025)]. Available online: https://www.ema.europa.eu/en/news/new-antibiotic-fight-infections-caused-multidrug-resistant-bacteria.

AbbVie FDA Approves EMBLAVEO™ (Aztreonam and Avibactam) for the Treatment of Adults with Complicated Intra-Abdominal Infections with Limited or No Treatment Options. [(accessed on 1 December 2025)]. Available online: https://news.abbvie.com/2025-02-07-U-S-FDA-Approves-EMBLAVEO-TM-aztreonam-and-avibactam-for-the-Treatment-of-Adults-With-Complicated-Intra-Abdominal-Infections-With-Limited-or-No-Treatment-Options.

Karaiskos I., Galani I., Daikos G.L., Giamarellou H. Breaking Through Resistance: A Comparative Review of New Beta-Lactamase Inhibitors (Avibactam, Vaborbactam, Relebactam) Against Multidrug-Resistant Superbugs. Antibiotics. 2025;14:528. doi: 10.3390/antibiotics14050528. PubMed DOI PMC

Exblifep European Medicines Agency (EMA) 2024. [(accessed on 1 December 2025)]. Available online: https://www.ema.europa.eu/en/medicines/human/EPAR/exblifep.

Bhowmick T., Canton R., Pea F., Quevedo J., Henriksen A.S., Timsit J.F., Kaye K.S. Cefepime-enmetazobactam: First approved cefepime-β-lactamase inhibitor combination for multi-drug resistant Enterobacterales. Future Microbiol. 2025;20:277–286. doi: 10.1080/17460913.2025.2468112. PubMed DOI PMC

Chris Dall FDA Rejects New Drug Application for Cefepime-Taniborbactam. Published Online. Feb 27, 2024. [(accessed on 1 December 2025)]. Available online: https://www.cidrap.umn.edu/antimicrobial-stewardship/fda-rejects-new-drug-application-cefepime-taniborbactam.

Katsarou A., Stathopoulos P., Tzvetanova I.D., Asimotou C.M., Falagas M.E. β-Lactam/β-Lactamase Inhibitor Combination Antibiotics Under Development. Pathogens. 2025;14:168. doi: 10.3390/pathogens14020168. PubMed DOI PMC

Darby E.M., Trampari E., Siasat P., Gaya M.S., Alav I., Webber M.A., Blair J.M.A. Molecular mechanisms of antibiotic resistance revisited. Nat. Rev. Microbiol. 2023;21:280–295. doi: 10.1038/s41579-022-00820-y. PubMed DOI

Hamzaoui Z., Ocampo-Sosa A., Fernandez Martinez M., Landolsi S., Ferjani S., Maamar E., Saidani M., Slim A., Martinez-Martinez L., Boutiba-Ben Boubaker I. Role of association of OmpK35 and OmpK36 alteration and blaESBL and/or blaAmpC genes in conferring carbapenem resistance among non-carbapenemase-producing Klebsiella pneumoniae. Int. J. Antimicrob. Agents. 2018;52:898–905. doi: 10.1016/j.ijantimicag.2018.03.020. PubMed DOI

Holt K.E., Wertheim H., Zadoks R.N., Baker S., Whitehouse C.A., Dance D., Jenney A., Connor T.R., Hsu L.Y., Severin J., et al. Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proc. Natl. Acad. Sci. USA. 2015;112:E3574–E3581. doi: 10.1073/pnas.1501049112. PubMed DOI PMC

Chaves J., Ladona M.G., Segura C., Coira A., Reig R., Ampurdanes C. SHV-1 beta-lactamase is mainly a chromosomally encoded species-specific enzyme in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2001;45:2856–2861. doi: 10.1128/AAC.45.10.2856-2861.2001. PubMed DOI PMC

Nordmann P., Poirel L., Walsh T.R., Livermore D.M. The emerging NDM carbapenemases. Trends Microbiol. 2011;19:588–595. doi: 10.1016/j.tim.2011.09.005. PubMed DOI

Nordmann P., Cuzon G., Naas T. The real threat of Klebsiella pneumoniae carbapenemase-producing bacteria. Lancet Infect. Dis. 2009;9:228–236. doi: 10.1016/S1473-3099(09)70054-4. PubMed DOI

Liu Y.Y., Wang Y., Walsh T.R., Yi L.X., Zhang R., Spencer J., Doi Y., Tian G., Dong B., Huang X., et al. Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: A microbiological and molecular biological study. Lancet Infect. Dis. 2016;16:161–168. doi: 10.1016/S1473-3099(15)00424-7. PubMed DOI

Shankar P.R. Book review: Tackling drug-resistant infections globally. Arch. Pharm. Pract. 2016;7:110–111. doi: 10.4103/2045-080X.186181. DOI

Woodford N., Turton J.F., Livermore D.M. Multiresistant Gram-negative bacteria: The role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiol. Rev. 2011;35:736–755. doi: 10.1111/j.1574-6976.2011.00268.x. PubMed DOI

Mathers A.J., Peirano G., Pitout J.D. The role of epidemic resistance plasmids and international high-risk clones in the spread of multidrug-resistant Enterobacteriaceae. Clin. Microbiol. Rev. 2015;28:565–591. doi: 10.1128/CMR.00116-14. PubMed DOI PMC

Pitout J.D., Nordmann P., Poirel L. Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance. Antimicrob. Agents Chemother. 2015;59:5873–5884. doi: 10.1128/AAC.01019-15. PubMed DOI PMC

Bowers J.R., Kitchel B., Driebe E.M., MacCannell D.R., Roe C., Lemmer D., de Man T., Rasheed J.K., Engelthaler D.M., Keim P., et al. Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic. PLoS ONE. 2015;10:e0133727. doi: 10.1371/journal.pone.0133727. PubMed DOI PMC

Bonnin R.A., Jousset A.B., Chiarelli A., Emeraud C., Glaser P., Naas T., Dortet L. Emergence of New Non–Clonal Group 258 High-Risk Clones among Klebsiella pneumoniae Carbapenemase–Producing K. pneumoniae Isolates, France. Emerg. Infect. Dis. 2020;26:1212–1220. doi: 10.3201/eid2606.191517. PubMed DOI PMC

Shaidullina E.R., Schwabe M., Rohde T., Shapovalova V.V., Dyachkova M.S., Matsvay A.D., Savochkina Y.A., Shelenkov A.A., Mikhaylova Y.V., Sydow K., et al. Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395. Genome Med. 2023;15:9. doi: 10.1186/s13073-023-01159-6. PubMed DOI PMC

Turton J., Davies F., Turton J., Perry C., Payne Z., Pike R. Hybrid Resistance and Virulence Plasmids in “High-Risk” Clones of Klebsiella pneumoniae, Including Those Carrying blaNDM-5. Microorganisms. 2019;7:326. doi: 10.3390/microorganisms7090326. PubMed DOI PMC

D’Achille G., Cotoloni G., Nunzi I., Brescini L., Fioriti S., Armiento M., Pocognoli A., Giovanetti E., Paoletti C., Menzo S., et al. Diffusion of OXA-48- and NDM-5-producing Klebsiella pneumoniae ST383 clone in Central Italy. J. Antimicrob. Chemother. 2025:dkaf397. doi: 10.1093/jac/dkaf397. PubMed DOI

Shirazi A.S., Kiani N., Aghamohammad S., Shafiei M., Darazam I.A., Darabi S., Badmasti F. Clonal dissemination of carbapenem-resistant Klebsiella pneumoniae in outpatients as fecal-carriages: Predominance of the high-risk clone ST231. BMC Infect. Dis. 2025;25:1235. doi: 10.1186/s12879-025-11670-3. PubMed DOI PMC

Dong X., Xiang Y., Li Y., Zhang Y. Lineage-specific evolution and resistance-virulence divergence in Klebsiella pneumoniae ST268: A global population genomic analysis. Antimicrob. Agents Chemother. 2025;69:e0070325. doi: 10.1128/aac.00703-25. PubMed DOI PMC

Stanton T.D., Wyres K.L. What defines hypervirulent Klebsiella pneumoniae? Ebiomedicine. 2024;108:105331. doi: 10.1016/j.ebiom.2024.105331. PubMed DOI PMC

Arcari G., Carattoli A. Global spread and evolutionary convergence of multidrug-resistant and hypervirulent Klebsiella pneumoniae high-risk clones. Pathog. Glob. Health. 2023;117:328–341. doi: 10.1080/20477724.2022.2121362. PubMed DOI PMC

Nicas T.I., Hancock R.E. Pseudomonas aeruginosa outer membrane permeability: Isolation of a porin protein F-deficient mutant. J. Bacteriol. 1983;153:281–285. doi: 10.1128/jb.153.1.281-285.1983. PubMed DOI PMC

Nikaido H. Molecular basis of bacterial outer membrane permeability revisited. Microbiol. Mol. Biol. Rev. MMBR. 2003;67:593–656. doi: 10.1128/MMBR.67.4.593-656.2003. PubMed DOI PMC

Schulz G.E. The structure of bacterial outer membrane proteins. Biochim. Biophys. Acta (BBA)–Biomembr. 2002;1565:308–317. doi: 10.1016/S0005-2736(02)00577-1. PubMed DOI

Needham B.D., Trent M.S. Fortifying the barrier: The impact of lipid A remodelling on bacterial pathogenesis. Nat. Rev. Microbiol. 2013;11:467–481. doi: 10.1038/nrmicro3047. PubMed DOI PMC

Mlynarcik P., Kolar M. Molecular mechanisms of polymyxin resistance and detection of mcr genes. Biomed. Pap. Med. Fac. Univ. Palacky. Olomouc Czech Repub. 2019;163:28–38. doi: 10.5507/bp.2018.070. PubMed DOI

Sun L., Zhang Y., Cai T., Li X., Li N., Xie Z., Yang F., You X. CrrAB regulates PagP-mediated glycerophosphoglycerol palmitoylation in the outer membrane of Klebsiella pneumoniae. J. Lipid Res. 2022;63:100251. doi: 10.1016/j.jlr.2022.100251. PubMed DOI PMC

Hsieh P.F., Liu J.Y., Pan Y.J., Wu M.C., Lin T.L., Huang Y.T., Wang J.T. Klebsiella pneumoniae peptidoglycan-associated lipoprotein and murein lipoprotein contribute to serum resistance, anti-phagocytosis and proinflammatory cytokine stimulation. J. Infect. Dis. 2013;208:1580–1589. doi: 10.1093/infdis/jit384. PubMed DOI

Llobet E., March C., Gimenez P., Bengoechea J.A. Klebsiella pneumoniae OmpA confers resistance to antimicrobial peptides. Antimicrob. Agents Chemother. 2009;53:298–302. doi: 10.1128/AAC.00657-08. PubMed DOI PMC

Garcia-Sureda L., Juan C., Domenech-Sanchez A., Alberti S. Role of Klebsiella pneumoniae LamB Porin in antimicrobial resistance. Antimicrob. Agents Chemother. 2011;55:1803–1805. doi: 10.1128/AAC.01441-10. PubMed DOI PMC

Kaczmarek F.M., Dib-Hajj F., Shang W.C., Gootz T.D. High-level carbapenem resistance in a Klebsiella pneumoniae clinical isolate is due to the combination of blaACT-1 β-lactamase production, porin OmpK35/36 insertional inactivation, and down-regulation of the phosphate transport porin PhoE. Antimicrob. Agents Chemother. 2006;50:3396–3406. doi: 10.1128/AAC.00285-06. PubMed DOI PMC

Guo Y., Liu N., Lin Z., Ba X., Zhuo C., Li F., Wang J., Li Y., Yao L., Liu B., et al. Mutations in porin LamB contribute to ceftazidime-avibactam resistance in KPC-producing Klebsiella pneumoniae. Emerg. Microbes Infect. 2021;10:2042–2051. doi: 10.1080/22221751.2021.1984182. PubMed DOI PMC

Sugawara E., Kojima S., Nikaido H. Klebsiella pneumoniae Major Porins OmpK35 and OmpK36 Allow More Efficient Diffusion of beta-Lactams than Their Escherichia coli Homologs OmpF and OmpC. J. Bacteriol. 2016;198:3200–3208. doi: 10.1128/JB.00590-16. PubMed DOI PMC

Nikaido H., Rosenberg E.Y. Porin channels in Escherichia coli: Studies with liposomes reconstituted from purified proteins. J. Bacteriol. 1983;153:241–252. doi: 10.1128/jb.153.1.241-252.1983. PubMed DOI PMC

Hernandez-Alles S., Alberti S., Alvarez D., Domenech-Sanchez A., Martinez-Martinez L., Gil J., Tomas J.M., Benedi V.J. Porin expression in clinical isolates of Klebsiella pneumoniae. Microbiology. 1999;145:673–679. doi: 10.1099/13500872-145-3-673. PubMed DOI

Weigel L.M., Steward C.D., Tenover F.C. gyrA mutations associated with fluoroquinolone resistance in eight species of Enterobacteriaceae. Antimicrob. Agents Chemother. 1998;42:2661–2667. doi: 10.1128/AAC.42.10.2661. PubMed DOI PMC

Ardanuy C., Linares J., Dominguez M.A., Hernandez-Alles S., Benedi V.J., Martinez-Martinez L. Outer membrane profiles of clonally related Klebsiella pneumoniae isolates from clinical samples and activities of cephalosporins and carbapenems. Antimicrob. Agents Chemother. 1998;42:1636–1640. doi: 10.1128/AAC.42.7.1636. PubMed DOI PMC

Bradford P.A., Urban C., Mariano N., Projan S.J., Rahal J.J., Bush K. Imipenem resistance in Klebsiella pneumoniae is associated with the combination of ACT-1, a plasmid-mediated AmpC beta-lactamase, and the loss of an outer membrane protein. Antimicrob. Agents Chemother. 1997;41:563–569. doi: 10.1128/AAC.41.3.563. PubMed DOI PMC

Martinez-Martinez L., Hernandez-Alles S., Alberti S., Tomas J.M., Benedi V.J., Jacoby G.A. In vivo selection of porin-deficient mutants of Klebsiella pneumoniae with increased resistance to cefoxitin and expanded-spectrum-cephalosporins. Antimicrob. Agents Chemother. 1996;40:342–348. doi: 10.1128/AAC.40.2.342. PubMed DOI PMC

Martinez-Martinez L., Pascual A., Hernandez-Alles S., Alvarez-Diaz D., Suarez A.I., Tran J., Benedi V.J., Jacoby G.A. Roles of beta-lactamases and porins in activities of carbapenems and cephalosporins against Klebsiella pneumoniae. Antimicrob. Agents Chemother. 1999;43:1669–1673. doi: 10.1128/AAC.43.7.1669. PubMed DOI PMC

Wong J.L.C., David S., Sanchez-Garrido J., Woo J.Z., Low W.W., Morecchiato F., Giani T., Rossolini G.M., Beis K., Brett S.J., et al. Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure. Proc. Natl. Acad. Sci. USA. 2022;119:e2203593119. doi: 10.1073/pnas.2203593119. PubMed DOI PMC

Bialek-Davenet S., Mayer N., Vergalli J., Duprilot M., Brisse S., Pages J.M., Nicolas-Chanoine M.H. In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification. Sci. Rep. 2017;7:6722. doi: 10.1038/s41598-017-06503-6. PubMed DOI PMC

Ramos P.I., Picao R.C., Almeida L.G., Lima N.C., Girardello R., Vivan A.C., Xavier D.E., Barcellos F.G., Pelisson M., Vespero E.C., et al. Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. BMC Genom. 2014;15:54. doi: 10.1186/1471-2164-15-54. PubMed DOI PMC

Srinivasan V.B., Venkataramaiah M., Mondal A., Vaidyanathan V., Govil T., Rajamohan G. Functional characterization of a novel outer membrane porin KpnO, regulated by PhoBR two-component system in Klebsiella pneumoniae NTUH-K2044. PLoS ONE. 2012;7:e41505. doi: 10.1371/journal.pone.0041505. PubMed DOI PMC

Garcia-Sureda L., Domenech-Sanchez A., Barbier M., Juan C., Gasco J., Alberti S. OmpK26, a novel porin associated with carbapenem resistance in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2011;55:4742–4747. doi: 10.1128/AAC.00309-11. PubMed DOI PMC

Castanheira M., Deshpande L.M., Mills J.C., Jones R.N., Soave R., Jenkins S.G., Schuetz A.N. Klebsiella pneumoniae Isolate from a New York City Hospital Belonging to Sequence Type 258 and Carrying blaKPC-2 and blaVIM-4. Antimicrob. Agents Chemother. 2016;60:1924–1927. doi: 10.1128/AAC.01844-15. PubMed DOI PMC

Domenech-Sanchez A., Hernandez-Alles S., Martinez-Martinez L., Benedi V.J., Alberti S. Identification and characterization of a new porin gene of Klebsiella pneumoniae: Its role in beta-lactam antibiotic resistance. J. Bacteriol. 1999;181:2726–2732. doi: 10.1128/JB.181.9.2726-2732.1999. PubMed DOI PMC

Düzgün A.Ö. From Turkey: First Report of KPC-3-and CTX-M-27-Producing Multidrug-Resistant Klebsiella pneumoniae ST147 Clone Carrying OmpK36 and Ompk37 Porin Mutations. Microb. Drug Resist. 2021;27:1265–1270. doi: 10.1089/mdr.2020.0274. PubMed DOI

Nazarov P.A. MDR Pumps as Crossroads of Resistance: Antibiotics and Bacteriophages. Antibiotics. 2022;11:734. doi: 10.3390/antibiotics11060734. PubMed DOI PMC

McNeil H.E., Alav I., Torres R.C., Rossiter A.E., Laycock E., Legood S., Kaur I., Davies M., Wand M., Webber M.A., et al. Identification of binding residues between periplasmic adapter protein (PAP) and RND efflux pumps explains PAP-pump promiscuity and roles in antimicrobial resistance. PLoS Pathog. 2019;15:e1008101. doi: 10.1371/journal.ppat.1008101. PubMed DOI PMC

Ricci V., Tzakas P., Buckley A., Piddock L.J. Ciprofloxacin-resistant Salmonella enterica serovar Typhimurium strains are difficult to select in the absence of AcrB and TolC. Antimicrob. Agents Chemother. 2006;50:38–42. doi: 10.1128/AAC.50.1.38-42.2006. PubMed DOI PMC

Papkou A., Hedge J., Kapel N., Young B., MacLean R.C. Efflux pump activity potentiates the evolution of antibiotic resistance across S. aureus isolates. Nat. Commun. 2020;11:3970. doi: 10.1038/s41467-020-17735-y. PubMed DOI PMC

Saw H.T., Webber M.A., Mushtaq S., Woodford N., Piddock L.J. Inactivation or inhibition of AcrAB-TolC increases resistance of carbapenemase-producing Enterobacteriaceae to carbapenems. J. Antimicrob. Chemother. 2016;71:1510–1519. doi: 10.1093/jac/dkw028. PubMed DOI

Adewoye L., Sutherland A., Srikumar R., Poole K. The mexR repressor of the mexAB-oprM multidrug efflux operon in Pseudomonas aeruginosa: Characterization of mutations compromising activity. J. Bacteriol. 2002;184:4308–4312. doi: 10.1128/JB.184.15.4308-4312.2002. PubMed DOI PMC

Olivares J., Alvarez-Ortega C., Linares J.F., Rojo F., Kohler T., Martinez J.L. Overproduction of the multidrug efflux pump MexEF-OprN does not impair Pseudomonas aeruginosa fitness in competition tests, but produces specific changes in bacterial regulatory networks. Environ. Microbiol. 2012;14:1968–1981. doi: 10.1111/j.1462-2920.2012.02727.x. PubMed DOI

Sanchez P., Linares J.F., Ruiz-Diez B., Campanario E., Navas A., Baquero F., Martinez J.L. Fitness of in vitro selected Pseudomonas aeruginosa nalB and nfxB multidrug resistant mutants. J. Antimicrob. Chemother. 2002;50:657–664. doi: 10.1093/jac/dkf185. PubMed DOI

Poole K. Efflux-mediated resistance to fluoroquinolones in gram-positive bacteria and the mycobacteria. Antimicrob. Agents Chemother. 2000;44:2595–2599. doi: 10.1128/AAC.44.10.2595-2599.2000. PubMed DOI PMC

Kuroda T., Tsuchiya T. Multidrug efflux transporters in the MATE family. Biochim. Biophys. Acta (BBA)-Proteins Proteom. 2009;1794:763–768. doi: 10.1016/j.bbapap.2008.11.012. PubMed DOI

Ogawa W., Minato Y., Dodan H., Onishi M., Tsuchiya T., Kuroda T. Characterization of MATE-type multidrug efflux pumps from Klebsiella pneumoniae MGH78578. PLoS ONE. 2015;10:e0121619. doi: 10.1371/journal.pone.0121619. PubMed DOI PMC

Padilla E., Llobet E., Domenech-Sanchez A., Martinez-Martinez L., Bengoechea J.A., Alberti S. Klebsiella pneumoniae AcrAB efflux pump contributes to antimicrobial resistance and virulence. Antimicrob. Agents Chemother. 2010;54:177–183. doi: 10.1128/AAC.00715-09. PubMed DOI PMC

Xu Q., Jiang J., Zhu Z., Xu T., Sheng Z.K., Ye M., Xu X., Wang M. Efflux pumps AcrAB and OqxAB contribute to nitrofurantoin resistance in an uropathogenic Klebsiella pneumoniae isolate. Int. J. Antimicrob. Agents. 2019;54:223–227. doi: 10.1016/j.ijantimicag.2019.06.004. PubMed DOI

Nolivos S., Cayron J., Dedieu A., Page A., Delolme F., Lesterlin C. Role of AcrAB-TolC multidrug efflux pump in drug-resistance acquisition by plasmid transfer. Science. 2019;364:778–782. doi: 10.1126/science.aav6390. PubMed DOI

Martinez J.L., Sanchez M.B., Martinez-Solano L., Hernandez A., Garmendia L., Fajardo A., Alvarez-Ortega C. Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems. FEMS Microbiol. Rev. 2009;33:430–449. doi: 10.1111/j.1574-6976.2008.00157.x. PubMed DOI

Butaye P., Cloeckaert A., Schwarz S. Mobile genes coding for efflux-mediated antimicrobial resistance in Gram-positive and Gram-negative bacteria. Int. J. Antimicrob. Agents. 2003;22:205–210. doi: 10.1016/S0924-8579(03)00202-4. PubMed DOI

Tiwari S., Jamal S.B., Hassan S.S., Carvalho P., Almeida S., Barh D., Ghosh P., Silva A., Castro T.L.P., Azevedo V. Two-Component Signal Transduction Systems of Pathogenic Bacteria As Targets for Antimicrobial Therapy: An Overview. Front. Microbiol. 2017;8:1878. doi: 10.3389/fmicb.2017.01878. PubMed DOI PMC

Hu W.S., Chen H.W., Zhang R.Y., Huang C.Y., Shen C.F. The Expression Levels of Outer Membrane Proteins STM1530 and OmpD, Which Are Influenced by the CpxAR and BaeSR Two-Component Systems, Play Important Roles in the Ceftriaxone Resistance of Salmonella enterica Serovar Typhimurium. Antimicrob. Agents Chemother. 2011;55:3829–3837. doi: 10.1128/AAC.00216-11. PubMed DOI PMC

Jayol A., Nordmann P., Brink A., Poirel L. Heteroresistance to Colistin in Klebsiella pneumoniae Associated with Alterations in the PhoPQ Regulatory System. Antimicrob. Agents Chemother. 2015;59:2780–2784. doi: 10.1128/AAC.05055-14. PubMed DOI PMC

Zhang K., Liu L., Yang M., Chen C., Li X., Tian J., Luo C., Wang X., Wang M. Reduced porin expression with EnvZ-OmpR, PhoPQ, BaeSR two-component system down-regulation in carbapenem resistance of Klebsiella pneumoniae based on proteomic analysis. Microb. Pathog. 2022;170:105686. doi: 10.1016/j.micpath.2022.105686. PubMed DOI

Srinivasan V.B., Vaidyanathan V., Mondal A., Rajamohan G. Role of the two component signal transduction system CpxAR in conferring cefepime and chloramphenicol resistance in Klebsiella pneumoniae NTUH-K2044. PLoS ONE. 2012;7:e33777. doi: 10.1371/journal.pone.0033777. PubMed DOI PMC

Cheng H.Y., Chen Y.F., Peng H.L. Molecular characterization of the PhoPQ-PmrD-PmrAB mediated pathway regulating polymyxin B resistance in Klebsiella pneumoniae CG43. J. Biomed. Sci. 2010;17:60. doi: 10.1186/1423-0127-17-60. PubMed DOI PMC

Cannatelli A., Di Pilato V., Giani T., Arena F., Ambretti S., Gaibani P., D’Andrea M.M., Rossolini G.M. In vivo evolution to colistin resistance by PmrB sensor kinase mutation in KPC-producing Klebsiella pneumoniae is associated with low-dosage colistin treatment. Antimicrob. Agents Chemother. 2014;58:4399–4403. doi: 10.1128/AAC.02555-14. PubMed DOI PMC

Lucena A.C.R., Ferrarini M.G., de Oliveira W.K., Marcon B.H., Morello L.G., Alves L.R., Faoro H. Modulation of Klebsiella pneumoniae Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment. Biomedicines. 2023;11:1515. doi: 10.3390/biomedicines11061515. PubMed DOI PMC

Tamayo R., Ryan S.S., McCoy A.J., Gunn J.S. Identification and genetic characterization of PmrA-regulated genes and genes involved in polymyxin B resistance in Salmonella enterica serovar Typhimurium. Infect. Immun. 2002;70:6770–6778. doi: 10.1128/IAI.70.12.6770-6778.2002. PubMed DOI PMC

Pandeya A., Ojo I., Alegun O., Wei Y. Periplasmic Targets for the Development of Effective Antimicrobials against Gram-Negative Bacteria. ACS Infect. Dis. 2020;6:2337–2354. doi: 10.1021/acsinfecdis.0c00384. PubMed DOI PMC

Lo Sciuto A., Fernández-Piñar R., Bertuccini L., Iosi F., Superti F., Imperi F. The Periplasmic Protein TolB as a Potential Drug Target in Pseudomonas aeruginosa. PLoS ONE. 2014;9:e103784. doi: 10.1371/journal.pone.0103784. PubMed DOI PMC

Narita S., Tokuda H. Sorting of bacterial lipoproteins to the outer membrane by the Lol system. Methods Mol. Biol. 2010;619:117–129. doi: 10.1007/978-1-60327-412-8_7. PubMed DOI

Henry R., Vithanage N., Harrison P., Seemann T., Coutts S., Moffatt J.H., Nation R.L., Li J., Harper M., Adler B., et al. Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and transport of lipoproteins, phospholipids, and poly-beta-1,6-N-acetylglucosamine. Antimicrob. Agents Chemother. 2012;56:59–69. doi: 10.1128/AAC.05191-11. PubMed DOI PMC

de la Cruz F., Frost L.S., Meyer R.J., Zechner E.L. Conjugative DNA metabolism in Gram-negative bacteria. FEMS Microbiol. Rev. 2010;34:18–40. doi: 10.1111/j.1574-6976.2009.00195.x. PubMed DOI

Low W.W., Seddon C., Beis K., Frankel G. The Interaction of the F-Like Plasmid-Encoded TraN Isoforms with Their Cognate Outer Membrane Receptors. J. Bacteriol. 2023;205:e00061-23. doi: 10.1128/jb.00061-23. PubMed DOI PMC

Ou J.T., Anderson T.F. Role of pili in bacterial conjugation. J. Bacteriol. 1970;102:648–654. doi: 10.1128/jb.102.3.648-654.1970. PubMed DOI PMC

Clarke M., Maddera L., Harris R.L., Silverman P.M. F-pili dynamics by live-cell imaging. Proc. Natl. Acad. Sci. USA. 2008;105:17978–17981. doi: 10.1073/pnas.0806786105. PubMed DOI PMC

Durrenberger M.B., Villiger W., Bachi T. Conjugational junctions: Morphology of specific contacts in conjugating Escherichia coli bacteria. J. Struct. Biol. 1991;107:146–156. doi: 10.1016/1047-8477(91)90018-R. PubMed DOI

Rozwandowicz M., Brouwer M.S.M., Fischer J., Wagenaar J.A., Gonzalez-Zorn B., Guerra B., Mevius D.J., Hordijk J. Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae. J. Antimicrob. Chemother. 2018;73:1121–1137. doi: 10.1093/jac/dkx488. PubMed DOI

Villa L., Garcia-Fernandez A., Fortini D., Carattoli A. Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants. J. Antimicrob. Chemother. 2010;65:2518–2529. doi: 10.1093/jac/dkq347. PubMed DOI

Vakulenko S.B., Mobashery S. Versatility of aminoglycosides and prospects for their future. Clin. Microbiol. Rev. 2003;16:430–450. doi: 10.1128/CMR.16.3.430-450.2003. PubMed DOI PMC

Stogios P.J., Cox G., Spanogiannopoulos P., Pillon M.C., Waglechner N., Skarina T., Koteva K., Guarné A., Savchenko A., Wright G.D. Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nat. Commun. 2016;7:11343. doi: 10.1038/ncomms11343. PubMed DOI PMC

Poirel L., Rodriguez-Martinez J.M., Mammeri H., Liard A., Nordmann P. Origin of plasmid-mediated quinolone resistance determinant QnrA. Antimicrob. Agents Chemother. 2005;49:3523–3525. doi: 10.1128/AAC.49.8.3523-3525.2005. PubMed DOI PMC

Wang M., Sahm D.F., Jacoby G.A., Hooper D.C. Emerging plasmid-mediated quinolone resistance associated with the qnr gene in Klebsiella pneumoniae clinical isolates in the United States. Antimicrob. Agents Chemother. 2004;48:1295–1299. doi: 10.1128/AAC.48.4.1295-1299.2004. PubMed DOI PMC

Piddock L.J.V. Multidrug-resistance efflux pumps-not just for resistance. Nat. Rev. Microbiol. 2006;4:629–636. doi: 10.1038/nrmicro1464. PubMed DOI

Bunikis I., Denker K., Ostberg Y., Andersen C., Benz R., Bergström S. An RND-type efflux system in Borrelia burgdorferi is involved in virulence and resistance to antimicrobial compounds. PLoS Pathog. 2008;4:e1000009. doi: 10.1371/journal.ppat.1000009. PubMed DOI PMC

Hirakata Y., Srikumar R., Poole K., Gotoh N., Suematsu T., Kohno S., Kamihira S., Hancock R.E.W., Speert D.P. Multidrug efflux systems play an important role in the invasiveness of Pseudomonas aeruginosa. J. Exp. Med. 2002;196:109–118. doi: 10.1084/jem.20020005. PubMed DOI PMC

Jerse A.E., Sharma N.D., Simms A.N., Crow E.T., Snyder L.A., Shafer W.M. A gonococcal efflux pump system enhances bacterial survival in a female mouse model of genital tract infection. Infect. Immun. 2003;71:5576–5582. doi: 10.1128/IAI.71.10.5576-5582.2003. PubMed DOI PMC

Nishino K., Latifi T., Groisman E.A. Virulence and drug resistance roles of multidrug efflux systems of Salmonella enterica serovar Typhimurium. Mol. Microbiol. 2006;59:126–141. doi: 10.1111/j.1365-2958.2005.04940.x. PubMed DOI

Buckner M.M.C., Saw H.T.H., Osagie R.N., McNally A., Ricci V., Wand M.E., Woodford N., Ivens A., Webber M.A., Piddock L.J.V. Clinically Relevant Plasmid-Host Interactions Indicate that Transcriptional and Not Genomic Modifications Ameliorate Fitness Costs of Klebsiella pneumoniae Carbapenemase-Carrying Plasmids. mBio. 2018;9:e02303-17. doi: 10.1128/mBio.02303-17. PubMed DOI PMC

Tanimoto K., Tomita H., Fujimoto S., Okuzumi K., Ike Y. Fluoroquinolone enhances the mutation frequency for meropenem-selected carbapenem resistance in Pseudomonas aeruginosa, but use of the high-potency drug doripenem inhibits mutant formation. Antimicrob. Agents Chemother. 2008;52:3795–3800. doi: 10.1128/AAC.00464-08. PubMed DOI PMC

Filgona J., Banerjee T., Anupurba S. Role of efflux pumps inhibitor in decreasing antibiotic resistance of Klebsiella pneumoniae in a tertiary hospital in North India. J. Infect. Dev. Ctries. 2015;9:815–820. doi: 10.3855/jidc.6216. PubMed DOI

Bush K., Jacoby G.A. Updated functional classification of beta-lactamases. Antimicrob. Agents Chemother. 2010;54:969–976. doi: 10.1128/AAC.01009-09. PubMed DOI PMC

Stoesser N., Giess A., Batty E.M., Sheppard A.E., Walker A.S., Wilson D.J., Didelot X., Bashir A., Sebra R., Kasarskis A., et al. Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting. Antimicrob. Agents Chemother. 2014;58:7347–7357. doi: 10.1128/AAC.03900-14. PubMed DOI PMC

Deleo F.R., Chen L., Porcella S.F., Martens C.A., Kobayashi S.D., Porter A.R., Chavda K.D., Jacobs M.R., Mathema B., Olsen R.J., et al. Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc. Natl. Acad. Sci. USA. 2014;111:4988–4993. doi: 10.1073/pnas.1321364111. PubMed DOI PMC

Sheppard A.E., Stoesser N., Wilson D.J., Sebra R., Kasarskis A., Anson L.W., Giess A., Pankhurst L.J., Vaughan A., Grim C.J., et al. Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC. Antimicrob. Agents Chemother. 2016;60:3767–3778. doi: 10.1128/AAC.00464-16. PubMed DOI PMC

Bialek-Davenet S., Lavigne J.P., Guyot K., Mayer N., Tournebize R., Brisse S., Leflon-Guibout V., Nicolas-Chanoine M.H. Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae. J. Antimicrob. Chemother. 2015;70:81–88. doi: 10.1093/jac/dku340. PubMed DOI

Wong M.H.Y., Chan E.W.C., Chen S. Evolution and Dissemination of OqxAB-Like Efflux Pumps, an Emerging Quinolone Resistance Determinant among Members of Enterobacteriaceae. Antimicrob. Agents Chemother. 2015;59:3290–3297. doi: 10.1128/AAC.00310-15. PubMed DOI PMC

Norman A., Hansen L.H., She Q.X., Sorensen S.J. Nucleotide sequence of pOLA52: A conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid. 2008;60:59–74. doi: 10.1016/j.plasmid.2008.03.003. PubMed DOI

Li L., Liao X., Yang Y., Sun J., Li L., Liu B., Yang S., Ma J., Li X., Zhang Q., et al. Spread of oqxAB in Salmonella enterica serotype Typhimurium predominantly by IncHI2 plasmids. J. Antimicrob. Chemother. 2013;68:2263–2268. doi: 10.1093/jac/dkt209. PubMed DOI

Liu B.T., Yang Q.E., Li L., Sun J., Liao X.P., Fang L.X., Yang S.S., Deng H., Liu Y.H. Dissemination and characterization of plasmids carrying oqxAB-blaCTX-M genes in Escherichia coli isolates from food-producing animals. PLoS ONE. 2013;8:e73947. doi: 10.1371/journal.pone.0073947. PubMed DOI PMC

Li J., Zhang H.Y., Ning J.A., Sajid A., Cheng G.Y., Yuan Z.H., Hao H.H. The nature and epidemiology of OqxAB, a multidrug efflux pump. Antimicrob. Resist. Infect. Control. 2019;8:44. doi: 10.1186/s13756-019-0489-3. PubMed DOI PMC

Hasdemir U.O., Chevalier J., Nordmann P., Pagès J.M. Detection and prevalence of active drug efflux mechanism in various multidrug-resistant Klebsiella pneumoniae strains from Turkey. J. Clin. Microbiol. 2004;42:2701–2706. doi: 10.1128/JCM.42.6.2701-2706.2004. PubMed DOI PMC

Mazzariol A., Zuliani J., Cornaglia G., Rossolini G.M., Fontana R. AcrAB Efflux System: Expression and Contribution to Fluoroquinolone Resistance in Klebsiella spp. Antimicrob. Agents Chemother. 2002;46:3984–3986. doi: 10.1128/AAC.46.12.3984-3986.2002. PubMed DOI PMC

Ma D., Cook D.N., Alberti M., Pon N.G., Nikaido H., Hearst J.E. Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli. Mol. Microbiol. 1995;16:45–55. doi: 10.1111/j.1365-2958.1995.tb02390.x. PubMed DOI

Schneiders T., Amyes S.G., Levy S.B. Role of AcrR and RamA in fluoroquinolone resistance in clinical Klebsiella pneumoniae isolates from Singapore. Antimicrob. Agents Chemother. 2003;47:2831–2837. doi: 10.1128/AAC.47.9.2831-2837.2003. PubMed DOI PMC

Zhang C.Z., Chang M.X., Yang L., Liu Y.Y., Chen P.X., Jiang H.X. Upregulation of AcrEF in Quinolone Resistance Development in Escherichia coli When AcrAB-TolC Function Is Impaired. Microb. Drug Resist. 2018;24:18–23. doi: 10.1089/mdr.2016.0207. PubMed DOI

Roy S., Datta S., Viswanathan R., Singh A.K., Basu S. Tigecycline susceptibility in Klebsiella pneumoniae and Escherichia coli causing neonatal septicaemia (2007-10) and role of an efflux pump in tigecycline non-susceptibility. J. Antimicrob. Chemother. 2013;68:1036–1042. doi: 10.1093/jac/dks535. PubMed DOI

Bialek-Davenet S., Marcon E., Leflon-Guibout V., Lavigne J.P., Bert F., Moreau R., Nicolas-Chanoine M.H. In Vitro Selection of ramR and soxR Mutants Overexpressing Efflux Systems by Fluoroquinolones as Well as Cefoxitin in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2011;55:2795–2802. doi: 10.1128/AAC.00156-11. PubMed DOI PMC

Dulyayangkul P., Wan Nur Ismah W.A.K., Douglas E.J.A., Avison M.B. Mutation of kvrA Causes OmpK35 and OmpK36 Porin Downregulation and Reduced Meropenem-Vaborbactam Susceptibility in KPC-Producing Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2020;64:e02208-19. doi: 10.1128/AAC.02208-19. PubMed DOI PMC

Palacios M., Miner T.A., Frederick D.R., Sepulveda V.E., Quinn J.D., Walker K.A., Miller V.L. Identification of Two Regulators of Virulence That Are Conserved in Klebsiella pneumoniae Classical and Hypervirulent Strains. mBio. 2018;9:e01443-18. doi: 10.1128/mBio.01443-18. PubMed DOI PMC

Tsang M.J., Yakhnina A.A., Bernhardt T.G. NlpD links cell wall remodeling and outer membrane invagination during cytokinesis in Escherichia coli. PLoS Genet. 2017;13:e1006888. doi: 10.1371/journal.pgen.1006888. PubMed DOI PMC

Forsberg K.J., Patel S., Wencewicz T.A., Dantas G. The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes. Chem. Biol. 2015;22:888–897. doi: 10.1016/j.chembiol.2015.05.017. PubMed DOI PMC

Fang L.X., Chen C., Cui C.Y., Li X.P., Zhang Y., Liao X.P., Sun J., Liu Y.H. Emerging High-Level Tigecycline Resistance: Novel Tetracycline Destructases Spread via the Mobile Tet(X) Bioessays. 2020;42:e2000014. doi: 10.1002/bies.202000014. PubMed DOI

Gasparrini A.J., Markley J.L., Kumar H., Wang B., Fang L., Irum S., Symister C.T., Wallace M., Burnham C.D., Andleeb S., et al. Tetracycline-inactivating enzymes from environmental, human commensal, and pathogenic bacteria cause broad-spectrum tetracycline resistance. Commun. Biol. 2020;3:241. doi: 10.1038/s42003-020-0966-5. PubMed DOI PMC

Fessler A.T., Wang Y., Wu C.M., Schwarz S. Mobile lincosamide resistance genes in staphylococci. Plasmid. 2018;99:22–31. doi: 10.1016/j.plasmid.2018.06.002. PubMed DOI

Cannatelli A., D’Andrea M.M., Giani T., Di Pilato V., Arena F., Ambretti S., Gaibani P., Rossolini G.M. In vivo emergence of colistin resistance in Klebsiella pneumoniae producing KPC-type carbapenemases mediated by insertional inactivation of the PhoQ/PhoP mgrB regulator. Antimicrob. Agents Chemother. 2013;57:5521–5526. doi: 10.1128/AAC.01480-13. PubMed DOI PMC

Naparstek L., Carmeli Y., Navon-Venezia S., Banin E. Biofilm formation and susceptibility to gentamicin and colistin of extremely drug-resistant KPC-producing Klebsiella pneumoniae. J. Antimicrob. Chemother. 2014;69:1027–1034. doi: 10.1093/jac/dkt487. PubMed DOI

Czobor I., Novais A., Rodrigues C., Chifiriuc M.C., Mihaescu G., Lazar V., Peixe L. Efficient transmission of IncFIIY and IncL plasmids and Klebsiella pneumoniae ST101 clone producing OXA-48, NDM-1 or OXA-181 in Bucharest hospitals. Int. J. Antimicrob. Agents. 2016;48:223–224. doi: 10.1016/j.ijantimicag.2016.05.004. PubMed DOI

van der Bij A.K., Pitout J.D. The role of international travel in the worldwide spread of multiresistant Enterobacteriaceae. J. Antimicrob. Chemother. 2012;67:2090–2100. doi: 10.1093/jac/dks214. PubMed DOI

Arakawa Y., Murakami M., Suzuki K., Ito H., Wacharotayankun R., Ohsuka S., Kato N., Ohta M. A novel integron-like element carrying the metallo-beta-lactamase gene blaIMP. Antimicrob. Agents Chemother. 1995;39:1612–1615. doi: 10.1128/AAC.39.7.1612. PubMed DOI PMC

Docquier J.D., Riccio M.L., Mugnaioli C., Luzzaro F., Endimiani A., Toniolo A., Amicosante G., Rossolini G.M. IMP-12, a new plasmid-encoded metallo-beta-lactamase from a Pseudomonas putida clinical isolate. Antimicrob. Agents Chemother. 2003;47:1522–1528. doi: 10.1128/AAC.47.5.1522-1528.2003. PubMed DOI PMC

Smet A., Van Nieuwerburgh F., Vandekerckhove T.T., Martel A., Deforce D., Butaye P., Haesebrouck F. Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: Insertional events of transposons and insertion sequences. PLoS ONE. 2010;5:e11202. doi: 10.1371/journal.pone.0011202. PubMed DOI PMC

Villa L., Poirel L., Nordmann P., Carta C., Carattoli A. Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes. J. Antimicrob. Chemother. 2012;67:1645–1650. doi: 10.1093/jac/dks114. PubMed DOI

Armin S., Fallah F., Karimi A., Karbasiyan F., Alebouyeh M., Rafiei Tabatabaei S., Rajabnejad M., Mansour Ghanaie R., Fahimzad S.A., Abdollahi N., et al. Antibiotic Susceptibility Patterns for Carbapenem-Resistant Enterobacteriaceae. Int. J. Microbiol. 2023;2023:8920977. doi: 10.1155/2023/8920977. PubMed DOI PMC

Bakthavatchalam Y.D., Pragasam A.K., Biswas I., Veeraraghavan B. Polymyxin susceptibility testing, interpretative breakpoints and resistance mechanisms: An update. J. Glob. Antimicrob. Resist. 2018;12:124–136. doi: 10.1016/j.jgar.2017.09.011. PubMed DOI

Lee C.R., Lee J.H., Park K.S., Kim Y.B., Jeong B.C., Lee S.H. Global Dissemination of Carbapenemase-Producing Klebsiella pneumoniae: Epidemiology, Genetic Context, Treatment Options, and Detection Methods. Front. Microbiol. 2016;7:895. doi: 10.3389/fmicb.2016.00895. PubMed DOI PMC

Zhou K., Lokate M., Deurenberg R.H., Tepper M., Arends J.P., Raangs E.G., Lo-Ten-Foe J., Grundmann H., Rossen J.W., Friedrich A.W. Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum beta-lactamase producing ST15 Klebsiella pneumoniae. Sci. Rep. 2016;6:20840. doi: 10.1038/srep20840. PubMed DOI PMC

Zhang Y., Zhao Y., Xu C., Zhang X., Li J., Dong G., Cao J., Zhou T. Chlorhexidine exposure of clinical Klebsiella pneumoniae strains leads to acquired resistance to this disinfectant and to colistin. Int. J. Antimicrob. Agents. 2019;53:864–867. doi: 10.1016/j.ijantimicag.2019.02.012. PubMed DOI

Mohapatra S.S., Dwibedy S.K., Padhy I. Polymyxins, the last-resort antibiotics: Mode of action, resistance emergence, and potential solutions. J. Biosci. 2021;46:85. doi: 10.1007/s12038-021-00209-8. PubMed DOI PMC

Jana B., Cain A.K., Doerrler W.T., Boinett C.J., Fookes M.C., Parkhill J., Guardabassi L. The secondary resistome of multidrug-resistant Klebsiella pneumoniae. Sci. Rep. 2017;7:42483. doi: 10.1038/srep42483. PubMed DOI PMC

Wyres K.L., Holt K.E. Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones. Trends Microbiol. 2016;24:944–956. doi: 10.1016/j.tim.2016.09.007. PubMed DOI

Carattoli A. Plasmids and the spread of resistance. Int. J. Med. Microbiol. 2013;303:298–304. doi: 10.1016/j.ijmm.2013.02.001. PubMed DOI

Sandoval-Motta S., Aldana M. Adaptive resistance to antibiotics in bacteria: A systems biology perspective. Wiley Interdiscip. Rev. Syst. Biol. Med. 2016;8:253–267. doi: 10.1002/wsbm.1335. PubMed DOI

Poole K. Bacterial stress responses as determinants of antimicrobial resistance. J. Antimicrob. Chemother. 2012;67:2069–2089. doi: 10.1093/jac/dks196. PubMed DOI

Tkachenko A.G. Stress Responses of Bacterial Cells as Mechanism of Development of Antibiotic Tolerance (Review) Appl. Biochem. Microbiol. 2018;54:108–127. doi: 10.1134/S0003683818020114. DOI

Tan Y.S., Zhang R.K., Liu Z.H., Li B.Z., Yuan Y.J. Microbial Adaptation to Enhance Stress Tolerance. Front. Microbiol. 2022;13:888746. doi: 10.3389/fmicb.2022.888746. PubMed DOI PMC

Ernst C.M., Braxton J.R., Rodriguez-Osorio C.A., Zagieboylo A.P., Li L., Pironti A., Manson A.L., Nair A.V., Benson M., Cummins K., et al. Adaptive evolution of virulence and persistence in carbapenem-resistant Klebsiella pneumoniae. Nat. Med. 2020;26:705–711. doi: 10.1038/s41591-020-0825-4. PubMed DOI PMC

Fernandez L., Hancock R.E. Adaptive and mutational resistance: Role of porins and efflux pumps in drug resistance. Clin. Microbiol. Rev. 2012;25:661–681. doi: 10.1128/CMR.00043-12. PubMed DOI PMC

Srinivasan V.B., Singh B.B., Priyadarshi N., Chauhan N.K., Rajamohan G. Role of novel multidrug efflux pump involved in drug resistance in Klebsiella pneumoniae. PLoS ONE. 2014;9:e96288. doi: 10.1371/journal.pone.0096288. PubMed DOI PMC

Chauzy A., Ih H., Jacobs M., Marchand S., Grégoire N., Couet W., Buyck J.M. Sequential Time-Kill, a Simple Experimental Trick To Discriminate between Pharmacokinetics/Pharmacodynamics Models with Distinct Heterogeneous Subpopulations versus Homogenous Population with Adaptive Resistance. Antimicrob. Agents Chemother. 2020;64:e00788-20. doi: 10.1128/AAC.00788-20. PubMed DOI PMC

Papaleo S., Alvaro A., Nodari R., Panelli S., Bitar I., Comandatore F. The red thread between methylation and mutation in bacterial antibiotic resistance: How third-generation sequencing can help to unravel this relationship. Front. Microbiol. 2022;13:957901. doi: 10.3389/fmicb.2022.957901. PubMed DOI PMC

Meletiadis J., Paranos P., Tsala M., Pournaras S., Vourli S. Pharmacodynamics of colistin resistance in carbapenemase-producing Klebsiella pneumoniae: The double-edged sword of heteroresistance and adaptive resistance. J. Med. Microbiol. 2022;71:001565. doi: 10.1099/jmm.0.001565. PubMed DOI

Ruzin A., Visalli M.A., Keeney D., Bradford P.A. Influence of transcriptional activator RamA on expression of multidrug efflux pump AcrAB and tigecycline susceptibility in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2005;49:1017–1022. doi: 10.1128/AAC.49.3.1017-1022.2005. PubMed DOI PMC

Ma X., Fu S., Wang Y., Zhao L., Yu W., He Y., Ni W., Gao Z. Proteomics Study of the Synergistic Killing of Tigecycline in Combination With Aminoglycosides Against Carbapenem-Resistant Klebsiella pneumoniae. Front. Cell Infect. Microbiol. 2022;12:920761. doi: 10.3389/fcimb.2022.920761. PubMed DOI PMC

Stokes J.M., Lopatkin A.J., Lobritz M.A., Collins J.J. Bacterial Metabolism and Antibiotic Efficacy. Cell Metab. 2019;30:251–259. doi: 10.1016/j.cmet.2019.06.009. PubMed DOI PMC

Adams-Sapper S., Gayoso A., Riley L.W. Stress-Adaptive Responses Associated with High-Level Carbapenem Resistance in KPC-Producing Klebsiella pneumoniae. J. Pathog. 2018;2018:3028290. doi: 10.1155/2018/3028290. PubMed DOI PMC

Tavio M.M., Vila J., Perilli M., Casanas L.T., Macia L., Amicosante G., Jimenez de Anta M.T. Enhanced active efflux, repression of porin synthesis and development of Mar phenotype by diazepam in two enterobacteria strains. J. Med. Microbiol. 2004;53:1119–1122. doi: 10.1099/jmm.0.45613-0. PubMed DOI

Dunn S.J., Connor C., McNally A. The evolution and transmission of multi-drug resistant Escherichia coli and Klebsiella pneumoniae: The complexity of clones and plasmids. Curr. Opin. Microbiol. 2019;51:51–56. doi: 10.1016/j.mib.2019.06.004. PubMed DOI

Xu L., Wang M., Yuan J., Wang H., Li M., Zhang F., Tian Y., Yang J., Wang J., Li B. The KbvR Regulator Contributes to Capsule Production, Outer Membrane Protein Biosynthesis, Antiphagocytosis, and Virulence in Klebsiella pneumoniae. Infect. Immun. 2021;89:e00016-21. doi: 10.1128/IAI.00016-21. PubMed DOI PMC

Wang M., Tian Y.J., Xu L., Zhang F.S., Lu H.G., Li M.R., Li B. High Osmotic Stress Increases OmpK36 Expression through the Regulation of KbvR to Decrease the Antimicrobial Resistance of Klebsiella pneumoniae. Microbiol. Spectr. 2022;10:e00507-22. doi: 10.1128/spectrum.00507-22. PubMed DOI PMC

Srinivasan V.B., Rajamohan G. KpnEF, a new member of the Klebsiella pneumoniae cell envelope stress response regulon, is an SMR-type efflux pump involved in broad-spectrum antimicrobial resistance. Antimicrob. Agents Chemother. 2013;57:4449–4462. doi: 10.1128/AAC.02284-12. PubMed DOI PMC

Liu Z., Guan J., Chen Z., Tai C., Deng Z., Chao Y., Ou H.Y. CpxR promotes the carbapenem antibiotic resistance of Klebsiella pneumoniae by directly regulating the expression and the dissemination of blaKPC on the IncFII conjugative plasmid. Emerg. Microbes Infect. 2023;12:2256427. doi: 10.1080/22221751.2023.2256427. PubMed DOI PMC

Li Y., Ge X. Discovering interrelated natural mutations of efflux pump KmrA from Klebsiella pneumoniae that confer increased multidrug resistance. Protein Sci. 2022;31:e4323. doi: 10.1002/pro.4323. PubMed DOI PMC

Klein G., Raina S. Regulated Assembly of LPS, Its Structural Alterations and Cellular Response to LPS Defects. Int. J. Mol. Sci. 2019;20:356. doi: 10.3390/ijms20020356. PubMed DOI PMC

Chen D., Zhao Y., Qiu Y., Xiao L., He H., Zheng D., Li X., Yu X., Xu N., Hu X., et al. CusS-CusR Two-Component System Mediates Tigecycline Resistance in Carbapenem-Resistant Klebsiella pneumoniae. Front. Microbiol. 2019;10:3159. doi: 10.3389/fmicb.2019.03159. PubMed DOI PMC

Williams C.L., Neu H.M., Alamneh Y.A., Reddinger R.M., Jacobs A.C., Singh S., Abu-Taleb R., Michel S.L.J., Zurawski D.V., Merrell D.S. Characterization of Acinetobacter baumannii Copper Resistance Reveals a Role in Virulence. Front. Microbiol. 2020;11:16. doi: 10.3389/fmicb.2020.00016. PubMed DOI PMC

Woolley C.A., Sutton J.M., Wand M.E. Mutations in SilS and CusS/OmpC represent different routes to achieve high level silver ion tolerance in Klebsiella pneumoniae. BMC Microbiol. 2022;22:113. doi: 10.1186/s12866-022-02532-y. PubMed DOI PMC

Wright M.S., Suzuki Y., Jones M.B., Marshall S.H., Rudin S.D., van Duin D., Kaye K., Jacobs M.R., Bonomo R.A., Adams M.D. Genomic and transcriptomic analyses of colistin-resistant clinical isolates of Klebsiella pneumoniae reveal multiple pathways of resistance. Antimicrob. Agents Chemother. 2015;59:536–543. doi: 10.1128/AAC.04037-14. PubMed DOI PMC

Cheng Y.H., Lin T.L., Lin Y.T., Wang J.T. Amino Acid Substitutions of CrrB Responsible for Resistance to Colistin through CrrC in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2016;60:3709–3716. doi: 10.1128/AAC.00009-16. PubMed DOI PMC

Cheng Y.H., Lin T.L., Lin Y.T., Wang J.T. A putative RND-type efflux pump, H239_3064, contributes to colistin resistance through CrrB in Klebsiella pneumoniae. J. Antimicrob. Chemother. 2018;73:1509–1516. doi: 10.1093/jac/dky054. PubMed DOI PMC

Pantel L., Juarez P., Serri M., Boucinha L., Lessoud E., Lanois A., Givaudan A., Racine E., Gualtieri M. Missense Mutations in the CrrB Protein Mediate Odilorhabdin Derivative Resistance in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 2023;65:e00139-21. doi: 10.1128/AAC.00139-21. PubMed DOI PMC

Kim S.J., Cho H., Ko K.S. Comparative analysis of the Colistin resistance-regulating gene cluster in Klebsiella species. J. Microbiol. 2022;60:461–468. doi: 10.1007/s12275-022-1640-z. PubMed DOI

McConville T.H., Annavajhala M.K., Giddins M.J., Macesic N., Herrera C.M., Rozenberg F.D., Bhushan G.L., Ahn D., Mancia F., Trent M.S., et al. CrrB Positively Regulates High-Level Polymyxin Resistance and Virulence in Klebsiella pneumoniae. Cell Rep. 2020;33:108313. doi: 10.1016/j.celrep.2020.108313. PubMed DOI PMC

Lin C.T., Peng H.L. Regulation of the homologous two-component systems KvgAS and KvhAS in Klebsiella pneumoniae CG43. J. Biochem. 2006;140:639–648. doi: 10.1093/jb/mvj196. PubMed DOI

Li L., Ma J., Cheng P., Li M., Yu Z., Song X., Yu Z., Sun H., Zhang W., Wang Z. Roles of two-component regulatory systems in Klebsiella pneumoniae: Regulation of virulence, antibiotic resistance, and stress responses. Microbiol. Res. 2023;272:127374. doi: 10.1016/j.micres.2023.127374. PubMed DOI

Zhang R., Wang Y. EvgS/EvgA, the unorthodox two-component system regulating bacterial multiple resistance. Appl. Environ. Microbiol. 2023;89:e0157723. doi: 10.1128/aem.01577-23. PubMed DOI PMC

Nishino K., Inazumi Y., Yamaguchi A. Global analysis of genes regulated by EvgA of the two-component regulatory system in Escherichia coli. J. Bacteriol. 2003;185:2667–2672. doi: 10.1128/JB.185.8.2667-2672.2003. PubMed DOI PMC

Lin M.H., Potel C.M., Tehrani K., Heck A.J.R., Martin N.I., Lemeer S. A New Tool to Reveal Bacterial Signaling Mechanisms in Antibiotic Treatment and Resistance. Mol. Cell Proteom. 2018;17:2496–2507. doi: 10.1074/mcp.RA118.000880. PubMed DOI PMC

Yoon Y., Song S.M. Structural Insights into the Lipopolysaccharide Transport (Lpt) System as a Novel Antibiotic Target. J. Microbiol. 2024;62:261–275. doi: 10.1007/s12275-024-00137-w. PubMed DOI

Zhang L., Guan Y., Cheng Y., Cokcetin N.N., Bottomley A.L., Robinson A., Harry E.J., van Oijen A.M., Su Q.P., Jin D. Fast evolution of SOS-independent multi-drug resistance in bacteria. Elife. 2025;13:RP95058. doi: 10.7554/eLife.95058. PubMed DOI PMC

Mlynarcik P., Kolar M. Detection of cell death markers as a tool for bacterial antimicrobial susceptibility testing. Epidemiol. Microbiol. Immunol. 2016;65:85–91. PubMed

Najít záznam

Citační ukazatele

Pouze přihlášení uživatelé

Možnosti archivace

Nahrávání dat ...