Molecular techniques like metabarcoding, while promising for exploring diversity of communities, are often impeded by the lack of reference DNA sequences available for taxonomic annotation. Our study explores the benefits of combining targeted DNA barcoding and morphological taxonomy to improve metabarcoding efficiency, using beach meiofauna as a case study. Beaches are globally important ecosystems and are inhabited by meiofauna, microscopic animals living in the interstitial space between the sand grains, which play a key role in coastal biodiversity and ecosystem dynamics. However, research on meiofauna faces challenges due to limited taxonomic expertise and sparse sampling. We generated 775 new cytochrome c oxidase I DNA barcodes from meiofauna specimens collected along the Netherlands' west coast and combined them with the NCBI GenBank database. We analysed alpha and beta diversity in 561 metabarcoding samples from 24 North Sea beaches, a region extensively studied for meiofauna, using both the enriched reference database and the NCBI database without the additional reference barcodes. Our results show a 2.5-fold increase in sequence annotation and a doubling of species-level Operational Taxonomic Units (OTUs) identification when annotating the metabarcoding data with the enhanced database. Additionally, our analyses revealed a bell-shaped curve of OTU richness across the intertidal zone, aligning more closely with morphological analysis patterns, and more defined community dissimilarity patterns between supralittoral and intertidal sites. Our research highlights the importance of expanding molecular reference databases and combining morphological taxonomy with molecular techniques for biodiversity assessments, ultimately improving our understanding of coastal ecosystems.

• MeSH
• bezobratlí genetika   klasifikace   MeSH
• biodiverzita MeSH
• ekosystém MeSH
• koupací pláže MeSH
• metagenomika metody   MeSH
• respirační komplex IV * genetika   MeSH
• taxonomické DNA čárové kódování * metody   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Nizozemsko MeSH
• Severní moře MeSH

Achorovermis testisinuosus gen. et sp. n. (Digenea: Aporocotylidae) infects the heart of the smalltooth sawfish, Pristis pectinata Latham (Rhinopristiformes: Pristidae), in the eastern Gulf of Mexico. Specimens of the new genus, along with the other blood flukes that infect batoids are similar by having an inverse U-shaped intestine and a curving testis as well as by lacking tegumental spines. The new genus differs from all of the other blood flukes infecting batoids by having an elongate body (>50 × longer than wide), a testis having >100 curves, and an ovary wholly anterior to the uterus. It differs from Ogawaia glaucostegi Cutmore, Cribb et Yong, 2018, the only other blood fluke infecting a rhinopristiform, by having a body that is >50 × (vs <30 ×) longer than wide, a testis that is >75 × (vs <40 ×) longer than wide and has >100 (vs <70) curves, an ovary wholly anterior to (vs lateral and dorsal to) the seminal vesicle, a uterus wholly posterior to (vs overlapping and lateral to both) the testis and ovary, and a sinuous (vs convoluted) uterus. The new species joins a small group of chondrichthyan blood flukes that lack tegumental spines: O. glaucostegi, Orchispirium heterovitellatum Madhavi et Rao, 1970, Myliobaticola richardheardi Bullard et Jensen, 2008, Electrovermis zappum Warren et Bullard, 2019. Blood flukes infecting batoids are further unique by having a curving testis. That is, the blood flukes infecting species within Selachii are morphologically distinct from those infecting species within the Batoidea (excluding Gymnurahemecus bulbosus Warren et Bullard, 2019). Based on the morphological similarity, we suspect that the new species shares a recent common ancestor with O. glaucostegi. The discovery of the new species brings the total number of chondrichthyan blood flukes to 11 species assigned to nine genera.

• MeSH
• infekce červy třídy Trematoda epidemiologie   parazitologie   veterinární   MeSH
• nemoci ryb epidemiologie   parazitologie   MeSH
• ohrožené druhy MeSH
• prevalence MeSH
• rejnokovití * MeSH
• Trematoda klasifikace   fyziologie   MeSH
• zvířata MeSH
• Check Tag
• mužské pohlaví MeSH
• ženské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Mexický záliv MeSH

Examination of 32 spiral valves from neonate specimens of hammerhead shark Sphyrna spp. (Carcharhiniformes: Sphyrnidae) captured between June and August 2018 off the Atlantic coast of South Carolina, USA, revealed the presence of the capillariid nematode Piscicapillaria bursata (Capillariidae) in the Carolina hammerhead S. gilberti, the scalloped hammerhead S. lewini, and their hybrids. This is the second find of this parasite originally described from hammerhead sharks off Australia, its first record from the western Atlantic Ocean, and its first record in a new host species and in hybrids.

• MeSH
• hlístice * MeSH
• žraloci * parazitologie   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Atlantský oceán MeSH
• Austrálie MeSH
• Jižní Karolína MeSH

The Patagonian seabass Acanthistius patachonicus (Jenyns, 1840) (Serranidae) is a marine fish valued for commercial and sport fisheries from Argentina. We report a new myxosporean (Cnidaria: Myxozoa) infecting the urinary system of the Patagonian seabass from San Antonio Bay, San Matías Gulf, on the Atlantic Ocean. The mature myxospores were subspherical, 8.2-11.0 μm × 7.9-11.0 μm and 7.7-9.0 μm in thickness; two subspherical polar capsules, 2.4-3.8 μm × 2.3-3.6 μm, with 3 to 4 turns of the polar tubule; openings on different valves in almost opposite directions. Ornamented shell valves exhibited 17-20 concentrically organized surface ridges. SSU rDNA phylogenetics analyses placed the new species in the freshwater urinary tract clade, clustering in a clade formed by Myxobilatus gasterostei (Parisi, 1912), Acauda hoffmani Whipps, 2011, and other Ortholinea spp. Based on spore morphology, site of infection, and molecular data, we described this myxozoan as Ortholinea concentrica n. sp.

• MeSH
• fylogeneze MeSH
• močové ústrojí parazitologie   MeSH
• Myxozoa * klasifikace   genetika   izolace a purifikace   MeSH
• nemoci ryb parazitologie   MeSH
• parazitární nemoci u zvířat parazitologie   MeSH
• Percoidea parazitologie   MeSH
• ribozomální DNA genetika   MeSH
• spory klasifikace   MeSH
• zvířata MeSH
• Check Tag
• ženské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Argentina MeSH
• Atlantský oceán MeSH

BACKGROUND: Anthropogenic factors can have a major impact on the contemporary distribution of intraspecific genetic diversity. Many freshwater fishes have finely structured and locally adapted populations, but their natural genetic structure can be affected by river engineering schemes across river basins, fish transfers in aquaculture industry and conservation management. The European bitterling (Rhodeus amarus) is a small fish that is a brood parasite of freshwater mussels and is widespread across continental Europe. Its range recently expanded, following sharp declines in the 1970s and 1980s. We investigated its genetic variability and spatial structure at the centre of its distribution at the boundary of three watersheds, testing the role of natural and anthropogenic factors in its genetic structure. RESULTS: Sequences of mitochondrial cytochrome B (CYTB) revealed that bitterling colonised central Europe from two Ponto-Caspian refugia, which partly defines its contemporary genetic structure. Twelve polymorphic microsatellite loci revealed pronounced interpopulation differentiation, with significant small-scale differentiation within the same river basins. At a large scale, populations from the Baltic Sea watershed (middle Oder and Vistula basins) were distinct from those from the Black Sea watershed (Danube basin), while populations from rivers of the North Sea watershed (Rhine, Elbe) originated from the admixture of both original sources. Notable exceptions demonstrated the potential role of human translocations across watersheds, with the upper River Oder (Baltic watershed) inhabited by fish from the Danube basin (Black Sea watershed) and a population in the southern part of the River Elbe (North Sea watershed) basin possessing a signal of admixture from the Danube basin. CONCLUSIONS: Hydrography and physical barriers to dispersal are only partly reflected in the genetic structure of the European bitterling at the intersection of three major watersheds in central Europe. Drainage boundaries have been obscured by human-mediated translocations, likely related to common carp, Cyprinus carpio, cultivation and game-fish management. Despite these translocations, populations of bitterling are significantly structured by genetic drift, possibly reinforced by its low dispersal ability. Overall, the impact of anthropogenic factors on the genetic structure of the bitterling populations in central Europe is limited.

• MeSH
• Bayesova věta MeSH
• druhová specificita MeSH
• frekvence genu genetika   MeSH
• genetická variace MeSH
• kapři genetika   MeSH
• lidé MeSH
• mikrosatelitní repetice genetika   MeSH
• mitochondriální DNA genetika   MeSH
• mitochondrie genetika   MeSH
• populační genetika MeSH
• řeky * MeSH
• sladká voda MeSH
• zeměpis MeSH
• zvířata MeSH
• Check Tag
• lidé MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Evropa MeSH
• Severní moře MeSH

Population regulation is a central concept in ecology, yet in many cases its presence and the underlying mechanisms are difficult to demonstrate. The current paradigm maintains that marine fish populations are predominantly regulated by density-dependent recruitment. While it is known that density-dependent somatic growth can be present too, its general importance remains unknown and most practical applications neglect it. This study aimed to close this gap by for the first time quantifying and comparing density dependence in growth and recruitment over a large set of fish populations. We fitted density-dependent models to time-series data on population size, recruitment and age-specific weight from commercially exploited fish populations in the Northeast Atlantic Ocean and the Baltic Sea. Data were standardized to enable a direct comparison within and among populations, and estimated parameters were used to quantify the impact of density regulation on population biomass. Statistically significant density dependence in recruitment was detected in a large proportion of populations (70%), whereas for density dependence in somatic growth the prevalence of density dependence depended heavily on the method (26% and 69%). Despite age-dependent variability, the density dependence in recruitment was consistently stronger among age groups and between alternative approaches that use weight-at-age or weight increments to assess growth. Estimates of density-dependent reduction in biomass underlined these results: 97% of populations with statistically significant parameters for growth and recruitment showed a larger impact of density-dependent recruitment on population biomass. The results reaffirm the importance of density-dependent recruitment in marine fishes, yet they also show that density dependence in somatic growth is not uncommon. Furthermore, the results are important from an applied perspective because density dependence in somatic growth affects productivity and catch composition, and therefore the benefits of maintaining fish populations at specific densities.

• MeSH
• biomasa * MeSH
• hustota populace MeSH
• populační dynamika MeSH
• ryby růst a vývoj   fyziologie   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Atlantský oceán MeSH

Despite the fact that most persistent toxic substances have hardly been primarily emitted for several decades, their concentrations are only slowly decreasing in the global oceans. Surface seawater samples were collected along a 38°-24° N/28°-67° W transect in the subtropical North Atlantic Ocean. While the concentration levels of hexachlorobenzene (2.1-6.1 pg L(-1)), dichlorodiphenyltrichloroethane (DDT, up to 2.1 pg L(-1)) and polychlorinated biphenyls (PCB, 10.8-24.9 pg L(-1)) were in the same range as observed earlier in the North Atlantic, hexachlorocyclohexane (HCH, 90-627 pg L(-1)) was found elevated, partly also relative to previous measurements in the same sea region. Hereby, the ratio α-HCH/γ-HCH was very low, 0.09-0.13. Chlordane and endosulfan were found in the range <3.0-11.1 and <5.8-8.8 pg L(-1) respectively. DDT metabolites, endrin and related pesticides were found below quantification limits. Spatial pollution patterns in surface seawaters seem to be determined by atmospheric and oceanic transport patterns, rather than by mixing and air-sea equilibrium. The comparison with global multicompartment chemistry-transport model predictions of surface seawater levels indicate underestimated degradation of PCBs and overestimated emissions of endosulfan.

• MeSH
• chlorované uhlovodíky analýza   MeSH
• monitorování životního prostředí MeSH
• mořská voda analýza   MeSH
• pesticidy analýza   MeSH
• polychlorované bifenyly analýza   MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Atlantský oceán MeSH

The insufficiently known nematode species Philometra margolisi Moravec, Vidal-Martínez et Aguirre-Macedo, 1995 (Philometridae) is redescribed based on light and scanning electron microscopical (SEM) examinations of specimens collected from the gonad of the type host, the red grouper Epinephelus morio (Valenciennes) (Serranidae, Perciformes), in the northern Gulf of Mexico off Florida, USA. Also, new prevalence data for females of P. margolisi were derived from 188 fish, and a subset of these (n = 38) were used to determine prevalence and intensity of male nematodes. The male of this species was studied with SEM for the first time, which revealed some new, taxonomically important morphological features. The male posterior end had a V-shaped caudal mound, four pairs of minute adanal papillae, a pair of large papillae located posterior to the cloacal aperture and a pair of very small phasmids. The distal end of the gubernaculum is unique among all gonad-infecting species of Philometra parasitizing serranids in that its ventral surface is flat, smooth, without the usual two longitudinal grooves; the dorsal lamellate structures on the gubernaculum are also different in this species. In contrast to data in the original species description, the body length of gravid females of P. margolisi was 132-280 mm. Overall prevalence for male nematodes (76.3%) was much higher than for females (15.4%), and female nematode prevalence was higher in samples collected during host spawing season than out of season (27.1% and 3.3%, respectively).

• MeSH
• druhová specificita MeSH
• gonády parazitologie   MeSH
• hlístice klasifikace   ultrastruktura   MeSH
• nematodózy epidemiologie   parazitologie   veterinární   MeSH
• nemoci ryb epidemiologie   parazitologie   MeSH
• Percoidea parazitologie   MeSH
• prevalence MeSH
• zvířata MeSH
• Check Tag
• mužské pohlaví MeSH
• ženské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Mexický záliv epidemiologie   MeSH

Divergence-time estimation based on molecular phylogenies and the fossil record has provided insights into fundamental questions of evolutionary biology. In Bayesian node dating, phylogenies are commonly time calibrated through the specification of calibration densities on nodes representing clades with known fossil occurrences. Unfortunately, the optimal shape of these calibration densities is usually unknown and they are therefore often chosen arbitrarily, which directly impacts the reliability of the resulting age estimates. As possible solutions to this problem, two nonexclusive alternative approaches have recently been developed, the “fossilized birth–death” (FBD) model and “total-evidence dating.” While these approaches have been shown to perform well under certain conditions, they require including all (or a random subset) of the fossils of each clade in the analysis, rather than just relying on the oldest fossils of clades. In addition, both approaches assume that fossil records of different clades in the phylogeny are all the product of the same underlying fossil sampling rate, even though this rate has been shown to differ strongly between higher level taxa. We here develop a flexible new approach to Bayesian age estimation that combines advantages of node dating and the FBD model. In our new approach, calibration densities are defined on the basis of first fossil occurrences and sampling rate estimates that can be specified separately for all clades. We verify our approach with a large number of simulated data sets, and compare its performance to that of the FBD model. We find that our approach produces reliable age estimates that are robust to model violation, on par with the FBD model. By applying our approach to a large data set including sequence data from over 1000 species of teleost fishes as well as 147 carefully selected fossil constraints, we recover a timeline of teleost diversification that is incompatible with previously assumed vicariant divergences of freshwater fishes. Our results instead provide strong evidence for transoceanic dispersal of cichlids and other groups of teleost fishes.

• MeSH
• Bayesova věta MeSH
• biodiverzita MeSH
• biologické modely * MeSH
• čas MeSH
• cichlidy klasifikace   MeSH
• fylogeneze * MeSH
• vznik druhů (genetika) MeSH
• zkameněliny MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Atlantský oceán MeSH

This study was carried out in the framework of the ICON project (Integrated Assessment of Contaminant Impacts on the North Sea) (Hylland et al., 2015) and aimed (1) to evaluate the toxicity of marine sediments using a battery of rapid toxicity bioassays, and; (2) to explore the applicability and data interpretation of in vitro toxicity profiling of sediment extracts obtained from ex situ passive sampling. Sediment samples were collected at 12 selected (estuarine, coastal, offshore) sites in the North Sea, Icelandic waters (as reference sites), south-western Baltic Sea and western Mediterranean during autumn 2008. Organic extracts using a mild non-destructive clean-up procedure were prepared from total sediment and silicone passive samplers and tested with five in vitro bioassays: DR-Luc bioassay, ER-Luc bioassay, AR-EcoScreen bioassay, transthyretin (TTR) binding assay, and Vibrio fischeri bioluminescence bioassay. In vitro toxicity profiling of total sediment and silicone passive sampler extracts showed the presence of multiple organic contaminations by arylhydrocarbon receptor agonists (e.g. polycyclic aromatic hydrocarbons) and endocrine-active compounds, as well as non-specific toxicity caused by organic contaminants, at virtually all sampling sites. In vitro responses to total sediment extracts from coastal/estuarine sites were significantly different from those in offshore sites (p < 0.05). Several bioassays of passive sampler extracts showed highest activity in some offshore sediment samples. Impact on embryogenesis success and larval growth in undiluted sediment elutriates was shown at some sites using the in vivo sea urchin embryo test. The observed toxicity profiles could only partially be explained by the chemical target analysis, indicating the presence of unknown or unanalysed biologically-active compounds in the sediments. In vitro bioassay testing with silicone passive sampler extracts of sediments is a promising tool to assess the toxic potency of the bioavailable fraction of hydrophobic sediment contaminants, but further work will be needed before it can be routinely applied for sediment quality assessment.

• MeSH
• Aliivibrio fischeri MeSH
• biotest MeSH
• chemické látky znečišťující vodu toxicita   MeSH
• geologické sedimenty chemie   MeSH
• ježovky MeSH
• monitorování životního prostředí metody   MeSH
• polycyklické aromatické uhlovodíky toxicita   MeSH
• receptory aromatických uhlovodíků MeSH
• testy toxicity metody   MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Severní moře MeSH