In Nov 2011, and then recurrently since Sep 2020, an extensive decline has been recorded in boxwood (Buxus sempervirens), sometimes with several dozens of damaged individuals planted in private gardens and public areas and purchased in amateur markets in the Czech Republic. The leaves of the plants first showed orange-bronze discoloration, then dried and fell off, and the affected plants died. The roots, collars and stems of these plants had dark brown to black necrotic lesions. Phytophthora occultans Man in 't Veld & K. Rosend. was consistently isolated on selective medium PARPNH (Jung et al. 1996) directly from segments of symptomatic collar tissues and from rhododendron leaf pieces used to bait excised roots. On 20% V8 agar (V8A) and on carrot agar (CA), colonies had a stellate pattern. Radial growth at 25°C was 9.4 mm/day on V8A and 5.3 mm/day on CA. The cardinal growth temperatures were min. 7°C, optimum 25 to 27°C, and max. 32°C. The isolates were homothallic and produced on CA colorless globose oogonia ranging from 25.4 to 36.4 µm (n = 40) in diam. Oospores were slightly aplerotic and measured (n = 40) 22.5 to 31.9 µm in diam., with a 0.9 to 1.5 µm thick wall. The antheridia were predominantly paragynous and averaged 11.5 × 9.9 µm (height × width, n = 40). Noncaducous sporangia were obpyriform, ovoid, elongated to irregular and semipapillate, sometimes bipapillate and measured (n = 40) 31.4 to 73.4 × 17.8 to 32.1 µm, and the L:B ratio was 1.9 to 2.0. Chlamydospores and hyphal swellings were not observed. The morphological characteristics resembled those described for P. occultans (Man in't Veld et al. 2015). The isolates were deposited in the Czech Collection of Phytopathogenic Oomycetes (CCPO) under accession nos. 551.11, 1158.20, 1176.21, 1201.21, 1218.21, 1236.21 and 1261.22. For molecular identification, the internal transcribed spacer (ITS) region, cytochrome oxidase subunit 1 gene (COX1), and translation elongation factor-1α (EF) gene from all isolates were amplified and sequenced using the primer pairs ITS4/ITS5 (White et al. 1990), COXF-CIT/COXR-CIT (Man in't Veld et al. 2015), and ELONGF1/ELONGR1 (Kroon et al. 2004), respectively. The resulting sequences of representative isolates P1158.20 and P1176.21 were deposited in GenBank (accession nos. MW750576 and OP326036 for ITS, ON862131 and OP313505 for COX1 and MW762616 and ON862132 for EF). BLASTn searches of GenBank, using the partial ITS, COX1, and EF sequences, revealed 100, 100, and 99% sequence identity, respectively, to P. occultans ex-holotype culture CBS101557 accessions JX978155, JX978156 and KF650770 (Man in't Veld et al. 2015). Concatenated sequences of the three genes were used to conduct a phylogenetic analysis using the maximum likelihood method in MEGA 11 (Tamura et al. 2021). The isolates were identified as P. occultans based on morphology and a multigene phylogenetic analysis. Koch´s postulates were confirmed by a soil infestation test. Healthy 2-year-old B. sempervirens plants were inoculated (9 plants per isolate and control, isolates no. 1158.20, 1176.21, 1261.22) with three 5-mm-diam. V8A mycelial plugs by inserting into the substrate near the collar. Control plants were treated with sterile agar plugs. All plants were kept in a greenhouse at 25°C and exposed to 24 h of flooding up to collar once a week. All inoculated plants showed wilting, collar lesions and root rot occurred after 21 days, while control plants remained healthy. The pathogen was reisolated from infected plants and confirmed by molecular identification. P. occultans was found for the first time in 1998 on Buxus sempervirens in the Netherlands and later in Belgium, the United Kingdom, Germany and Romania (Man in´t Veld et al. 2015, Nechwatal et al. 2014), as well as in the USA (Reeser et al. 2015, Gitto et al. 2018). This is the first report of P. occultans in the Czech Republic. This pathogen likely poses another significant threat to boxwood cultivation in addition to the previously invaded Cydalima perspectalis and Calonectria pseudonaviculata.

• Klíčová slova
• Buxus sempervirens, decline of boxwood, phytophthora dieback,
• Publikační typ
• časopisecké články MeSH

Ionic and nutrient compositions of throughfall, tributaries and lake outlet were analysed in the Plešné catchment-lake system (an unmanaged mountain forest in Central Europe) from 1997 to 2016. The aim was to evaluate changes in surface water chemistry after natural forest dieback. In the 2004-2008, 93% of the Norway spruce trees were killed by bark beetle outbreak, and all dead biomass remained in the catchment. Forest dieback changed the chemistry of all water fluxes, and the magnitude, timing, and duration of these changes differed for individual water constituents. The most pronounced decreases in throughfall concentrations occurred for K+, dissolved organic carbon (DOC), Ca2+ and Mg2+, i.e. elements mostly originating from canopy leaching, while concentrations of NH4+ and soluble reactive phosphorus (SRP) remained almost unaffected. In tributaries, the most rapid changes were increases in NO3-, K+, H+ and ionic aluminium (Ali) concentrations, while terrestrial export of DOC and P forms started more slowly. Immediately after the forest dieback, increase in NO3- concentrations was delayed by elevated DOC availability in soils. NO3- became the dominant anion, with maximum concentrations up to 346μeqL-1 within 5-7years after the bark beetle outbreak, and then started to decrease. Terrestrial exports of Ali, K+, H+, Mg2+, and Ca2+ accompanied NO3- leaching, but their trends differed due to their different sources. Elevated losses of SRP, DOC, and dissolved organic nitrogen continued until the end of the study. In the lake, microbial processes significantly decreased concentrations of NO3-, organic acid anions, H+ and Ali, and confounded the chemical trends observed in tributaries. Our results suggest that terrestrial losses of elements and the deterioration of waters after forest dieback are less pronounced in unmanaged than managed (clear-cut) catchments.

• Klíčová slova
• Aluminium, Bark beetle, Base cations, Nitrogen, Organic carbon, Phosphorus,
• MeSH
• dusík analýza   MeSH
• jezera chemie   mikrobiologie   MeSH
• lesy * MeSH
• mikrobiologie vody MeSH
• stromy MeSH
• uhlík analýza   MeSH
• voda chemie   MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Evropa MeSH
• Názvy látek
• dusík MeSH
• uhlík MeSH
• voda MeSH

Hydrological and microclimatic changes after insect-induced tree dieback were evaluated in an unmanaged central European mountain (Plešné, PL) forest and compared to climate-related changes in a similar, but almost intact (Čertovo, CT) control forest during two decades. From 2004 to 2008, 93% of Norway spruce trees were killed by a bark beetle outbreak, and the entire PL area was left to subsequent natural development. We observed that (1) climate-related increases in daily mean air temperature (2 m above ground) were 1.6 and 0.5 °C on an annual and growing season basis, respectively, and an increase in daily mean soil temperature (5 cm below ground) was 0.9 °C during growing seasons at the CT control from 2004 to 2017; (2) daily mean soil and air temperatures increased by 0.7-1.2 °C on average more at the disturbed PL plots than in the healthy forest; (3) water input to soils increased by 20% but decreased by 17% at elevations of 1122 and 1334 m, respectively, due to decreased occult deposition to, and evaporation from, canopies after tree dieback; (4) soil moisture was 5% higher on average (but up to 17% higher in dry summer months) in the upper PL soil horizons for 5-6 years following the tree dieback; (5) run-off from the PL forest ~6% (~70 mm yr-1) increased relatively to the CT forest (but without extreme peak flows and erosion events) after tree dieback due to the ceased transpiration of dead trees and elevated water input to soils; and (6) relative air humidity was 4% lower on average at disturbed plots than beneath living trees. The rapid tree regeneration during the decade following tree dieback resulted in a complete recovery in soil moisture, a slow recovery of discharge and air humidity, but a still insignificant recovery in air and soil temperatures.

• Klíčová slova
• Bark beetle, Climate change, Microclimate characteristics, Natural disturbance, Spruce forest,
• MeSH
• hydrologie MeSH
• lesy MeSH
• mikroklima * MeSH
• půda MeSH
• stromy * MeSH
• Publikační typ
• časopisecké články MeSH
• Geografické názvy
• Norsko MeSH
• Názvy látek
• půda MeSH

The genome sequence of a mitovirus found in an isolate of Diaporthe rudis, one of the causal agents of Phomopsis dieback on grapevines, was determined by two high-throughput sequencing approaches, small RNA and total RNA sequencing. The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).

• MeSH
• délka genomu MeSH
• exprese genu MeSH
• fylogeneze * MeSH
• genom virový * MeSH
• mykoviry klasifikace   genetika   izolace a purifikace   MeSH
• nemoci rostlin mikrobiologie   MeSH
• otevřené čtecí rámce MeSH
• RNA-dependentní RNA-polymerasa genetika   MeSH
• Saccharomycetales virologie   MeSH
• sekvenování celého genomu MeSH
• virové proteiny genetika   MeSH
• Vitis mikrobiologie   MeSH
• Publikační typ
• časopisecké články MeSH
• Názvy látek
• RNA-dependentní RNA-polymerasa MeSH
• virové proteiny MeSH

Cork oak (Quercus suber L.) is an evergreen tree native to SW Europe and NW Africa. It covers 2·106 ha in the western Mediterranean basin, forms heterogeneous forest ecosystems and represents an important source of income derived from cork production. While in Iberia, Italy, Tunisia and Algeria, drought and several endemic pathogens have been associated with cork oak decline (Moricca et al. 2016; Smahi et al. 2017), in Morocco there is no evidence, apart from overgrazing and human intervention (Fennane and Rejdali 2015), of a pathogen associated with oak decline. In December 2019, extensive dieback and mortality of 60-year-old cork oak trees were observed in a natural stand of ca 150 ha located 5 km east from Touazithe, in Maâmora forest, Morocco (34°13'38''N, 6°14'51''W - 87 m a.s.l.). Two years before, Q. suber seedlings from a local nursery were planted to increase tree density. Symptoms in trees and planted seedlings included chlorosis, reddish-brown discoloration of the whole crown and dieback starting in the upper crown. Root rot and lack of fine roots were observed. Tree mortality was estimated at ca 30%, and disease incidences of trees and seedlings were 45 and 70%, respectively. A Phytophthora species was consistently isolated from the rhizosphere of 3 symptomatic trees randomly selected at the site using leaves as bait (Jung et al. 1996). On carrot agar Phytophthora colonies were uniform and cottonwool-like. Sporangia were typically terminal, with ovoid, and obpyriform shape, mostly papillate, measuring 30.7 ± 4.7 µm length and 22.7 ± 4.1 µm wide. Oogonia were produced in single culture, and they were globose to subglobose, elongated to ellipsoid, 32.1 ± 2.9 µm in diameter and 46.1 ± 4.8 µm in length. Oospores were usually spherical, thick-walled, and measured 28.1 ± 2.4 µm. Antheridia were paragynous, mostly spherical, measuring 12.2 ± 1.4 µm. Isolates had minimum and maximum temperatures of 5 °C and 30 °C, respectively, and a growth optimum at 20 °C. Apart from the small size of sporangia, features were typical of Phytophthora quercina Jung. The identity of a representative strain (TJ1500) was corroborated by sequencing the ITS and mitochondrial cox1 gene regions, and BLAST search in GenBank showed 100% homology with sequences of the ex-type culture of P. quercina (KF358229 and KF358241 accessions, respectively). Both sequences of the representative isolate were submitted to GenBank (accessions OP086243 and OP290549). The strain TJ1500 is currently stored within the culture collections of the Mendel University in Brno and the University of Sassari. Its pathogenicity was verified and compared with a P. cinnamomi strain in a soil infestation test with one-year-old cork oak seedlings (Corcobado et al. 2017). Five months after inoculation, the symptoms described were observed in the seedlings, and fine root weight of plants inoculated with the TJ1500 strain and P. cinnamomi was reduced by 19 and 42%, respectively, in relation to non-inoculated controls. The pathogen was re-isolated from the necrotic roots, thus fulfilling Koch's postulates. So far, P. quercina has been reported associated with chronic mortality of cork oak in new plantations in Spain (Martín-García et al. 2015; Jung et al. 2016) and natural forests in Italy (Seddaiu et al. 2020). To our knowledge this is the first report of P. quercina in Morocco. Givenat Morocco is an important cork producing country, our finding warns about the risk this pathogen poses to Q. suber and other North African oaks.

• Klíčová slova
• coark oak, drought, forest decline,
• Publikační typ
• časopisecké články MeSH

Neofusicoccum parvum (Pennycook & Samuels) Crous, Slippers & A.J.L. Phillips is a cosmopolitan pathogen causing dieback of multiple diverse woody hosts including highbush blueberry (Vaccinium corymbosum L.). This fungus can survive inside colonized plants without causing any symptoms for several years. Once the endophytic lifestyle is switched to the parasitic one, the symptoms of dieback can rapidly occur (bronze leaves, necroses under the bark, apoplexy) and the plant usually declines within a few weeks (Slipper and Wingfield 2007). In August 2022, blueberry plants displaying symptoms described above were observed in a production orchard located in Hovorany, the Czech Republic. Around 3 % of 1000 observed plants were symptomatic. In order to identify the pathogen, leaves, stems and roots of three diseased plants were collected, sectioned into small pieces (5 × 5 mm), surface sterilized (60 s in 75% ethanol, followed by 60 s in 1% sodium hypochlorite and rinsed three times using sterile distilled water), plated on potato dextrose agar (PDA) supplemented with 0.5 g/liter of streptomycin sulfate (PDAS) (Biosynth, Staad, Switzerland) and incubated at 25°C for 2 weeks at dark. Newly developed mycelia were immediately transferred to fresh PDA plates and purified by single-spore or hyphal-tip isolation. In total 33 fungal isolates were obtained. All the 33 isolates shared similar morphology and resembled Botryosphaeriaceae spp. Colonies on PDA (7 d at 25°C) were felty, white to iron grey in the centre. Conidiomata were observed on sterile pine needles on 2 % water agar (WA) at 25°C under near-UV light after 2 wks (110-220 × 60-175 μm). Conidia (n=30) were cylindrical to ellipsoidal, hyaline, 0(-1)-septate, (3.8-8.1 × 2-3 μm). Two representative isolates were deposited at the Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands (CBS 149846 and CBS 149847). The partial internal transcribed spacer (ITS) regions, beta-tubulin gene (tub2) and translation elongation factor 1-alpha (tef) gene were amplified from genomic DNA of both isolates following primers and protocols previously described (Eichmeier et al. 2020). Newly generated sequences were deposited in NCBI GenBank (acc. nos. ITS: OQ376566, OQ376567; tub2: OQ401701, OQ401702 and tef: OQ401699, OQ401700), being >99% identical (ITS 483/484 nt, tub2 426/430 nt and tef 230/232 nt) with the ex-type ITS (AY236943), tub2 (AY236888) and tef (AY236917) sequences of N. parvum strain CMW9081. Phylogenetically, newly obtained isolates grouped with ex-type and another three cultures of N. parvum in the three gene-based phylogenetic tree with strong 98/1.0 (BP/PP) support. To confirm pathogenicity, one-year-old canes of ten two-year-old V. corymbosum plants grown in pots were wounded by a 5 mm diam cork borer, and a 5-mm mycelial plug of a 7-day-old culture of both (CBS 149846 and CBS 149847) strains (five plants per strain) was inserted into the wound. Ten plants were inoculated with sterile PDA plugs and served as controls. Wounds were covered by sterile wet cotton, sealed with Parafilm® and inoculated plants were maintained in a growth chamber at 20 °C with 12/12 h light/dark period. Within two weeks, inoculated shoots changed colour from green to dark brown and exhibited dark necroses under the bark; after one month inoculated plants declined, while controls remained symptomless. The pathogen was reisolated from the inoculated plants with 100 % re-isolation rate, and its identity confirmed by sequencing ITS region. The experiment was repeated. Neofusicoccum parvum causing dieback of highbush blueberry was already reported from Australia, California, Chile, China, Italy, Mexico, Portugal and Uruguay (Rossman et al. 2023). Pecenka et al. (2021) reported a presence of another pathogen - Lasiodiplodia theobromae (Pat.) Griffon & Maubl. from the same plantation. This suggests that stem blight and dieback of highbush blueberry is caused by more than one Botryosphaeriaceae spp. as it was previously proved by Xu et al. (2015). To the best of our knowledge, this is the first report of stem blight and dieback of highbush blueberry caused by N. parvum in the Czech Republic.

• Klíčová slova
• Botryosphaeriaceae, Causal Agent, Fungi, Neofusicoccum parvum, Vaccinium corymbosum, highbush blueberry, molecular identification, pathogenicity,
• Publikační typ
• časopisecké články MeSH

Several Botryosphaeriaceae species are known to occur worldwide, causing dieback, canker and fruit rot on various hosts. Surveys conducted in ten commercial citrus orchards in the northern region of Algeria revealed five species of Botryosphaeriaceae belonging to three genera associated with diseased trees. Morphological and cultural characteristics as well as phylogenetic analyses of the internal transcribed spacer (ITS) region and the translation elongation factor 1-alpha (tef1-α) identified Diplodia mutila, Diplodia seriata, Dothiorella viticola, Lasiodiplodia mediterranea and a novel species which is here described as Lasiodiplodia mithidjana sp. nov.. Of these, L. mithidjana (14.1% of the samples) and L. mediterranea (13% of the samples) were the most widespread and abundant species. Pathogenicity tests revealed that L. mediterranea and D. seriata were the most aggressive species on citrus shoots. This study highlights the importance of Botryosphaeriaceae species as agents of canker and dieback of citrus trees in Algeria.

• MeSH
• Ascomycota klasifikace   genetika   patogenita   MeSH
• DNA fungální genetika   MeSH
• druhová specificita MeSH
• fylogeneze MeSH
• nemoci rostlin mikrobiologie   MeSH
• pomerančovník čínský mikrobiologie   MeSH
• virulence MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Alžírsko MeSH
• Názvy látek
• DNA fungální MeSH

Forest disturbances affect ecosystem biogeochemistry, water quality, and carbon cycling. We analyzed water chemistry before, during, and after a dieback event at a headwater catchment in the Bohemian Forest (central Europe) together with an un-impacted reference catchment, focusing on drivers and responses of dissolved organic carbon (DOC) leaching. We analyzed data regarding carbon input to the forest floor via litter and throughfall, changes in soil moisture and composition, streamwater chemistry, discharge, and temperature. We observed three key points. (i) In the first 3 years following dieback, DOC production from dead biomass led to increased concentrations in soil, but DOC leaching did not increase due to chemical suppression of its solubility by elevated concentrations of protons and polyvalent cations and elevated microbial demand for DOC associated with high ammonium (NH4+) concentrations. (ii) DOC leaching remained low during the next 2 years because its availability in soils declined, which also left more NH4+ available for nitrifiers, increasing NO3- and proton production that further increased the chemical suppression of DOC mobility. (iii) After 5 years, DOC leaching started to increase as concentrations of NO3-, protons, and polyvalent cations started to decrease in soil water. Our data suggest that disturbance-induced changes in N cycling strongly influence DOC leaching via both chemical and biological mechanisms and that the magnitude of DOC leaching may vary over periods following disturbance. Our study adds insights as to why the impacts of forest disturbances are sometime observed at the local soil scale but not simultaneously on the larger catchment scale.

• MeSH
• ekosystém MeSH
• lesy MeSH
• půda MeSH
• stromy * MeSH
• uhlík * MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Geografické názvy
• Evropa MeSH
• Názvy látek
• půda MeSH
• uhlík * MeSH

Forest areas infected by insects are increasing in Europe and North America due to accelerating climate change. A 2000-2020 mass budget study on major elements (C, N, P, Ca, Mg, K) in the atmosphere-plant-soil-water systems of two unmanaged catchments enabled us to evaluate changes in pools and fluxes related to tree dieback and long-term accumulation/losses during the post-glacial period. A bark-beetle outbreak killed >75 % of all trees in a mature mountain spruce forest in one catchment and all dead biomass was left on site. A similar forest in a nearby catchment was only marginally affected. We observed that: (1) the long-term (millennial) C and N accumulation in soils averaged 10-22 and 0.5-1.1 kg ha-1 yr-1, respectively, while losses of Ca, Mg, and K from soils ranged from 0.1 to 2.6 kg ha-1 yr-1. (2) Only <0.8 % and <1.5 % of the respective total C and N fluxes entering the soil annually from vegetation were permanently stored in soils. (3) The post-disturbance decomposition of dead tree biomass reduced vegetation element pools from 27 % (C) to 73 % (P) between 2004 and 2019. (4) Tree dieback decreased net atmospheric element inputs to the impacted catchment, and increased the leaching of all elements and gaseous losses of C (∼2.3 t ha-1 yr-1) and N (∼14 kg ha-1 yr-1). The disturbed catchment became a net C source, but ∼50 % of the N released from dead biomass accumulated in soils. (5) Despite the severe forest disturbance, the dissolved losses of Ca and Mg represented 52-58 % of their leaching from intact stands during the peaking atmospheric acidification from 1970 to 1990. (6) Disturbance-related net leaching of P, Ca, Mg, and K were 4, 69, 16, and 114 kg ha-1, respectively, which represented 7-38 % of the losses potentially related to sanitary logging and subsequent removal of the aboveground tree biomass.

• Klíčová slova
• Bark beetle, Base cations, Carbon, Nitrogen, Phosphorus,
• Publikační typ
• časopisecké články MeSH

Coniferous forests cover extensive areas of the boreal and temperate zones. Owing to their primary production and C storage, they have an important role in the global carbon balance. Forest disturbances such as forest fires, windthrows or insect pest outbreaks have a substantial effect on the functioning of these ecosystems. Recent decades have seen an increase in the areas affected by disturbances in both North America and Europe, with indications that this increase is due to both local human activity and global climate change. Here we examine the structural and functional response of the litter and soil microbial community in a Picea abies forest to tree dieback following an invasion of the bark beetle Ips typographus, with a specific focus on the fungal community. The insect-induced disturbance rapidly and profoundly changed vegetation and nutrient availability by killing spruce trees so that the readily available root exudates were replaced by more recalcitrant, polymeric plant biomass components. Owing to the dramatic decrease in photosynthesis, the rate of decomposition processes in the ecosystem decreased as soon as the one-time litter input had been processed. The fungal community showed profound changes, including a decrease in biomass (2.5-fold in the litter and 12-fold in the soil) together with the disappearance of fungi symbiotic with tree roots and a relative increase in saprotrophic taxa. Within the latter group, successive changes reflected the changing availability of needle litter and woody debris. Bacterial biomass appeared to be either unaffected or increased after the disturbance, resulting in a substantial increase in the bacterial/fungal biomass ratio.

• MeSH
• biomasa MeSH
• brouci fyziologie   MeSH
• houby klasifikace   izolace a purifikace   MeSH
• lesy * MeSH
• půdní mikrobiologie * MeSH
• smrk MeSH
• stromy MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH