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SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy
P. Křížek, T. Lukeš, M. Ovesný, K. Fliegel, GM. Hagen,
Language English Country England, Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
NLK
Free Medical Journals
from 1996 to 1 year ago
PubMed Central
from 2007
Open Access Digital Library
from 1996-01-01
Medline Complete (EBSCOhost)
from 1998-01-01
Oxford Journals Open Access Collection
from 1985-01-01 to 2022-09-30
Oxford Journals Open Access Collection
from 1985-01-01
ROAD: Directory of Open Access Scholarly Resources
from 1998
- MeSH
- Hep G2 Cells MeSH
- Fluorescence * MeSH
- Microscopy, Fluorescence methods MeSH
- Humans MeSH
- Actin Cytoskeleton ultrastructure MeSH
- Lighting methods MeSH
- Image Processing, Computer-Assisted MeSH
- Software * MeSH
- Imaging, Three-Dimensional methods MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
UNLABELLED: SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-friendly graphical interface and designed for processing two-dimensional and three-dimensional data acquired by structured illumination microscopy (SIM). Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination. AVAILABILITY AND IMPLEMENTATION: SIMToolbox, example data and the online documentation are freely accessible at http://mmtg.fel.cvut.cz/SIMToolbox. CONTACT: ghagen@uccs.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
References provided by Crossref.org
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