-
Something wrong with this record ?
A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance
F. Wan, C. Yin, R. Tang, M. Chen, Q. Wu, C. Huang, W. Qian, O. Rota-Stabelli, N. Yang, S. Wang, G. Wang, G. Zhang, J. Guo, LA. Gu, L. Chen, L. Xing, Y. Xi, F. Liu, K. Lin, M. Guo, W. Liu, K. He, R. Tian, E. Jacquin-Joly, P. Franck, M. Siegwart,...
Language English Country Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
Persistent link
https://www.medvik.cz/link/bmc20005894
Online
Full text
NLK
Directory of Open Access Journals
from 2015
Free Medical Journals
from 2010
Nature Open Access
from 2010-12-01
PubMed Central
from 2012
Europe PubMed Central
from 2012
ProQuest Central
from 2010-01-01
Open Access Digital Library
from 2015-01-01
Open Access Digital Library
from 2015-01-01
Medline Complete (EBSCOhost)
from 2012-11-01
Health & Medicine (ProQuest)
from 2010-01-01
ROAD: Directory of Open Access Scholarly Resources
from 2010
Springer Nature OA/Free Journals
from 2010-12-01
- MeSH
- Chromosomes, Insect genetics MeSH
- Gene Duplication MeSH
- Pheromones metabolism MeSH
- Genome, Insect MeSH
- Insect Proteins genetics metabolism MeSH
- Insecticides pharmacology MeSH
- Polymorphism, Single Nucleotide MeSH
- Moths drug effects genetics metabolism MeSH
- Promoter Regions, Genetic MeSH
- Receptors, Odorant genetics metabolism MeSH
- Insecticide Resistance * MeSH
- Animals MeSH
- Check Tag
- Animals MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
The codling moth Cydia pomonella, a major invasive pest of pome fruit, has spread around the globe in the last half century. We generated a chromosome-level scaffold assembly including the Z chromosome and a portion of the W chromosome. This assembly reveals the duplication of an olfactory receptor gene (OR3), which we demonstrate enhances the ability of C. pomonella to exploit kairomones and pheromones in locating both host plants and mates. Genome-wide association studies contrasting insecticide-resistant and susceptible strains identify hundreds of single nucleotide polymorphisms (SNPs) potentially associated with insecticide resistance, including three SNPs found in the promoter of CYP6B2. RNAi knockdown of CYP6B2 increases C. pomonella sensitivity to two insecticides, deltamethrin and azinphos methyl. The high-quality genome assembly of C. pomonella informs the genetic basis of its invasiveness, suggesting the codling moth has distinctive capabilities and adaptive potential that may explain its worldwide expansion.
College of Biological and Environmental Engineering Zhejiang Shuren University Hangzhou 310015 China
College of Plant Protection Nanjing Agricultural University Nanjing 210095 China
Ecology and Evolutionary Biology University of Kansas Lawrence KS 66046 USA
INRA Institute of Ecology and Environmental Sciences of Paris 78000 Versailles France
INRA Plantes et Systèmes de culture Horticole 228 route de l'Aérodrome 84914 Avignon Cedex 09 France
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc20005894
- 003
- CZ-PrNML
- 005
- 20200518132153.0
- 007
- ta
- 008
- 200511s2019 xxk f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1038/s41467-019-12175-9 $2 doi
- 035 __
- $a (PubMed)31530873
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xxk
- 100 1_
- $a Wan, Fanghao $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. wanfanghao@caas.cn. Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. wanfanghao@caas.cn.
- 245 12
- $a A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance / $c F. Wan, C. Yin, R. Tang, M. Chen, Q. Wu, C. Huang, W. Qian, O. Rota-Stabelli, N. Yang, S. Wang, G. Wang, G. Zhang, J. Guo, LA. Gu, L. Chen, L. Xing, Y. Xi, F. Liu, K. Lin, M. Guo, W. Liu, K. He, R. Tian, E. Jacquin-Joly, P. Franck, M. Siegwart, L. Ometto, G. Anfora, M. Blaxter, C. Meslin, P. Nguyen, M. Dalíková, F. Marec, J. Olivares, S. Maugin, J. Shen, J. Liu, J. Guo, J. Luo, B. Liu, W. Fan, L. Feng, X. Zhao, X. Peng, K. Wang, L. Liu, H. Zhan, W. Liu, G. Shi, C. Jiang, J. Jin, X. Xian, S. Lu, M. Ye, M. Li, M. Yang, R. Xiong, JR. Walters, F. Li,
- 520 9_
- $a The codling moth Cydia pomonella, a major invasive pest of pome fruit, has spread around the globe in the last half century. We generated a chromosome-level scaffold assembly including the Z chromosome and a portion of the W chromosome. This assembly reveals the duplication of an olfactory receptor gene (OR3), which we demonstrate enhances the ability of C. pomonella to exploit kairomones and pheromones in locating both host plants and mates. Genome-wide association studies contrasting insecticide-resistant and susceptible strains identify hundreds of single nucleotide polymorphisms (SNPs) potentially associated with insecticide resistance, including three SNPs found in the promoter of CYP6B2. RNAi knockdown of CYP6B2 increases C. pomonella sensitivity to two insecticides, deltamethrin and azinphos methyl. The high-quality genome assembly of C. pomonella informs the genetic basis of its invasiveness, suggesting the codling moth has distinctive capabilities and adaptive potential that may explain its worldwide expansion.
- 650 _2
- $a zvířata $7 D000818
- 650 _2
- $a chromozomy hmyzu $x genetika $7 D059006
- 650 _2
- $a duplikace genu $7 D020440
- 650 _2
- $a genom hmyzu $7 D049750
- 650 _2
- $a hmyzí proteiny $x genetika $x metabolismus $7 D019476
- 650 12
- $a rezistence k insekticidům $7 D007305
- 650 _2
- $a insekticidy $x farmakologie $7 D007306
- 650 _2
- $a můry $x účinky léků $x genetika $x metabolismus $7 D009036
- 650 _2
- $a feromony $x metabolismus $7 D010675
- 650 _2
- $a jednonukleotidový polymorfismus $7 D020641
- 650 _2
- $a promotorové oblasti (genetika) $7 D011401
- 650 _2
- $a receptory pachové $x genetika $x metabolismus $7 D018035
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Yin, Chuanlin $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Tang, Rui $u MARA-CABI Joint Laboratory for Bio-safety, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
- 700 1_
- $a Chen, Maohua $u Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China.
- 700 1_
- $a Wu, Qiang $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Huang, Cong $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Protection, Hunan Agricultural University, Changsha, 410128, China.
- 700 1_
- $a Qian, Wanqiang $u Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
- 700 1_
- $a Rota-Stabelli, Omar $u Department of Sustainable Agro-ecosystems and Bioresources, IASMA Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010, San Michele all'Adige (TN), Italy.
- 700 1_
- $a Yang, Nianwan $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. yangnianwan@caas.cn.
- 700 1_
- $a Wang, Shuping $u Technical Centre for Animal Plant and Food Inspection and Quarantine, Shanghai Custom, Shanghai, 200135, China.
- 700 1_
- $a Wang, Guirong $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Zhang, Guifen $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Guo, Jianyang $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Gu, Liuqi Aloy $u Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, 66046, USA.
- 700 1_
- $a Chen, Longfei $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Xing, Longsheng $u Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
- 700 1_
- $a Xi, Yu $u Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
- 700 1_
- $a Liu, Feiling $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Lin, Kejian $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Guo, Mengbo $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Liu, Wei $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a He, Kang $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Tian, Ruizheng $u Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China.
- 700 1_
- $a Jacquin-Joly, Emmanuelle $u INRA, Institute of Ecology and Environmental Sciences of Paris, 78000, Versailles, France.
- 700 1_
- $a Franck, Pierre $u INRA, Plantes et Systèmes de culture Horticole, 228 route de l'Aérodrome, 84914, Avignon Cedex 09, France.
- 700 1_
- $a Siegwart, Myriam $u INRA, Plantes et Systèmes de culture Horticole, 228 route de l'Aérodrome, 84914, Avignon Cedex 09, France.
- 700 1_
- $a Ometto, Lino $u Department of Sustainable Agro-ecosystems and Bioresources, IASMA Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010, San Michele all'Adige (TN), Italy. Department of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
- 700 1_
- $a Anfora, Gianfranco $u Department of Sustainable Agro-ecosystems and Bioresources, IASMA Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010, San Michele all'Adige (TN), Italy. Centre Agriculture Food Environment (C3A), University of Trento, 38010, San Michele all'Adige (TN), Italy.
- 700 1_
- $a Blaxter, Mark $u Edinburgh Genomics, and Institute of Evolutionary Biology, School of Biological Sciences, The King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JT, UK.
- 700 1_
- $a Meslin, Camille $u INRA, Institute of Ecology and Environmental Sciences of Paris, 78000, Versailles, France.
- 700 1_
- $a Nguyen, Petr $u Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branišovská 31, 37005, České Budějovice, Czech Republic. Faculty of Science, University of South Bohemia, Branišovská 1760, 37005, České Budějovice, Czech Republic.
- 700 1_
- $a Dalíková, Martina $u Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branišovská 31, 37005, České Budějovice, Czech Republic. Faculty of Science, University of South Bohemia, Branišovská 1760, 37005, České Budějovice, Czech Republic.
- 700 1_
- $a Marec, František $u Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branišovská 31, 37005, České Budějovice, Czech Republic.
- 700 1_
- $a Olivares, Jérôme $u INRA, Plantes et Systèmes de culture Horticole, 228 route de l'Aérodrome, 84914, Avignon Cedex 09, France.
- 700 1_
- $a Maugin, Sandrine $u INRA, Plantes et Systèmes de culture Horticole, 228 route de l'Aérodrome, 84914, Avignon Cedex 09, France.
- 700 1_
- $a Shen, Jianru $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Liu, Jinding $u College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
- 700 1_
- $a Guo, Jinmeng $u College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China.
- 700 1_
- $a Luo, Jiapeng $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Liu, Bo $u Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
- 700 1_
- $a Fan, Wei $u Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
- 700 1_
- $a Feng, Likai $u Institute of Plant Protection, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi, 832000, China.
- 700 1_
- $a Zhao, Xianxin $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Peng, Xiong $u Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China.
- 700 1_
- $a Wang, Kang $u Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China.
- 700 1_
- $a Liu, Lang $u Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China.
- 700 1_
- $a Zhan, Haixia $u MARA-CABI Joint Laboratory for Bio-safety, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Liu, Wanxue $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Shi, Guoliang $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
- 700 1_
- $a Jiang, Chunyan $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
- 700 1_
- $a Jin, Jisu $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Protection, Hunan Agricultural University, Changsha, 410128, China.
- 700 1_
- $a Xian, Xiaoqing $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
- 700 1_
- $a Lu, Sha $u State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
- 700 1_
- $a Ye, Mingli $u College of Biological and Environmental Engineering, Zhejiang Shuren University, Hangzhou, 310015, China.
- 700 1_
- $a Li, Meizhen $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
- 700 1_
- $a Yang, Minglu $u Xinjiang Production & Construction Corps Key Laboratory of Integrated Pest Management on Agriculture in South Xinjiang, Tarim University, Alar, 843300, China.
- 700 1_
- $a Xiong, Renci $u Xinjiang Production & Construction Corps Key Laboratory of Integrated Pest Management on Agriculture in South Xinjiang, Tarim University, Alar, 843300, China.
- 700 1_
- $a Walters, James R $u Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, 66046, USA. jrwalters@ku.edu.
- 700 1_
- $a Li, Fei $u Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China. lifei18@zju.edu.cn.
- 773 0_
- $w MED00184850 $t Nature communications $x 2041-1723 $g Roč. 10, č. 1 (2019), s. 4237
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/31530873 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20200511 $b ABA008
- 991 __
- $a 20200518132152 $b ABA008
- 999 __
- $a ok $b bmc $g 1524752 $s 1095950
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2019 $b 10 $c 1 $d 4237 $e 20190917 $i 2041-1723 $m Nature communications $n Nat Commun $x MED00184850
- LZP __
- $a Pubmed-20200511
