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A novel mitovirus detected in Diaporthe rudis, a fungus associated with Phomopsis dieback on grapevines
M. Kocanová, A. Eichmeier, L. Botella,
Jazyk angličtina Země Rakousko
Typ dokumentu časopisecké články
Grantová podpora
CZ.02.1.01/0.0/0.0/15_003/0000453
Phytophthora Research Centre
IGA-ZF/2020-DP008
Internal Grant Agency of MENDELU
NLK
ProQuest Central
od 2002-01-01 do Před 1 rokem
Medline Complete (EBSCOhost)
od 2000-01-01 do Před 1 rokem
Health & Medicine (ProQuest)
od 2002-01-01 do Před 1 rokem
Public Health Database (ProQuest)
od 2002-01-01 do Před 1 rokem
- MeSH
- délka genomu MeSH
- exprese genu MeSH
- fylogeneze * MeSH
- genom virový * MeSH
- mykoviry klasifikace genetika izolace a purifikace MeSH
- nemoci rostlin mikrobiologie MeSH
- otevřené čtecí rámce MeSH
- RNA-dependentní RNA-polymerasa genetika MeSH
- Saccharomycetales virologie MeSH
- sekvenování celého genomu MeSH
- virové proteiny genetika MeSH
- Vitis mikrobiologie MeSH
- Publikační typ
- časopisecké články MeSH
The genome sequence of a mitovirus found in an isolate of Diaporthe rudis, one of the causal agents of Phomopsis dieback on grapevines, was determined by two high-throughput sequencing approaches, small RNA and total RNA sequencing. The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).
Citace poskytuje Crossref.org
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- $a The genome sequence of a mitovirus found in an isolate of Diaporthe rudis, one of the causal agents of Phomopsis dieback on grapevines, was determined by two high-throughput sequencing approaches, small RNA and total RNA sequencing. The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).
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