• Je něco špatně v tomto záznamu ?

Disclosing quantitative RT-PCR raw data during manuscript submission: a call for action

A. Untergasser, J. Hellemans, MW. Pfaffl, JM. Ruijter, MJB. van den Hoff, MP. Dragomir, D. Adamoski, SMG. Dias, RM. Reis, M. Ferracin, E. Dias-Neto, I. Marsh, M. Kubista, M. Fabbri, A. Goel, O. Slabý, E. Knutsen, B. Chen, M. Negrini, K. Mimori,...

. 2023 ; 17 (5) : 713-717. [pub] 20230327

Jazyk angličtina Země Spojené státy americké

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/bmc23011574

Accuracy and transparency of scientific data are becoming more and more relevant with the increasing concern regarding the evaluation of data reproducibility in many research areas. This concern is also true for quantifying coding and noncoding RNAs, with the remarkable increase in publications reporting RNA profiling and sequencing studies. To address the problem, we propose the following recommendations: (a) accurate documentation of experimental procedures in Materials and methods (and not only in the supplementary information, as many journals have a strict mandate for making Materials and methods as visible as possible in the main text); (b) submission of RT-qPCR raw data for all experiments reported; and (c) adoption of a unified, simple format for submitted RT-qPCR raw data. The Real-time PCR Data Essential Spreadsheet Format (RDES) was created for this purpose.

B's PT Government Associate Laboratory Braga Guimarães Portugal

Berlin Institute of Health Germany

Brazilian Biosciences National Laboratory Campinas Brazil

CellCarta Zwijnaarde Belgium

Center for Cancer and Immunology Research Children's National Hospital Washington DC USA

City of Hope Comprehensive Cancer Center Duarte CA USA

Department of Biology Faculty of Medicine Central European Institute of Technology Masaryk University Brno Czech Republic

Department of Biomolecular Medicine Ghent University Belgium

Department of Comprehensive Cancer Care Masaryk Memorial Cancer Institute Brno Czech Republic

Department of Medical and Surgical Sciences University of Bologna Italy

Department of Medical Biology Amsterdam UMC location AMC University of Amsterdam The Netherlands

Department of Medical Biology Faculty of Health Sciences UiT The Arctic University of Norway Tromsø Norway

Department of Molecular Diagnostics and Experimental Therapeutics Beckman Research Institute of City of Hope Monrovia CA USA

Department of Pharmaceutics University of Florida College of Pharmacy Gainesville FL USA

Department of Radiation Oncology State Key Laboratory of Oncology in South China Collaborative Innovation Center for Cancer Medicine Sun Yat sen University Cancer Center Guangzhou China

Department of Surgery Kyushu University Beppu Hospital Japan

Department of Translational Molecular Pathology The University of Texas MD Anderson Cancer Center Houston TX USA

Division of Animal Physiology and Immunology School of Life Sciences Weihenstephan Technical University of Munich Freising Germany

Division of Oncology Department of Internal Medicine Medical University of Graz Austria

Editorial Manager Molecular Oncology Cambridge UK

Genomics Core Facility European Molecular Biology Laboratory Heidelberg Germany

German Cancer Research Center Heidelberg Germany

Institute of Biotechnology CAS v v i Vestec Czech Republic

Institute of Pathology Berlin Institute of Health Charité Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin Humboldt Universität zu Berlin Germany

IRCCS Azienda Ospedaliero Universitaria di Bologna Italy

Laboratory for Technologies of Advanced Therapies Department of Morphology Surgery and Experimental Medicine University of Ferrara Italy

Laboratory of Medical Genomics Centro Internacional de Pesquisa AC Camargo Cancer Center São Paulo Brazil

Laboratory of Neurosciences Institute of Psychiatry Faculdade de Medicina Universidade de São Paulo Brazil

Life and Health Sciences Research Institute School of Health Sciences University of Minho Braga Portugal

Medical Technology Research Centre Anglia Ruskin University Chelmsford Essex UK

Molecular Oncology Research Center Barretos Cancer Hospital Brazil

National Measurement Laboratory LGC Teddington UK

New South Wales Department of Primary Industries Elizabeth Macarthur Agricultural Institute Narellan Australia

OncoRNALab Cancer Research Institute Ghent Belgium

School of Biosciences and Medicine Faculty of Health and Medical Sciences University of Surrey Guildford UK

TATAA Biocenter AB Göteborg Sweden

The Center for Non codingRNAs University of Texas MD Anderson Cancer Center Houston TX USA

Translational Oncology University Hospital of Augsburg Stenglinstrasse Germany

Zentrum für Molekulare Biologie der Universität Heidelberg Germany

Citace poskytuje Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc23011574
003      
CZ-PrNML
005      
20230801133143.0
007      
ta
008      
230718s2023 xxu f 000 0|eng||
009      
AR
024    7_
$a 10.1002/1878-0261.13418 $2 doi
035    __
$a (PubMed)36916500
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a xxu
100    1_
$a Untergasser, Andreas $u Zentrum für Molekulare Biologie der Universität Heidelberg, Germany $u Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
245    10
$a Disclosing quantitative RT-PCR raw data during manuscript submission: a call for action / $c A. Untergasser, J. Hellemans, MW. Pfaffl, JM. Ruijter, MJB. van den Hoff, MP. Dragomir, D. Adamoski, SMG. Dias, RM. Reis, M. Ferracin, E. Dias-Neto, I. Marsh, M. Kubista, M. Fabbri, A. Goel, O. Slabý, E. Knutsen, B. Chen, M. Negrini, K. Mimori, M. Pichler, M. Papatriantafyllou, S. Anfossi, TD. Schmittgen, J. Huggett, S. Bustin, J. Vandesompele, GA. Calin, HEROIC (tHe initiativE gRoup On qRT dIsClosure) Consortium
520    9_
$a Accuracy and transparency of scientific data are becoming more and more relevant with the increasing concern regarding the evaluation of data reproducibility in many research areas. This concern is also true for quantifying coding and noncoding RNAs, with the remarkable increase in publications reporting RNA profiling and sequencing studies. To address the problem, we propose the following recommendations: (a) accurate documentation of experimental procedures in Materials and methods (and not only in the supplementary information, as many journals have a strict mandate for making Materials and methods as visible as possible in the main text); (b) submission of RT-qPCR raw data for all experiments reported; and (c) adoption of a unified, simple format for submitted RT-qPCR raw data. The Real-time PCR Data Essential Spreadsheet Format (RDES) was created for this purpose.
650    _2
$a lidé $7 D006801
650    _2
$a polymerázová řetězová reakce s reverzní transkripcí $7 D020133
650    _2
$a reprodukovatelnost výsledků $7 D015203
650    12
$a RNA $7 D012313
650    _2
$a kvantitativní polymerázová řetězová reakce $x metody $7 D060888
655    _2
$a časopisecké články $7 D016428
655    _2
$a práce podpořená grantem $7 D013485
700    1_
$a Hellemans, Jan $u CellCarta, Zwijnaarde, Belgium
700    1_
$a Pfaffl, Michael W $u Division of Animal Physiology and Immunology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany
700    1_
$a Ruijter, Jan M $u Department of Medical Biology, Amsterdam UMC, location AMC, University of Amsterdam, The Netherlands
700    1_
$a van den Hoff, Maurice J B $u Department of Medical Biology, Amsterdam UMC, location AMC, University of Amsterdam, The Netherlands
700    1_
$a Dragomir, Mihnea P $u Institute of Pathology, Berlin Institute of Health, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Germany $u Berlin Institute of Health, Germany $u German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK), Heidelberg, Germany
700    1_
$a Adamoski, Douglas $u Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil
700    1_
$a Dias, Sandra Martha Gomes $u Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil
700    1_
$a Reis, Rui Manuel $u Molecular Oncology Research Center, Barretos Cancer Hospital, Brazil $u Life and Health Sciences Research Institute (ICVS), School of Health Sciences, University of Minho, Braga, Portugal $u 3B's-PT Government Associate Laboratory, Braga/Guimarães, Portugal $1 https://orcid.org/0000000296397940
700    1_
$a Ferracin, Manuela $u Department of Medical and Surgical Sciences (DIMEC), University of Bologna, Italy $u IRCCS Azienda Ospedaliero-Universitaria di Bologna, Italy $1 https://orcid.org/0000000215956887
700    1_
$a Dias-Neto, Emmanuel $u Laboratory of Medical Genomics, Centro Internacional de Pesquisa, AC Camargo Cancer Center, São Paulo, Brazil $u Laboratory of Neurosciences (LIM27), Institute of Psychiatry, Faculdade de Medicina, Universidade de São Paulo, Brazil
700    1_
$a Marsh, Ian $u New South Wales Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Narellan, Australia
700    1_
$a Kubista, Mikael $u TATAA Biocenter AB, Göteborg, Sweden $u Institute of Biotechnology CAS, v. v. i., Vestec, Czech Republic
700    1_
$a Fabbri, Muller $u Center for Cancer and Immunology Research, Children's National Hospital, Washington, DC, USA
700    1_
$a Goel, Ajay $u Department of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, CA, USA $u City of Hope Comprehensive Cancer Center, Duarte, CA, USA $1 https://orcid.org/0000000313966341
700    1_
$a Slabý, Ondřej $u Department of Biology, Faculty of Medicine, Central European Institute of Technology, Masaryk University, Brno, Czech Republic $u Department of Comprehensive Cancer Care, Masaryk Memorial Cancer Institute, Brno, Czech Republic
700    1_
$a Knutsen, Erik $u Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, Tromsø, Norway $1 https://orcid.org/0000000249030150
700    1_
$a Chen, Baoqing $u Department of Radiation Oncology, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, China
700    1_
$a Negrini, Massimo $u Laboratory for Technologies of Advanced Therapies (LTTA), Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, Italy
700    1_
$a Mimori, Koshi $u Department of Surgery, Kyushu University Beppu Hospital, Japan
700    1_
$a Pichler, Martin $u Division of Oncology, Department of Internal Medicine, Medical University of Graz, Austria $u Translational Oncology, University Hospital of Augsburg Stenglinstrasse, Germany
700    1_
$a Papatriantafyllou, Maria $u Editorial Manager, Molecular Oncology, Cambridge, UK
700    1_
$a Anfossi, Simone $u Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
700    1_
$a Schmittgen, Thomas D $u Department of Pharmaceutics, University of Florida College of Pharmacy, Gainesville, FL, USA
700    1_
$a Huggett, Jim $u National Measurement Laboratory, LGC, Teddington, UK $u School of Biosciences and Medicine, Faculty of Health and Medical Sciences, University of Surrey, Guildford, UK
700    1_
$a Bustin, Stephen $u Medical Technology Research Centre, Anglia Ruskin University, Chelmsford, Essex, UK
700    1_
$a Vandesompele, Jo $u CellCarta, Zwijnaarde, Belgium $u Department of Biomolecular Medicine, Ghent University, Belgium $u OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium
700    1_
$a Calin, George A $u Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA $u The Center for Non-codingRNAs, University of Texas MD Anderson Cancer Center, Houston, TX, USA $1 https://orcid.org/0000000274270578
710    2_
$a HEROIC (tHe initiativE gRoup On qRT dIsClosure) Consortium
773    0_
$w MED00167281 $t Molecular oncology $x 1878-0261 $g Roč. 17, č. 5 (2023), s. 713-717
856    41
$u https://pubmed.ncbi.nlm.nih.gov/36916500 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y p $z 0
990    __
$a 20230718 $b ABA008
991    __
$a 20230801133139 $b ABA008
999    __
$a ok $b bmc $g 1963791 $s 1197839
BAS    __
$a 3
BAS    __
$a PreBMC-MEDLINE
BMC    __
$a 2023 $b 17 $c 5 $d 713-717 $e 20230327 $i 1878-0261 $m Molecular oncology $n Mol Oncol $x MED00167281
LZP    __
$a Pubmed-20230718

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...