Proline zwitterion dynamics in solution, glass, and crystalline state
Jazyk angličtina Země Spojené státy americké Médium print
Typ dokumentu srovnávací studie, časopisecké články, práce podpořená grantem
PubMed
17031958
DOI
10.1021/ja062958l
Knihovny.cz E-zdroje
- MeSH
- algoritmy MeSH
- deuterium chemie MeSH
- ionty chemie MeSH
- krystalizace MeSH
- molekulární konformace MeSH
- peptidy chemie MeSH
- počítačová simulace MeSH
- povrchové vlastnosti MeSH
- prolin chemie MeSH
- proteiny chemie MeSH
- Ramanova spektroskopie MeSH
- rozpouštědla chemie MeSH
- roztoky chemie MeSH
- sklo chemie MeSH
- teplota MeSH
- voda chemie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- srovnávací studie MeSH
- Názvy látek
- deuterium MeSH
- ionty MeSH
- peptidy MeSH
- prolin MeSH
- proteiny MeSH
- rozpouštědla MeSH
- roztoky MeSH
- voda MeSH
Raman and Raman optical activity spectra of L- and D-proline zwitterionic (PROZW) forms were recorded for H(2)O and D(2)O solutions in a wide frequency range and analyzed with respect to the motion of the proline ring and rotation of the carbonyl group. The solution spectra were additionally compared to Raman scattering of glass and crystalline powder proline. Solution and glass spectral band broadenings are similar and reveal information about the extent of internal molecular motion. Two distinct but equally populated flexible forms were found in the glass and the solution. The equal population is consistent with NMR data, temperature, and concentration dependencies. The molecular flexibility is reduced significantly in the crystal, however, where only one conformer is present. Consequently, the crystal bands are narrow and exhibit minor frequency shifts. The spectra were interpreted with the aid of density functional theory computations involving both continuum and explicit solvent. A two-dimensional potential energy surface pertaining to the five-member ring puckering coordinates was constructed and used for dynamical averaging of spectral properties. Comparison of the computed and experimental bandwidths suggests that the puckering is strongly correlated with the carbonyl rotation. An averaging over these two motions produces similar results. The interpretation of the Raman experiments with the aid of the simulation techniques also indicates that the environment modulates properties of the hydrophobic part of the molecule indirectly by interacting with the ionic group. Such behavior may be important for the reactivity and biological activity of proline-containing peptides and proteins.
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