Crystallization and initial X-ray diffraction studies of the flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from the soil bacterium Paracoccus denitrificans

. 2010 Apr 01 ; 66 (Pt 4) : 431-4. [epub] 20100331

Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid20383015

The flavin-dependent enzyme FerB from Paracoccus denitrificans reduces a broad range of compounds, including ferric complexes, chromate and most notably quinones, at the expense of the reduced nicotinamide adenine dinucleotide cofactors NADH or NADPH. Recombinant unmodified and SeMet-substituted FerB were crystallized under similar conditions by the hanging-drop vapour-diffusion method with microseeding using PEG 4000 as the precipitant. FerB crystallized in several different crystal forms, some of which diffracted to approximately 1.8 A resolution. The crystals of native FerB belonged to space group P2(1), with unit-cell parameters a = 61.6, b = 110.1, c = 65.2 A, beta = 118.2 degrees and four protein molecules in the asymmetric unit, whilst the SeMet-substituted form crystallized in space group P2(1)2(1)2, with unit-cell parameters a = 61.2, b = 89.2, c = 71.5 A and two protein molecules in the asymmetric unit. Structure determination by the three-wavelength MAD/MRSAD method is now in progress.

Zobrazit více v PubMed

Ackerley, D. F., Gonzalez, C. F., Park, C. H., Blake, R. II, Keyhan, M. & Matin, A. (2004). Appl. Environ. Microbiol.70, 873–882. PubMed PMC

Agarwal, R., Bonanno, J. B., Burley, S. K. & Swaminathan, S. (2006). Acta Cryst. D62, 383–391. PubMed PMC

Baker, S. C., Ferguson, S. J., Ludwig, B., Page, M. D., Richter, O. M. & van Spanning, R. J. (1998). Microbiol. Mol. Biol. Rev.62, 1046–1078. PubMed PMC

Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760–763. PubMed

Gonzalez, C. F., Ackerley, D. F., Lynch, S. V. & Matin, A. (2005). J. Biol. Chem.280, 22590–22595. PubMed

Howell, P. L. & Smith, G. D. (1992). J. Appl. Cryst.25, 81–86.

Kabsch, W. (1993). J. Appl. Cryst.26, 795–800.

Lowry, O. H., Rosebrough, N. J., Farr, A. L. & Randall, R. J. (1951). J. Biol. Chem.193, 265–275. PubMed

Mattevi, A. (2006). Trends Biochem. Sci.31, 276–283. PubMed

Matthews, B. W. (1968). J. Mol. Biol.33, 491–497. PubMed

Mazoch, J., Tesařík, R., Sedláček, V., Kučera, I. & Turánek, J. (2004). Eur. J. Biochem.271, 553–562. PubMed

Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449–457. PubMed

Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2009). Acta Cryst. D65, 1089–1097. PubMed PMC

Park, C. H., Keyhan, M., Wielinga, B., Fendorf, S. & Matin, A. (2000). Appl. Environ. Microbiol.66, 1788–1795. PubMed PMC

Pearson, W. R. & Lipman, D. J. (1988). Proc. Natl Acad. Sci. USA, 85, 2444–2448. PubMed PMC

Ross, D., Kepa, J. K., Winski, S. L., Beall, H. D., Anwar, A. & Siegel, D. (2000). Chem. Biol. Interact.129, 77–97. PubMed

Sedláček, V., van Spanning, R. J. M. & Kučera, I. (2009a). Microbiology, 155, 1294–1301. PubMed

Sedláček, V., van Spanning, R. J. M. & Kučera, I. (2009b). Arch. Biochem. Biophys.483, 29–36. PubMed

Sollner, S. & Macheroux, P. (2009). FEBS J.276, 4313–4324. PubMed

Sollner, S., Neubauer, R., Ehammer, H., Prem, A., Deller, S., Palfey, B. A., Daum, G. & Macheroux, P. (2007). FEBS J.274, 1328–1339. PubMed

Sparla, F., Tedeschi, G., Pupilo, P. & Trost, P. (1999). FEBS Lett.463, 382–386. PubMed

Tesařík, R., Sedláček, V., Plocková, J., Wimmerová, M., Turánek, J. & Kučera, I. (2009). Protein Expr. Purif.68, 233–238. PubMed

Van Duyne, G. D., Standaert, R., Karplus, P. A., Schreiber, S. L. & Clardy, J. (1993). J. Mol. Biol.229, 105–124. PubMed

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...