Gene replacement techniques for Escherichia coli genome modification
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't, Review
- MeSH
- Bacteriophage lambda genetics MeSH
- Escherichia coli genetics MeSH
- Genetic Engineering methods MeSH
- Genome, Bacterial * MeSH
- Gene Targeting methods MeSH
- Gene Transfer Techniques MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Review MeSH
The subject of this review covers modern experimental procedures for chromosomal gene replacement in Escherichia coli and related bacteria, which enable the specific substitution of targeted genome sequences with copies of those carrying defined mutations. Two principal methods for gene replacement were established. The first "in-out" method is based on integration of plasmid into bacterial chromosome and subsequent resolving of the cointegrate. The "linear fragment" method (recombineering) is based on homologous recombination mediated by short homology arms at the ends of linear DNA molecule. Many new protocols and improvements in targeted gene replacement were introduced during the last 10 years. These methods are well suited for high-throughput functional gene studies and for many biotechnological applications.
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Folia Microbiol (Praha). 1999;44(6):625-8 PubMed
BMC Mol Biol. 2003 Dec 13;4:11 PubMed
J Bacteriol. 1998 Apr;180(8):2063-71 PubMed
PLoS One. 2008;3(12):e3957 PubMed
Appl Environ Microbiol. 2010 Aug;76(15):5188-98 PubMed
J Microbiol Methods. 2008 Oct;75(2):359-61 PubMed
Proc Natl Acad Sci U S A. 1983 Aug;80(16):4894-8 PubMed
J Bacteriol. 1997 Oct;179(20):6228-37 PubMed
Appl Environ Microbiol. 2006 Apr;72(4):2520-5 PubMed
Virology. 2004 Feb 20;319(2):185-9 PubMed
Biotechniques. 2005 Mar;38(3):405-8 PubMed
EMBO Rep. 2000 Sep;1(3):239-43 PubMed
Gene. 2000 Apr 18;247(1-2):255-64 PubMed
Mol Biotechnol. 2009 May;42(1):110-6 PubMed
Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1626-31 PubMed
Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):15264-9 PubMed
Gene. 2000 Apr 4;246(1-2):321-30 PubMed
Gene. 2003 Jun 5;311:153-63 PubMed
Appl Environ Microbiol. 2009 Mar;75(6):1575-80 PubMed
Biotechniques. 2006 Feb;40(2):191-7 PubMed
FEMS Immunol Med Microbiol. 2006 Aug;47(3):462-9 PubMed
Mol Syst Biol. 2006;2:2006.0008 PubMed
Annu Rev Genet. 2002;36:361-88 PubMed
Mol Microbiol. 2005 Jan;55(1):137-49 PubMed
BMC Mol Biol. 2009 Apr 23;10:34 PubMed
Proc Natl Acad Sci U S A. 2000 May 23;97(11):5978-83 PubMed
Genesis. 2001 Jan;29(1):14-21 PubMed
World J Microbiol Biotechnol. 2010 Jul;26(7):1323-9 PubMed
Nucleic Acids Res. 2010 Apr;38(6):e92 PubMed
Infect Immun. 2008 Feb;76(2):612-22 PubMed
Mol Microbiol. 2010 Jan;75(1):138-48 PubMed
Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6640-5 PubMed
J Bacteriol. 1989 Sep;171(9):4617-22 PubMed
Genomics. 2001 Apr 1;73(1):56-65 PubMed
Microb Cell Fact. 2008 Apr 24;7:14 PubMed
Microbiol Rev. 1994 Sep;58(3):401-65 PubMed
J Bacteriol. 2004 Aug;186(15):4921-30 PubMed
Nucleic Acids Res. 1994 Jun 25;22(12):2392-8 PubMed
Nucleic Acids Res. 2008 Aug;36(14):e84 PubMed
Nat Rev Microbiol. 2008 Nov;6(11):851-7 PubMed
Appl Environ Microbiol. 2010 Aug;76(15):4960-8 PubMed
Nucleic Acids Res. 2005 Feb 24;33(4):e36 PubMed
Genome Res. 2002 Apr;12(4):640-7 PubMed
Nucleic Acids Res. 2008 Jan;36(1):e4 PubMed
Methods Enzymol. 1991;194:281-301 PubMed
FEMS Microbiol Lett. 2004 May 15;234(2):325-31 PubMed
Nucleic Acids Res. 1999 Nov 15;27(22):4409-15 PubMed
BMC Mol Biol. 2006 Sep 19;7:31 PubMed
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6742-6 PubMed
Nat Genet. 1998 Oct;20(2):123-8 PubMed
EMBO J. 1995 Apr 3;14(7):1561-70 PubMed
BMC Microbiol. 2010 Aug 03;10:209 PubMed
Nucleic Acids Res. 2007;35(10):e78 PubMed
J Bacteriol. 1989 May;171(5):2609-13 PubMed
Science. 2006 May 19;312(5776):1044-6 PubMed
Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):216-21 PubMed
Can J Microbiol. 2007 Jan;53(1):56-62 PubMed
BMC Microbiol. 2009 Dec 09;9:252 PubMed
J Bacteriol. 2002 Aug;184(16):4573-81 PubMed
J Bacteriol. 2004 May;186(9):2673-81 PubMed
Nat Protoc. 2009;4(2):206-23 PubMed
Mol Gen Genet. 1996 Nov 27;253(1-2):217-24 PubMed
BMC Biotechnol. 2007 Sep 17;7:59 PubMed
Appl Environ Microbiol. 2010 Aug;76(15):5312-6 PubMed
Infect Immun. 2005 Mar;73(3):1598-605 PubMed
Folia Microbiol (Praha). 1998;43(6):589-99 PubMed
Proc Natl Acad Sci U S A. 1986 Dec;83(24):9645-9 PubMed