Betaproteobacterial genus Limnohabitans represents an important part of freshwater bacterioplankton. Here, we report genome sequences of two Limnohabitans isolates, Rim28 and Rim47. They contain a complete photosynthesis gene cluster, RuBisCO, CO dehydrogenase, ammonia monooxygenase, and sulfur-oxidizing genes, which indicates a great metabolic versatility of the Limnohabitans species.

Institute of Microbiology CAS Opatovický Mlýn Třeboň Czech Republic

Zobrazit více v PubMed

Aziz RK, et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. PubMed PMC

Goecks J, Nekrutenko A, Taylor J, Galaxy Team. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11:R86. PubMed PMC

Hahn MW, Kasalický V, Jezbera J, Brandt U, Šimek K. 2010. Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans. Int. J. Syst. Evol. Microbiol. 60:2946–2950 PubMed PMC

Horňák K, Zeder M, Blom JF, Posch T, Pernthaler J. 2012. Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp. Environ. Microbiol. 14:765–778 PubMed

Kasalický V. 2012. Ecophysiological characteristics of key members of Betaproteobacteria in freshwater bacterioplankton. Ph.D. thesis. University of South Bohemia, České Budějovice, Czech Republic

Kasalický V, Jezbera J, Šimek K, Hahn MW. 2010. Limnohabitans planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans. Int. J. Syst. Evol. Microbiol. 60:2710–2714 PubMed PMC

Šimek K, Kasalický V, Horňák K, Hahn MW, Weinbauer MG. 2010. Assessing niche separation among coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacteriovore. Appl. Environ. Microbiol. 76:1406–1416 PubMed PMC

Šimek K, et al. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster, representing a core group of the betaproteobacterial genus Limnohabitans. Appl. Environ. Microbiol. 76:631–639 PubMed PMC

Šimek K, Kasalický V, Zapomělová E, Horňák K. 2011. Alga-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Appl. Environ. Microbiol. 77:7307–7315 PubMed PMC

Šimek K, et al. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol. 67:2723–2733 PubMed PMC

Waidner LA, Kirchman DL. 2005. Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ. Microbiol. 7:1896–1908 PubMed

Zheng Q, et al. 2011. Diverse arrangement of photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria. PLoS One 6:e25050 doi:10.1371/journal.pone.0025050 PubMed DOI PMC

Zwart G, Crump BC, Agterveld MPKV, Hagen F, Han SK. 2002. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquatic Microb. Ecol. 28:141–155

Diel changes and diversity of pufM expression in freshwater communities of anoxygenic phototrophic bacteria

Cryptophyta as major bacterivores in freshwater summer plankton

Aerobic Anoxygenic Photosynthesis Is Commonly Present within the Genus Limnohabitans

The diversity of the Limnohabitans genus, an important group of freshwater bacterioplankton, by characterization of 35 isolated strains

Zobrazit více v PubMed

GENBANK
ALKN00000000, ALKO00000000