Bringing nitrilase sequences from databases to life: the search for novel substrate specificities with a focus on dinitriles
Jazyk angličtina Země Německo Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
26521240
DOI
10.1007/s00253-015-7023-1
PII: 10.1007/s00253-015-7023-1
Knihovny.cz E-zdroje
- Klíčová slova
- Arylacetonitrilases, Cyano acids, Dinitriles, Genome mining, Nitrilases,
- MeSH
- aminohydrolasy genetika metabolismus MeSH
- data mining MeSH
- Escherichia coli genetika metabolismus MeSH
- exprese genu MeSH
- klonování DNA MeSH
- nitrily metabolismus MeSH
- rekombinantní proteiny izolace a purifikace metabolismus MeSH
- substrátová specifita MeSH
- výpočetní biologie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- aminohydrolasy MeSH
- nitrilase MeSH Prohlížeč
- nitrily MeSH
- rekombinantní proteiny MeSH
The aim of this study was to discover new nitrilases with useful activities, especially towards dinitriles that are precursors of high-value cyano acids. Genes coding for putative nitrilases of different origins (fungal, plant, or bacterial) with moderate similarities to known nitrilases were selected by mining the GenBank database, synthesized artificially and expressed in Escherichia coli. The enzymes were purified, examined for their substrate specificities, and classified into subtypes (aromatic nitrilase, arylacetonitrilase, aliphatic nitrilase, cyanide hydratase) which were largely in accordance with those predicted from bioinformatic analysis. The catalytic potential of the nitrilases for dinitriles was examined with cyanophenyl acetonitriles, phenylenediacetonitriles, and fumaronitrile. The nitrilase activities and selectivities for dinitriles and the reaction products (cyano acid, cyano amide, diacid) depended on the enzyme subtype. At a preparative scale, all the examined dinitriles were hydrolyzed into cyano acids and fumaronitrile was converted to cyano amide using E. coli cells producing arylacetonitrilases and an aromatic nitrilase, respectively.
Department of Biochemistry Charles University Prague Hlavova 8 CZ 128 40 Prague Czech Republic
Institute of Microbiology Czech Academy of Sciences Vídeňská 1083 CZ 142 20 Prague Czech Republic
Citace poskytuje Crossref.org
Genetic and Functional Diversity of Nitrilases in Agaricomycotina