Development and evaluation of TaqMan real-time PCR assay for detection of beak and feather disease virus
Jazyk angličtina Země Nizozemsko Médium print-electronic
Typ dokumentu hodnotící studie, časopisecké články
PubMed
28263762
DOI
10.1016/j.jviromet.2017.02.017
PII: S0166-0934(16)30450-5
Knihovny.cz E-zdroje
- Klíčová slova
- Beak and feather disease virus (BFDV), Real-time PCR,
- MeSH
- Circovirus genetika izolace a purifikace MeSH
- diagnostické techniky molekulární metody MeSH
- DNA primery genetika MeSH
- infekce viry čeledi Circoviridae diagnóza veterinární virologie MeSH
- kvantitativní polymerázová řetězová reakce metody MeSH
- nemoci ptáků diagnóza virologie MeSH
- oligonukleotidové sondy genetika MeSH
- ptáci MeSH
- reprodukovatelnost výsledků MeSH
- senzitivita a specificita MeSH
- veterinární lékařství metody MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- hodnotící studie MeSH
- Názvy látek
- DNA primery MeSH
- oligonukleotidové sondy MeSH
Psittacine beak and feather disease (PBFD) is one of the most significant viral diseases in psittacine birds. The aim of the presented study was to develop a highly specific and sensitive TaqMan real-time PCR assay for universal detection of beak and feather disease virus (BFDV). Primers and a hydrolysis probe were selected on the highly conserved regions belonging to the ORF1 of the BFDV genome which were identified by aligning 814 genomic sequences downloaded from the GenBank database. The evaluation of the reaction parameters suggested a reaction efficiency of 97.1%, with consistent detection of 101 virus copies/μl of nucleic acid extract. The low values of standard deviation and coefficient of variation indicate a high degree of reproducibility and repeatability. The diagnostic applicability of the assay was proven on 36 BFDV positive and 107 negative specimens of psittacine origin representing 28 species. The assay showed a 100% ability to detect distinct genetic variants of the virus. Our data suggest that the presented TaqMan real-time PCR represents a specific, sensitive and reliable assay facilitating the molecular detection of BFDV.
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