Sorbitol-Fermenting Enterohemorrhagic Escherichia coli O157:H- Isolates from Czech Patients with Novel Plasmid Composition Not Previously Seen in German Isolates
Language English Country United States Media electronic-print
Document type Journal Article
PubMed
28970221
PubMed Central
PMC5691429
DOI
10.1128/aem.01454-17
PII: AEM.01454-17
Knihovny.cz E-resources
- Keywords
- EHEC O157, Sfp fimbriae, enterohemorrhagic E. coli, hemolytic-uremic syndrome, outbreaks, plasmid analysis,
- MeSH
- Escherichia coli O157 classification isolation & purification metabolism MeSH
- Virulence Factors genetics metabolism MeSH
- Fermentation MeSH
- Escherichia coli Infections microbiology MeSH
- Humans MeSH
- Plasmids genetics metabolism MeSH
- Escherichia coli Proteins genetics metabolism MeSH
- Sorbitol metabolism MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Geographicals
- Czech Republic MeSH
- Germany MeSH
- Names of Substances
- Virulence Factors MeSH
- Escherichia coli Proteins MeSH
- Sorbitol MeSH
Sorbitol-fermenting (SF) enterohemorrhagic Escherichia coli (EHEC) O157:H- strains, first identified in Germany, have emerged as important pathogens throughout Europe. Besides chromosomally encoded Shiga toxin 2a (the major virulence factor), several putative virulence loci, including the hly, etp, and sfp operons, encoding EHEC hemolysin, type II secretion system proteins, and Sfp fimbriae, respectively, are located on the 121-kb plasmid pSFO157 in German strains. Here we report novel SF EHEC O157:H- strains isolated from patients in the Czech Republic. These strains share the core genomes and chromosomal virulence loci encoding toxins (stx2a and the cdtV-ABC operon) and adhesins (eae-γ, efa1, lpfAO157OI-141, and lpfAO157OI-154) with German strains but differ essentially in their plasmids. In contrast to all previously detected SF EHEC O157:H- strains, the Czech strains carry two plasmids, of 79 kb and 86 kb. The 79-kb plasmid harbors the sfp operon, but neither of the plasmids contains the hly and etp operons. Sequence analyses demonstrated that the 79-kb plasmid (pSFO157 258/98-1) evolved from pSFO157 of German strains by deletion of a 41,534-bp region via homologous recombination, resulting in loss of the hly and etp operons. The 86-kb plasmid (pSFO157 258/98-2) displays 98% sequence similarity to a 92.7-kb plasmid of an extraintestinal pathogenic E. coli bloodstream isolate. Our finding of this novel plasmid composition in SF EHEC O157:H- strains extends the evolutionary history of EHEC O157 plasmids. Moreover, the unique molecular plasmid characteristics permit the identification of such strains, thereby facilitating further investigations of their geographic distribution, clinical significance, and epidemiology.IMPORTANCE Since their first identification in Germany in 1989, sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H- (nonmotile) strains have emerged as important causes of the life-threatening disease hemolytic-uremic syndrome in Europe. They account for 10 to 20% of sporadic cases of this disease and have caused several large outbreaks. The strains isolated throughout Europe share conserved chromosomal and plasmid characteristics. Here we identified novel sorbitol-fermenting enterohemorrhagic E. coli O157:H- patient isolates in the Czech Republic which differ from all such strains reported previously by their unique plasmid characteristics, including plasmid number, composition of plasmid-carried virulence genes, and plasmid origins. Our findings contribute substantially to understanding the evolution of E. coli O157 strains and their plasmids. In practical terms, they enable the identification of strains with these novel plasmid characteristics in patient stool samples and thus the investigation of their roles as human pathogens in other geographic areas.
See more in PubMed
Karch H, Wiss R, Gloning H, Emmrich P, Aleksić S, Bockemühl J. 1990. Hemolytic-uremic syndrome in infants due to verotoxin-producing Escherichia coli. Dtsch Med Wochenschr 115:489–495. doi:10.1055/s-2008-1065036. PubMed DOI
Karch H, Tarr PI, Bielaszewska M. 2005. Enterohaemorrhagic Escherichia coli in human medicine. Int J Med Microbiol 295:405–418. doi:10.1016/j.ijmm.2005.06.009. PubMed DOI
Bielaszewska M, Schmidt H, Liesegang A, Prager R, Rabsch W, Tschäpe H, Cízek A, Janda J, Bláhová K, Karch H. 2000. Cattle can be a reservoir of sorbitol-fermenting Shiga toxin-producing Escherichia coli O157:H− strains and a source of human diseases. J Clin Microbiol 38:3470–3473. PubMed PMC
Eklund M, Bielaszewska M, Nakari UM, Karch H, Siitonen A. 2006. Molecular and phenotypic profiling of sorbitol-fermenting Escherichia coli O157:H− human isolates from Finland. Clin Microbiol Infect 12:634–641. doi:10.1111/j.1469-0691.2006.01478.x. PubMed DOI
Jakubczak A, Szych J, Januszkiewicz K. 2008. Characterization of first sorbitol-fermenting Shiga toxin-producing Escherichia coli O157:H− strain isolated in Poland. Med Dosw Mikrobiol 60:173–181. PubMed
Orth D, Grif K, Dierich MP, Würzner R. 2006. Sorbitol-fermenting Shiga toxin-producing Escherichia coli O157: indications for an animal reservoir. Epidemiol Infect 134:719–723. doi:10.1017/S0950268805005467. PubMed DOI PMC
Buvens G, Piérard D, Hachimi-Idrissi S, Lauwers S. 2009. First sorbitol-fermenting verocytotoxin-producing Escherichia coli O157:H− isolated in Belgium. Acta Clin Belg 64:59–64. doi:10.1179/acb.2009.011. PubMed DOI
Pollock KG, Locking ME, Beattie TJ, Maxwell H, Ramage I, Hughes D, Cowieson J, Allison L, Hanson M, Cowden JM. 2010. Sorbitol-fermenting Escherichia coli O157, Scotland. Emerg Infect Dis 16:881–882. doi:10.3201/eid1605.091919. PubMed DOI PMC
Brandal LT, Løbersli I, Stavnes TL, Wester AL, Lindstedt BA. 2012. First report of the Shiga toxin 1 gene in sorbitol-fermenting Escherichia coli O157:H−. J Clin Microbiol 50:1825–1826. doi:10.1128/JCM.06435-11. PubMed DOI PMC
Marejková M, Bláhová K, Janda J, Fruth A, Petráš P. 2013. Enterohemorrhagic Escherichia coli as causes of hemolytic uremic syndrome in the Czech Republic. PLoS One 8:e73927. doi:10.1371/journal.pone.0073927. PubMed DOI PMC
Mellmann A, Bielaszewska M, Köck R, Friedrich AW, Fruth A, Middendorf B, Harmsen D, Schmidt MA, Karch H. 2008. Analysis of collection of hemolytic uremic syndrome-associated enterohemorrhagic Escherichia coli. Emerg Infect Dis 14:1287–1290. doi:10.3201/eid1408.071082. PubMed DOI PMC
Ammon A, Petersen LR, Karch H. 1999. A large outbreak of hemolytic uremic syndrome caused by an unusual sorbitol-fermenting strain of Escherichia coli O157:H−. J Infect Dis 179:1274–1277. doi:10.1086/314715. PubMed DOI
Alpers K, Werber D, Frank C, Koch J, Friedrich AW, Karch H, An DER, Heiden M, Prager R, Fruth A, Bielaszewska M, Morlock G, Heissenhuber A, Diedler A, Gerber A, Ammon A. 2009. Sorbitol-fermenting enterohaemorrhagic Escherichia coli O157:H− causes another outbreak of haemolytic uraemic syndrome in children. Epidemiol Infect 137:389–395. doi:10.1017/S0950268808001465. PubMed DOI
Nielsen S, Frank C, Fruth A, Spode A, Prager R, Graff A, Plenge-Bönig A, Loos S, Lütgehetmann M, Kemper MJ, Müller-Wiefel DE, Werber D. 2011. Desperately seeking diarrhoea: outbreak of haemolytic uraemic syndrome caused by emerging sorbitol-fermenting Shiga toxin-producing Escherichia coli O157:H−, Germany, 2009. Zoonoses Public Health 58:567–572. doi:10.1111/j.1863-2378.2011.01405.x. PubMed DOI
Rosser T, Dransfield T, Allison L, Hanson M, Holden N, Evans J, Naylor S, La Ragione R, Low JC, Gally DL. 2008. Pathogenic potential of emergent sorbitol-fermenting Escherichia coli O157:NM. Infect Immun 76:5598–5607. doi:10.1128/IAI.01180-08. PubMed DOI PMC
Haugum K, Lindstedt BA, Løbersli I, Kapperud G, Brandal LT. 2012. Identification of the anti-terminator qO111:H− gene in Norwegian sorbitol-fermenting Escherichia coli O157:NM. FEMS Microbiol Lett 329:102–110. doi:10.1111/j.1574-6968.2012.02505.x. PubMed DOI
King LA, Loukiadis E, Mariani-Kurkdjian P, Haeghebaert S, Weill FX, Baliere C, Ganet S, Gouali M, Vaillant V, Pihier N, Callon H, Novo R, Gaillot O, Thevenot-Sergentet D, Bingen E, Chaud P, de Valk H. 2014. Foodborne transmission of sorbitol-fermenting Escherichia coli O157:[H7] via ground beef: an outbreak in northern France, 2011. Clin Microbiol Infect 20:O1136–O1144. doi:10.1111/1469-0691.12736. PubMed DOI
Jaakkonen A, Salmenlinna S, Rimhanen-Finne R, Lundström H, Heinikainen S, Hakkinen M, Hallanvuo S. 2017. Severe outbreak of sorbitol-fermenting Escherichia coli O157 via unpasteurized milk and farm visits, Finland 2012. Zoonoses Public Health 64:468–475. doi:10.1111/zph.12327. PubMed DOI
Vygen-Bonnet S, Rosner B, Wilking H, Fruth A, Prager R, Kossow A, Lang C, Simon S, Seidel J, Faber M, Schielke A, Michaelis K, Holzer A, Kamphausen R, Kalhöfer D, Thole S, Mellmann A, Flieger A, Stark K. 2017. Ongoing haemolytic uraemic syndrome (HUS) outbreak caused by sorbitol-fermenting (SF) Shiga toxin-producing Escherichia coli (STEC) O157, Germany, December 2016 to May 2017. Euro Surveill 22:30541. doi:10.2807/1560-7917.ES.2017.22.21.30541. PubMed DOI PMC
Rangel JM, Sparling PH, Crowe C, Griffin PM, Swerdlow DL. 2005. Epidemiology of Escherichia coli O157:H7 outbreaks, United States, 1982–2002. Emerg Infect Dis 11:603–609. doi:10.3201/eid1104.040739. PubMed DOI PMC
Bielaszewska M, Sinha B, Kuczius T, Karch H. 2005. Cytolethal distending toxin from Shiga toxin-producing Escherichia coli O157 causes irreversible G2/M arrest, inhibition of proliferation, and death of human endothelial cells. Infect Immun 73:552–562. doi:10.1128/IAI.73.1.552-562.2005. PubMed DOI PMC
Müsken A, Bielaszewska M, Greune L, Schweppe CH, Müthing J, Schmidt H, Schmidt MA, Karch H, Zhang W. 2008. Anaerobic conditions promote expression of Sfp fimbriae and adherence of sorbitol-fermenting enterohemorrhagic Escherichia coli O157:NM to human intestinal epithelial cells. Appl Environ Microbiol 74:1087–1093. doi:10.1128/AEM.02496-07. PubMed DOI PMC
Janka A, Bielaszewska M, Dobrindt U, Greune L, Schmidt MA, Karch H. 2003. Cytolethal distending toxin gene cluster in enterohemorrhagic Escherichia coli O157:H− and O157:H7: characterization and evolutionary considerations. Infect Immun 71:3634–3638. doi:10.1128/IAI.71.6.3634-3638.2003. PubMed DOI PMC
Janka A, Bielaszewska M, Dobrindt U, Karch H. 2002. Identification and distribution of the enterohemorrhagic Escherichia coli factor for adherence (efa1) gene in sorbitol-fermenting Escherichia coli O157:H−. Int J Med Microbiol 292:207–214. doi:10.1078/1438-4221-00206. PubMed DOI
Bielaszewska M, Tarr PI, Karch H, Zhang W, Mathys W. 2005. Phenotypic and molecular analysis of tellurite resistance among enterohemorrhagic Escherichia coli O157:H7 and sorbitol-fermenting O157:NM clinical isolates. J Clin Microbiol 43:452–454. doi:10.1128/JCM.43.1.452-454.2005. PubMed DOI PMC
Friedrich AW, Köck R, Bielaszewska M, Zhang W, Karch H, Mathys W. 2005. Distribution of the urease gene cluster among and urease activities of enterohemorrhagic Escherichia coli O157 isolates from humans. J Clin Microbiol 43:546–550. doi:10.1128/JCM.43.2.546-550.2005. PubMed DOI PMC
Tarr PI, Bilge SS, Vary JC Jr, Jelacic S, Habeeb RL, Ward TR, Baylor MR, Besser TE. 2000. Iha: a novel Escherichia coli O157:H7 adherence-conferring molecule encoded on a recently acquired chromosomal island of conserved structure. Infect Immun 68:1400–1407. doi:10.1128/IAI.68.3.1400-1407.2000. PubMed DOI PMC
Shaikh N, Holt NJ, Johnson JR, Tarr PI. 2007. Fim operon variation in the emergence of enterohemorrhagic Escherichia coli: an evolutionary and functional analysis. FEMS Microbiol Lett 273:58–63. doi:10.1111/j.1574-6968.2007.00781.x. PubMed DOI
Uhlich GA, Keen JE, Elder RO. 2001. Mutations in the csgD promoter associated with variations in curli expression in certain strains of Escherichia coli O157:H7. Appl Environ Microbiol 67:2367–2370. doi:10.1128/AEM.67.5.2367-2370.2001. PubMed DOI PMC
Brunder W, Karch H, Schmidt H. 2006. Complete sequence of the large virulence plasmid pSFO157 of the sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H− strain 3072/96. Int J Med Microbiol 296:467–474. doi:10.1016/j.ijmm.2006.05.005. PubMed DOI
Rump LV, Meng J, Strain EA, Cao G, Allard MW, Gonzalez-Escalona N. 2012. Complete DNA sequence analysis of enterohemorrhagic Escherichia coli plasmid pO157_2 in β-glucuronidase-positive E. coli O157:H7 reveals a novel evolutionary path. J Bacteriol 194:3457–3463. doi:10.1128/JB.00197-12. PubMed DOI PMC
Burland V, Shao Y, Perna NT, Plunkett G, Sofia HJ, Blattner FR. 1998. The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7. Nucleic Acids Res 26:4196–4204. doi:10.1093/nar/26.18.4196. PubMed DOI PMC
Makino K, Ishii K, Yasunaga T, Hattori M, Yokoyama K, Yutsudo CH, Kubota Y, Yamaichi Y, Iida T, Yamamoto K, Honda T, Han CG, Ohtsubo E, Kasamatsu M, Hayashi T, Kuhara S, Shinagawa H. 1998. Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak. DNA Res 5:1–9. doi:10.1093/dnares/5.1.1. PubMed DOI
Schmidt H, Beutin L, Karch H. 1995. Molecular analysis of the plasmid-encoded hemolysin of Escherichia coli O157:H7 strain EDL 933. Infect Immun 63:1055–1061. PubMed PMC
Bielaszewska M, Rüter C, Kunsmann L, Greune L, Bauwens A, Zhang W, Kuczius T, Kim KS, Mellmann A, Schmidt MA, Karch H. 2013. Enterohemorrhagic Escherichia coli hemolysin employs outer membrane vesicles to target mitochondria and cause endothelial and epithelial apoptosis. PLoS Pathog 9:e1003797. doi:10.1371/journal.ppat.1003797. PubMed DOI PMC
Schmidt H, Henkel B, Karch H. 1997. A gene cluster closely related to type II secretion pathway operons of gram-negative bacteria is located on the large plasmid of enterohemorrhagic Escherichia coli O157 strains. FEMS Microbiol Lett 148:265–272. doi:10.1111/j.1574-6968.1997.tb10299.x. PubMed DOI
Brunder W, Khan AS, Hacker J, Karch H. 2001. Novel type of fimbriae encoded by the large plasmid of sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H−. Infect Immun 69:4447–4457. doi:10.1128/IAI.69.7.4447-4457.2001. PubMed DOI PMC
Friedrich AW, Zhang W, Bielaszewska M, Mellmann A, Köck R, Fruth A, Tschäpe H, Karch H. 2007. Prevalence, virulence profiles, and clinical significance of Shiga toxin-negative variants of enterohemorrhagic Escherichia coli O157 infection in humans. Clin Infect Dis 45:39–45. doi:10.1086/518573. PubMed DOI
Yu J, Kaper JB. 1992. Cloning and characterization of the eae gene of enterohaemorrhagic Escherichia coli O157:H7. Mol Microbiol 6:411–417. doi:10.1111/j.1365-2958.1992.tb01484.x. PubMed DOI
Torres AG, Giron JA, Perna NT, Burland V, Blattner FR, Avelino-Flores F, Kaper JB. 2002. Identification and characterization of lpfABCC′DE, a fimbrial operon of enterohemorrhagic Escherichia coli O157:H7. Infect Immun 70:5416–5427. doi:10.1128/IAI.70.10.5416-5427.2002. PubMed DOI PMC
Torres AG, Kanack KJ, Tutt CB, Popov V, Kaper JB. 2004. Characterization of the second long polar (LP) fimbriae of Escherichia coli O157:H7 and distribution of LP fimbriae in other pathogenic E. coli strains. FEMS Microbiol Lett 238:333–344. PubMed
Friedrich AW, Nierhoff KV, Bielaszewska M, Mellmann A, Karch H. 2004. Phylogeny, clinical associations, and diagnostic utility of the pilin subunit gene (sfpA) of sorbitol-fermenting, enterohemorrhagic Escherichia coli O157:H−. J Clin Microbiol 42:4697–4701. doi:10.1128/JCM.42.10.4697-4701.2004. PubMed DOI PMC
Stephens CM, Skerker JM, Sekhon MS, Arkin AP, Riley LW. 2015. Complete genome sequences of four Escherichia coli ST95 isolates from bloodstream infections. Genome Announc 3:e01241-15. doi:10.1128/genomeA.01241-15. PubMed DOI PMC
Leimbach A, Hacker J, Dobrindt U. 2013. E. coli as an all-rounder: the thin line between commensalism and pathogenicity. Curr Top Microbiol Immunol 358:3–32. doi:10.1007/82_2012_303. PubMed DOI
Stephens CM, Adams-Sapper S, Sekhon M, Johnson JR, Riley LW. 2017. Genomic analysis of factors associated with low prevalence of antibiotic resistance in extraintestinal pathogenic Escherichia coli sequence type 95 strains. mSphere 2:e00390-16. doi:10.1128/mSphere.00390-16. PubMed DOI PMC
Frost LS, Ippen-Ihler K, Skurray RA. 1994. Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol Rev 58:162–210. PubMed PMC
Wick LM, Qi W, Lacher DW, Whittam TS. 2005. Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7. J Bacteriol 187:1783–1791. doi:10.1128/JB.187.5.1783-1791.2005. PubMed DOI PMC
Feng PC, Monday SR, Lacher DW, Allison L, Siitonen A, Keys C, Eklund M, Nagano H, Karch H, Keen J, Whittam TS. 2007. Genetic diversity among clonal lineages within Escherichia coli O157:H7 stepwise evolutionary model. Emerg Infect Dis 13:1701–1706. doi:10.3201/eid1311.070381. PubMed DOI PMC
Mellmann A, Bielaszewska M, Karch H. 2009. Intrahost genome alterations in enterohemorrhagic Escherichia coli. Gastroenterology 136:1925–1938. doi:10.1053/j.gastro.2008.12.072. PubMed DOI
Kossow A, Zhang W, Bielaszewska M, Rhode S, Hansen K, Fruth A, Rüter C, Karch H, Mellmann A. 2016. Molecular characterization of human atypical sorbitol-fermenting enteropathogenic Escherichia coli O157 reveals high diversity. J Clin Microbiol 54:1357–1363. doi:10.1128/JCM.02897-15. PubMed DOI PMC
Prager R, Strutz U, Fruth A, Tschäpe H. 2003. Subtyping of pathogenic Escherichia coli strains using flagellar (H)-antigens: serotyping versus fliC polymorphisms. Int J Med Microbiol 292:477–486. doi:10.1078/1438-4221-00226. PubMed DOI
Nagano I, Kunishima M, Itoh Y, Wu Z, Takahashi Y. 1998. Detection of verotoxin-producing Escherichia coli O157:H7 by multiplex polymerase chain reaction. Microbiol Immunol 42:371–376. doi:10.1111/j.1348-0421.1998.tb02297.x. PubMed DOI
Zhang W, Mellmann A, Sonntag AK, Wieler L, Bielaszewska M, Tschäpe H, Karch H, Friedrich AW. 2007. Structural and functional differences between disease-associated genes of enterohaemorrhagic Escherichia coli O111. Int J Med Microbiol 297:17–26. doi:10.1016/j.ijmm.2006.10.004. PubMed DOI
Toma C, Martínez Espinosa E, Song T, Miliwebsky E, Chinen I, Iyoda S, Iwanaga M, Rivas M. 2004. Distribution of putative adhesins in different seropathotypes of Shiga toxin-producing Escherichia coli. J Clin Microbiol 42:4937–4946. doi:10.1128/JCM.42.11.4937-4946.2004. PubMed DOI PMC
Scheutz F, Teel LD, Beutin L, Piérard D, Buvens G, Karch H, Mellmann A, Caprioli A, Tozzoli R, Morabito S, Strockbine NA, Melton-Celsa AR, Sanchez M, Persson S, O'Brien AD. 2012. Multicenter evaluation of a sequence-based protocol for subtyping Shiga toxins and standardizing Stx nomenclature. J Clin Microbiol 50:2951–2963. doi:10.1128/JCM.00860-12. PubMed DOI PMC
Zhang WL, Köhler B, Oswald E, Beutin L, Karch H, Morabito S, Caprioli A, Suerbaum S, Schmidt H. 2002. Genetic diversity of intimin genes of attaching and effacing Escherichia coli strains. J Clin Microbiol 40:4486–4492. doi:10.1128/JCM.40.12.4486-4492.2002. PubMed DOI PMC
Karmali MA, Petric M, Lim C, Fleming PC, Arbus GS, Lior H. 1985. The association between idiopathic hemolytic uremic syndrome and infection by verotoxin-producing Escherichia coli. J Infect Dis 151:775–782. doi:10.1093/infdis/151.5.775. PubMed DOI
Kado CI, Liu ST. 1981. Rapid procedure for detection and isolation of large and small plasmids. J Bacteriol 145:1365–1373. PubMed PMC
Zhang W, Bielaszewska M, Kunsmann L, Mellmann A, Bauwens A, Köck R, Kossow A, Anders A, Gatermann S, Karch H. 2013. Lability of the pAA virulence plasmid in Escherichia coli O104:H4: implications for virulence in humans. PLoS One 8:e66717. doi:10.1371/journal.pone.0066717. PubMed DOI PMC
Bielaszewska M, Prager R, Vandivinit L, Müsken A, Mellmann A, Holt NJ, Tarr PI, Karch H, Zhang W. 2009. Detection and characterization of the fimbrial sfp cluster in enterohemorrhagic Escherichia coli O165:H25/NM isolates from humans and cattle. Appl Environ Microbiol 75:64–71. doi:10.1128/AEM.01815-08. PubMed DOI PMC
Barton BM, Harding GP, Zuccarelli AJ. 1995. A general method for detecting and sizing large plasmids. Anal Biochem 226:235–240. doi:10.1006/abio.1995.1220. PubMed DOI
Mellmann A, Bletz S, Böking T, Kipp F, Becker K, Schultes A, Prior K, Harmsen D. 2016. Real-time genome sequencing of resistant bacteria provides precision infection control in an institutional setting. J Clin Microbiol 54:2874–2881. doi:10.1128/JCM.00790-16. PubMed DOI PMC
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. 2011. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402. doi:10.1186/1471-2164-12-402. PubMed DOI PMC
Rump LV, Strain EA, Cao G, Allard MW, Fischer M, Brown EW, Gonzalez-Escalona N. 2011. Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7. J Bacteriol 193:2058–2059. doi:10.1128/JB.00118-11. PubMed DOI PMC
Latif H, Li HJ, Charusanti P, Palsson BØ, Aziz RK. 2014. A gapless, unambiguous genome sequence of the enterohemorrhagic Escherichia coli O157:H7 strain EDL933. Genome Announc 2:e00821-14. doi:10.1128/genomeA.00821-14. PubMed DOI PMC
Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H. 2001. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8:11–22. doi:10.1093/dnares/8.1.11. PubMed DOI
European Committee on Antimicrobial Susceptibility Testing. 2017. Breakpoint tables for interpretation of MICs and zone diameters, version 7.1. http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Breakpoint_tables/v_7.1_Breakpoint_Tables.pdf Accessed 22 June 2017.
Matuschek E, Brown DF, Kahlmeter G. 2014. Development of the EUCAST disk diffusion antimicrobial susceptibility testing method and its implementation in routine microbiology laboratories. Clin Microbiol Infect 20:O255–O266. doi:10.1111/1469-0691.12373. PubMed DOI
Threlfall EJ, Rowe B, Ferguson JL, Ward LR. 1986. Characterization of plasmids conferring resistance to gentamicin and apramycin in strains of Salmonella typhimurium phage type 204c isolated in Britain. J Hyg (Lond) 97:419–426. doi:10.1017/S0022172400063609. PubMed DOI PMC
Karch H, Böhm H, Schmidt H, Gunzer F, Aleksic S, Heesemann J. 1993. Clonal structure and pathogenicity of Shiga-like toxin-producing, sorbitol-fermenting Escherichia coli O157:H−. J Clin Microbiol 31:1200–1205. PubMed PMC
Riley LW, Remis RS, Helgerson SD, McGee HB, Wells JG, Davis BR, Hebert RJ, Olcott ES, Johnson LM, Hargrett NT, Blake PA, Cohen ML. 1983. Hemorrhagic colitis associated with a rare Escherichia coli serotype. N Engl J Med 308:681–685. doi:10.1056/NEJM198303243081203. PubMed DOI
Watanabe H, Wada A, Inagaki Y, Itoh K, Tamura K. 1996. Outbreaks of enterohaemorrhagic Escherichia coli O157:H7 infection by two different genotype strains in Japan, 1996. Lancet 348:831–832. doi:10.1016/S0140-6736(05)65257-9. PubMed DOI