Characterization of the Complete Nucleotide Sequences of IMP-4-Encoding Plasmids, Belonging to Diverse Inc Families, Recovered from Enterobacteriaceae Isolates of Wildlife Origin
Language English Country United States Media electronic-print
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
29483121
PubMed Central
PMC5923110
DOI
10.1128/aac.02434-17
PII: AAC.02434-17
Knihovny.cz E-resources
- Keywords
- Enterobacter aerogenes, Escherichia coli, In1460, In809, IncF, IncI1, IncM, IncX5_2, Proteus mirabilis, Proteus penneri,
- MeSH
- Anti-Bacterial Agents pharmacology MeSH
- Enterobacteriaceae genetics pathogenicity MeSH
- Enterobacteriaceae Infections microbiology MeSH
- Plasmids genetics MeSH
- Gene Transfer, Horizontal genetics MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- Anti-Bacterial Agents MeSH
The complete nucleotide sequences of six IMP-4-encoding plasmids recovered from Enterobacteriaceae isolates of wildlife origin were characterized. Sequencing data showed that plasmids of different incompatibility groups (IncM, IncI1, IncF, and nontypeable [including an IncX5_2 and two pPrY2001-like]) carried the blaIMP-4-carrying integrons In809 or In1460. Most of the plasmids carried an mph(A) region, and chrA-like, aac(3)-IId, and blaTEM-1b genes. Finally, plasmid analysis revealed the involvement of two different IS26- and Tn1696-associated mechanisms in the mobilization of IMP-4-encoding integrons.
Biomedical Center Faculty of Medicine Charles University Plzen Czech Republic
CEITEC VFU University of Veterinary and Pharmaceutical Sciences Brno Brno Czech Republic
National Centre for Biomolecular Research Faculty of Science Masaryk University Brno Czech Republic
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Leung GH, Gray TJ, Cheong EY, Haertsch P, Gottlieb T. 2013. Persistence of related bla-IMP-4 metallo-beta-lactamase producing Enterobacteriaceae from clinical and environmental specimens within a burns unit in Australia—a six-year retrospective study. Antimicrob Resist Infect Control 2:35. doi:10.1186/2047-2994-2-35. PubMed DOI PMC
Hu L, Zhong Q, Shang Y, Wang H, Ning C, Li Y, Hang Y, Xiong J, Wang X, Xu Y, Qin Z, Parsons C, Wang L, Yu F. 2014. The prevalence of carbapenemase genes and plasmid-mediated quinolone resistance determinants in carbapenem-resistant Enterobacteriaceae from five teaching hospitals in central China. Epidemiol Infect 142:1972–1977. doi:10.1017/S0950268813002975. PubMed DOI PMC
Dolejska M, Masarikova M, Dobiasova H, Jamborova I, Karpiskova R, Havlicek M, Carlile N, Priddel D, Cizek A, Literak I. 2016. High prevalence of Salmonella and IMP-4-producing Enterobacteriaceae in the silver gull on Five Islands, Australia. J Antimicrob Chemother 71:63–70. doi:10.1093/jac/dkv306. PubMed DOI PMC
Abraham S, O'Dea M, Trott DJ, Abraham RJ, Hughes D, Pang S, McKew G, Cheong EY, Merlino J, Saputra S, Malik R, Gottlieb T. 2016. Isolation and plasmid characterization of carbapenemase (IMP-4) producing Salmonella enterica Typhimurium from cats. Sci Rep 6:35527. doi:10.1038/srep35527. PubMed DOI PMC
Papagiannitsis CC, Kutilova I, Medvecky M, Hrabak J, Dolejska M. 2017. Characterization of the complete nucleotide sequences of IncA/C2 plasmids carrying In809-like integrons from Enterobacteriaceae isolates of wildlife origin. Antimicrob Agents Chemother 61:e01093-17. doi:10.1128/AAC.01093-17. PubMed DOI PMC
Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ. 2005. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63:219–228. doi:10.1016/j.mimet.2005.03.018. PubMed DOI
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. doi:10.1093/bioinformatics/btu170. PubMed DOI PMC
Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. ArXiv arXiv:1303.3997 [q-bio.GN].
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prijibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477. doi:10.1089/cmb.2012.0021. PubMed DOI PMC
Loman NJ, Quinlan AR. 2014. Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics 30:3399–3401. doi:10.1093/bioinformatics/btu555. PubMed DOI PMC
Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147. doi:10.1371/journal.pone.0011147. PubMed DOI PMC
Partridge SR, Ginn AN, Paulsen IT, Iredell JR. 2012. pEl1573 carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids. Antimicrob Agents Chemother 56:6029–6032. doi:10.1128/AAC.01189-12. PubMed DOI PMC
Carattoli A, Seiffert SN, Schwendener S, Perreten V, Endimiani A. 2015. Differentiation of IncL and IncM plasmids associated with the spread of clinically relevant antimicrobial resistance. PLoS One 10:e0123063. doi:10.1371/journal.pone.0123063. PubMed DOI PMC
Carattoli A, Zankari E, García-Fernández A, Voldby Larsen M, Lund O, Villa L, Møller Aarestrup F, Hasman H. 2014. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother 58:3895–3903. doi:10.1128/AAC.02412-14. PubMed DOI PMC
Miriagou V, Carattoli A, Tzelepi E, Villa L, Tzouvelekis LS. 2005. IS26-associated In4-type integrons forming multiresistance loci in enterobacterial plasmids. Antimicrob Agents Chemother 49:3541–3543. doi:10.1128/AAC.49.8.3541-3543.2005. PubMed DOI PMC
Wang M, Tran JH, Jacoby GA, Zhang Y, Wang F, Hooper DC. 2003. Plasmid-mediated quinolone resistance in clinical isolates of Escherichia coli from Shanghai, China. Antimicrob Agents Chemother 47:2242–2248. doi:10.1128/AAC.47.7.2242-2248.2003. PubMed DOI PMC
Mataseje LF, Boyd DA, Lefebvre B, Bryce E, Embree J, Gravel D, Katz K, Kibsey P, Kuhn M, Langley J, Mitchell R, Roscoe D, Simor A, Taylor G, Thomas E, Turgeon N, Mulvey MR; Canadian Nosocomial Infection Surveillance Program. 2014. Complete sequences of a novel blaNDM-1-harbouring plasmid from Providencia rettgeri and an FII-type plasmid from Klebsiella pneumoniae identified in Canada. J Antimicrob Chemother 69:637–642. doi:10.1093/jac/dkt445. PubMed DOI
Marquez-Ortiz RA, Haggerty L, Olarte N, Duarte C, Garza-Ramos U, Silva-Sanchez J, Castro BE, Sim EM, Beltran M, Moncada MV, Valderrama A, Castellanos JE, Charles IG, Vanegas N, Escobar-Perez J, Petty NK. 2017. Genomic epidemiology of NDM-1-encoding plasmids in Latin American clinical isolates reveals insights into the evolution of multidrug resistance. Genome Biol Evol 9:1725–1741. doi:10.1093/gbe/evx115. PubMed DOI PMC
Szuplewska M, Ludwiczak M, Lyzwa K, Czarnecki J, Bartosik D. 2014. Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs). PLoS One 9:e105010. doi:10.1371/journal.pone.0105010. PubMed DOI PMC
Lawley TD, Burland V, Taylor DE. 2000. Analysis of the complete nucleotide sequence of the tetracycline-resistance transposon Tn10. Plasmid 43:235–239. doi:10.1006/plas.1999.1458. PubMed DOI
Zhu XQ, Wang XM, Li H, Shang YH, Pan YS, Wu CM, Wang Y, Du XD, Shen JZ. 2017. Novel lnu(G) gene conferring resistance to lincomycin by nucleotidylation, located on Tn6260 from Enterococcus faecalis E531. J Antimicrob Chemother 72:993–997. doi:10.1093/jac/dkw549. PubMed DOI
Chen L, Chavda KD, Fraimow HS, Mediavilla JR, Melano RG, Jacobs MR, Bonomo RA, Kreiswirth BN. 2013. Complete nucleotide sequences of blaKPC-4- and blaKPC-5-harboring IncN and IncX plasmids from Klebsiella pneumoniae strains isolated in New Jersey. Antimicrob Agents Chemother 57:269–276. doi:10.1128/AAC.01648-12. PubMed DOI PMC
Johnson TJ, Bielak EM, Fortini D, Hansen LH, Hasman H, Debroy C, Nolan LK, Carattoli A. 2012. Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. Plasmid 68:43–50. doi:10.1016/j.plasmid.2012.03.001. PubMed DOI
Sun F, Zhou D, Sun Q, Luo W, Tong Y, Zhang D, Wang Q, Feng W, Chen W, Fan Y, Xia P. 2016. Genetic characterization of two fully sequenced multi-drug resistant plasmids pP10164-2 and pP10164-3 from Leclercia adecarboxylata. Sci Rep 6:33982. doi:10.1038/srep33982. PubMed DOI PMC