Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK)
Status PubMed-not-MEDLINE Jazyk angličtina Země Bulharsko Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
29559822
PubMed Central
PMC5804120
DOI
10.3897/mycokeys.28.20887
Knihovny.cz E-zdroje
- Klíčová slova
- Indoor mycobiome, built environment, fungi, metadata, molecular identification, open data, sequence annotation, systematics, taxonomy,
- Publikační typ
- časopisecké články MeSH
Recent DNA-based studies have shown that the built environment is surprisingly rich in fungi. These indoor fungi - whether transient visitors or more persistent residents - may hold clues to the rising levels of human allergies and other medical and building-related health problems observed globally. The taxonomic identity of these fungi is crucial in such pursuits. Molecular identification of the built mycobiome is no trivial undertaking, however, given the large number of unidentified, misidentified, and technically compromised fungal sequences in public sequence databases. In addition, the sequence metadata required to make informed taxonomic decisions - such as country and host/substrate of collection - are often lacking even from reference and ex-type sequences. Here we report on a taxonomic annotation workshop (April 10-11, 2017) organized at the James Hutton Institute/University of Aberdeen (UK) to facilitate reproducible studies of the built mycobiome. The 32 participants went through public fungal ITS barcode sequences related to the built mycobiome for taxonomic and nomenclatural correctness, technical quality, and metadata availability. A total of 19,508 changes - including 4,783 name changes, 14,121 metadata annotations, and the removal of 99 technically compromised sequences - were implemented in the UNITE database for molecular identification of fungi (https://unite.ut.ee/) and shared with a range of other databases and downstream resources. Among the genera that saw the largest number of changes were Penicillium, Talaromyces, Cladosporium, Acremonium, and Alternaria, all of them of significant importance in both culture-based and culture-independent surveys of the built environment.
ATCC 10801 University Blvd Manassas Virginia 20110 USA
Department of Biology University of Ottawa 30 Marie Curie Ottawa ON Canada K1N 6N5
Department of Botany Faculty of Science Charles University Prague Czech Republic
Department of Ecological and Biological Sciences University of Tuscia Viterbo 01100 Italy
Department of Ecology and Evolutionary Biology UC Irvine Irvine CA 92697 USA
Evangelisches Schulzentrum Martinschule Max Planck Str 7 17491 Greifswald Germany
Gothenburg Global Biodiversity Centre Box 461 SE 405 30 Göteborg Sweden
Institute of Botany Nature Research Centre Žaliųjų ežerų Str 49 08406 Vilnius Lithuania
Institute of Microbiology Academy of Sciences of the Czech Republic v v i Prague Czech Republic
Plant and Microbial Biology University of California 94720 Berkeley California USA
School of Biological Sciences Seoul National University Seoul Republic of Korea
Sporometrics 219 Dufferin Street Suite 20C Toronto Ontario Canada M6K 1Y9
The James Hutton Institute and University of Aberdeen Aberdeen United Kingdom
University of Sydney Marie Bashir Institute for Infectious Diseases and Biosecurity Sydney Australia
University of Tartu Tartu Estonia
Westerdijk Fungal Biodiversity Institute Uppsalalaan 8 3584 CT Utrecht The Netherlands
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