Ab initio prediction of the polymorph phase diagram for crystalline methanol

. 2018 May 28 ; 9 (20) : 4622-4629. [epub] 20180416

Status PubMed-not-MEDLINE Jazyk angličtina Země Velká Británie, Anglie Médium electronic-ecollection

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid29899955

Organic crystals frequently adopt multiple distinct polymorphs exhibiting different properties. The ability to predict not only what crystal forms might occur, but under what experimental thermodynamic conditions those polymorphs are stable would be immensely valuable to the pharmaceutical industry and others. Starting only from knowledge of the experimental crystal structures, this study successfully predicts the methanol crystal polymorph phase diagram from first-principles quantum chemistry, mapping out the thermodynamic regions of stability for three polymorphs over the range 0-400 K and 0-6 GPa. The agreement between the predicted and experimental phase diagrams corresponds to predicting the relative polymorph free energies to within ∼0.5 kJ mol-1 accuracy, which is achieved by employing fragment-based second-order Møller-Plesset perturbation theory and coupled cluster theory plus a quasi-harmonic treatment of the phonons.

Zobrazit více v PubMed

Price S. L., Braun D. E., Reutzel-Edens S. M. Chem. Commun. 2016;52:7065–7077. PubMed PMC

Price S. L. Chem. Soc. Rev. 2014;43:2098–2111. PubMed

Zurek E., Discovering New Materials via A Priori Crystal Structure Prediction, in Reviews in Computational Chemistry, ed. K. B. Lipkowitz, Wiley, New York, 2016, vol. 29, pp. 274–326..

Baias M., Dumez J.-N., Svensson P. H., Schantz S., Day G. M., Emsley L. J. Am. Chem. Soc. 2013;135:17501–17507. PubMed

Neumann M. A., van de Streek J., Fabbiani F. P. A., Hidber P., Grassmann O. Nat. Commun. 2015;6:7793. PubMed PMC

Pulido A. Nature. 2017;543:657–664. PubMed PMC

Beran G. J. O. Chem. Rev. 2016;116:5567–5613. PubMed

Hoja J., Reilly A. M., Tkatchenko A. WIREs Comput. Mol. Sci. 2017;7:e1294.

Grimme S., Hansen A., Brandenburg J. G., Bannwarth C. Chem. Rev. 2016;116:5105–5154. PubMed

Brandenburg J. G., Grimme S. J. Phys. Chem. Lett. 2014;5:1785–1789. PubMed

Day G. M., Cooper T. G., Cruz-Cabeza A. J., Hejczyk K. E., Ammon H. L., Boerrigter S. X. M., Tan J. S., Della Valle R. G., Venuti E., Jose J., Gadre S. R., Desiraju G. R., Thakur T. S., van Eijck B. P., Facelli J. C., Bazterra V. E., Ferraro M. B., Hofmann D. W. M., Neumann M. A., Leusen F. J. J., Kendrick J., Price S. L., Misquitta A. J., Karamertzanis P. G., Welch G. W. A., Scheraga H. A., Arnautova Y. A., Schmidt M. U., van de Streek J., Wolf A. K., Schweizer B. Acta Crystallogr., Sect. B: Struct. Sci. 2009;65:107–125. PubMed

Bardwell D. A., Adjiman C. S., Arnautova Y. A., Bartashevich E., Boerrigter S. X. M., Braun D. E., Cruz-Cabeza A. J., Day G. M., Della Valle R. G., Desiraju G. R., van Eijck B. P., Facelli J. C., Ferraro M. B., Grillo D., Habgood M., Hofmann D. W. M., Hofmann F., Jose K. V. J., Karamertzanis P. G., Kazantsev A. V., Kendrick J., Kuleshova L. N., Leusen F. J. J., Maleev A. V., Misquitta A. J., Mohamed S., Needs R. J., Neumann M. A., Nikylov D., Orendt A. M., Pal R., Pantelides C. C., Pickard C. J., Price L. S., Price S. L., Scheraga H. A., van de Streek J., Thakur T. S., Tiwari S., Venuti E., Zhitkov I. K. Acta Crystallogr., Sect. B: Struct. Sci. 2011;67:535–551. PubMed PMC

Reilly A. M., Cooper R. I., Adjiman C. S., Bhattacharya S., Boese A. D., Brandenburg J. G., Bygrave P. J., Bylsma R., Campbell J. E., Car R., Case D. H., Chadha R., Cole J. C., Cosburn K., Cuppen H. M., Curtis F., Day G. M., DiStasio Jr R. A., Dzyabchenko A., van Eijck B. P., Elking D. M., van den Ende J. A., Facelli J. C., Ferraro M. B., Fusti-Molnar L., Gatsiou C.-A., Gee T. S., de Gelder R., Ghiringhelli L. M., Goto H., Grimme S., Guo R., Hofmann D. W. M., Hoja J., Hylton R. K., Iuzzolino L., Jankiewicz W., de Jong D. T., Kendrick J., de Klerk N. J. J., Ko H.-Y., Kuleshova L. N., Li X., Lohani S., Leusen F. J. J., Lund A. M., Lv J., Ma Y., Marom N., Masunov A. E., McCabe P., McMahon D. P., Meekes H., Metz M. P., Misquitta A. J., Mohamed S., Monserrat B., Needs R. J., Neumann M. A., Nyman J., Obata S., Oberhofer H., Oganov A. R., Orendt A. M., Pagola G. I., Pantelides C. C., Pickard C. J., Podeszwa R., Price L. S., Price S. L., Pulido A., Read M. G., Reuter K., Schneider E., Schober C., Shields G. P., Singh P., Sugden I. J., Szalewicz K., Taylor C. R., Tkatchenko A., Tuckerman M. E., Vacarro F., Vasileiadis M., Vazquez-Mayagoitia A., Vogt L., Wang Y., Watson R. E., de Wijs G. A., Yang J., Zhu Q., Groom C. R. Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater. 2016;72:439–459. PubMed PMC

Beran G. J. O. Nat. Mater. 2017;16:602–604. PubMed

Nyman J., Day G. M. CrystEngComm. 2015;17:5154–5165.

Nyman J., Day G. M. Phys. Chem. Chem. Phys. 2016;18:31132–31143. PubMed PMC

Yang J., Hu W., Usvyat D., Matthews D., Schutz M., Chan G. K.-L. Science. 2014;345:640–643. PubMed

Würflinger A., Landau R. J. Phys. Chem. Solids. 1977;38:811–814.

Gromnitskaya E. L., Stal'gorova O. V., Yagafarov O. F., Brazhkin V. V., Lyapin A. G., Popova S. V. J. Exp. Theor. Phys. Lett. 2004;80:597–601.

Kondrin M. V., Pronin A. A., Lebed Y. B., Brazhkin V. V. J. Chem. Phys. 2013;139:084510. PubMed

Schön J. C., Jansen M. Int. J. Mater. Res. 2009;100:135–152.

Revard B. C., Tipton W. W., Hennig R. G. Top. Curr. Chem. 2014;345:181–222. PubMed

Schatschneider B., Liang J.-J., Jezowski S., Tkatchenko A. CrystEngComm. 2012;14:4656–4663.

Griffiths G. I., Misquitta A. J., Fortes A. D., Pickard C. J., Needs R. J. J. Chem. Phys. 2012;137:064506. PubMed

Heit Y. N., Nanda K. D., Beran G. J. O. Chem. Sci. 2016;7:246–255. PubMed PMC

Raiteri P., Martonák R., Parrinello M. Angew. Chem., Int. Ed. 2005;44:3769–3773. PubMed

Schneider E., Vogt L., Tuckerman M. E. Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater. 2016;72:542–550. PubMed

Dybeck E. C., Abraham N. S., Schieber N. P., Shirts M. R. Cryst. Growth Des. 2017;17:1775–1787.

Schieber N. P., Dybeck E. C., Shirts M. R. J. Chem. Phys. 2018;148:144104. PubMed

Bonev S. A., Gygi F., Ogitsu T., Galli G. Phys. Rev. Lett. 2003;91:065501. PubMed

Vega C., Abascal J. L. F., Sanz E., MacDowell L. G., McBride C. J. Phys.: Condens. Matter. 2005;17:S3283–S3288.

Wang L.-P., Head-Gordon T., Ponder J. W., Ren P., Chodera J. D., Eastman P. K., Martinez T. J., Pande V. S. J. Phys. Chem. B. 2013;117:9956–9972. PubMed PMC

Kirchner M. T., Das D., Boese R. Cryst. Growth Des. 2008;8:763–765.

Allan D. R., Clark S. J., Brugmans M. J. P., Ackland G. J., Vos W. L. Phys. Rev. B. 1998;58:R11809–R11812.

Stoffel R. P., Wessel C., Lumey M.-W., Dronskowski R. Angew. Chem., Int. Ed. 2010;49:5242–5266. PubMed

Červinka C., Fulem M., Stoffel R. P., Dronskowski R. J. Phys. Chem. A. 2016;120:2022–2034. PubMed

Beran G. J. O., Nanda K. J. Phys. Chem. Lett. 2010;1:3480–3487.

Ren P., Wu C., Ponder J. W. J. Chem. Theory Comput. 2011;7:3143–3161. PubMed PMC

Wen S., Beran G. J. O. J. Chem. Theory Comput. 2012;8:2698–2705. PubMed

Heit Y. N., Beran G. J. O. Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater. 2016;72:514–529. PubMed

Sontising W., Heit Y. N., McKinley J. L., Beran G. J. O. Chem. Sci. 2017;8:7374–7382. PubMed PMC

Červinka C., Beran G. J. O. Phys. Chem. Chem. Phys. 2017;19:29940–29953. PubMed

McKinley J. L., Beran G. J. O. Faraday Discuss. 2018 doi: 10.1039/c8fd00048d. PubMed DOI

Červinka C., Fulem M. J. Chem. Theory Comput. 2017;13:2840–2850. PubMed

Nagayoshi K., Kitaura K., Koseki S., Re S., Kobayashi K., Choe Y.-K., Nagase S. Chem. Phys. Lett. 2003;369:597–604.

Červinka C., Fulem M., RůŽička K. J. Chem. Phys. 2016;144:064505. PubMed

Carlson H. G., Westrum E. F. J. Chem. Phys. 1971;54:1464–1471.

Gonzalez Salgado D., Vega C. J. Chem. Phys. 2010;132:094505. PubMed

Gonzalez-Salgado D., Dopazo-Paz A., Gomez-Alvarez P., Miguez J. M., Vega C. J. Phys. Chem. B. 2011;115:3522–3530. PubMed

Tauer K. J., Lipscomb W. N. Acta Crystallogr. 1952;5:606–612.

Durig J. R., Pate C. B., Li Y. S., Antion D. J. J. Chem. Phys. 1971;54:4863.

Anderson A., Andrews B., Meiering E. M., Torrie B. H. J. Raman Spectrosc. 1988;19:85–89.

Torrie B., Weng S.-X., Powell B. Mol. Phys. 1989;67:575–581.

Tycko R., Dabbagh G. J. Am. Chem. Soc. 1991;113:3592–3593.

Robyr P., Meier B. H., Fischer P., Ernst R. R. J. Am. Chem. Soc. 1994;116:5315–5323.

Torrie B. H., Binbrek O. S., Strauss M., Swainson I. P. J. Solid State Chem. 2002;166:415–420.

Habgood M., Grau-Crespo R., Price S. L. Phys. Chem. Chem. Phys. 2011;13:9590–9600. PubMed

Muller C., Spangberg D. J. Comput. Chem. 2015;36:1420–1427. PubMed

Lin T.-J., Hsing C.-R., Wei C.-M., Kuo J.-L. Phys. Chem. Chem. Phys. 2016;18:2736–2746. PubMed

Brandenburg J. G., Potticary J., Sparkes H. A., Price S. L., Hall S. R. J. Phys. Chem. Lett. 2017;8:4319–4324. PubMed

Heinlein R. A., “Where To?” in Expanded Universe, Ace Science Fiction, New York, 1980, p. 348.

Dunning T. H. J. Chem. Phys. 1989;90:1007–1023.

Werner H.-J., Knowles P. J., Knizia G., Manby F. R., Schütz M., Celani P., Korona T., Lindh R., Mitrushenkov A., Rauhut G., Shamasundar K. R., Adler T. B., Amos R. D., Bernhardsson A., Berning A., Cooper D. L., Deegan M. J. O., Dobbyn A. J., Eckert F., Goll E., Hampel C., Hesselmann A., Hetzer G., Hrenar T., Jansen G., Köppl C., Liu Y., Lloyd A. W., Mata R. A., May A. J., McNicholas S. J., Meyer W., Mura M. E., Nicklass A., O'Neill D. P., Palmieri P., Peng D., Pflüger K., Pitzer R., Reiher M., Shiozaki T., Stoll H., Stone A. J., Tarroni R., Thorsteinsson T., and Wang M., MOLPRO, version 1, a package of ab initio programs, 2012, see http://www.molpro.net.

Ponder J. W., TINKER v6.2, http://dasher.wustl.edu/tinker/, accessed May 15, 2014.

Peintinger M. F., Oliveira D. V., Bredow T. J. Comput. Chem. 2013;34:451–459. PubMed

Dovesi R., Orlando R., Civalleri B., Roetti C., Saunders V. R., Zicovich-Wilson C. M. Z. Kristallogr. 2005;220:571–573.

Karton A., Martin J. M. L. Theor. Chem. Acc. 2006;115:330–333.

Helgaker T., Klopper W., Koch H., Noga J. J. Chem. Phys. 1997;106:9639–9646.

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...