Circulating Cell-Free DNA and Colorectal Cancer: A Systematic Review

. 2018 Oct 26 ; 19 (11) : . [epub] 20181026

Jazyk angličtina Země Švýcarsko Médium electronic

Typ dokumentu časopisecké články, systematický přehled

Perzistentní odkaz   https://www.medvik.cz/link/pmid30373199

Grantová podpora
AZV 17- 30920A Grant Agency of the Ministry of Health of the Czech Republic
GACR 18-09709S Grant Agency of the Czech Republic
UNCE/MED/006 University Center of Clinical and Experimental Liver Surgery

There is a strong demand for the identification of new biomarkers in colorectal cancer (CRC) diagnosis. Among all liquid biopsy analysts, cell-free circulating DNA (cfDNA) is probably the most promising tool with respect to the identification of minimal residual diseases, assessment of treatment response and prognosis, and identification of resistance mechanisms. Circulating cell-free tumor DNA (ctDNA) maintains the same genomic signatures that are present in the matching tumor tissue allowing for the quantitative and qualitative evaluation of mutation burdens in body fluids. Thus, ctDNA-based research represents a non-invasive method for cancer detection. Among the numerous possible applications, the diagnostic, predictive, and/or prognostic utility of ctDNA in CRC has attracted intense research during the last few years. In the present review, we will describe the different aspects related to cfDNA research and evidence from studies supporting its potential use in CRC diagnoses and the improvement of therapy efficacy. We believe that ctDNA-based research should be considered as key towards the introduction of personalized medicine and patient benefits.

Zobrazit více v PubMed

Salvi S., Gurioli G., De Giorgi U., Conteduca V., Tedaldi G., Calistri D., Casadio V. Cell-free DNA as a diagnostic marker for cancer: Current insights. Oncotargets Ther. 2016;9:6549–6559. doi: 10.2147/OTT.S100901. PubMed DOI PMC

Colussi D., Brandi G., Bazzoli F., Ricciardiello L. Molecular pathways involved in colorectal cancer: Implications for disease behavior and prevention. Int. J. Mol. Sci. 2013;14:16365–16385. doi: 10.3390/ijms140816365. PubMed DOI PMC

Tanaka T. Colorectal carcinogenesis: Review of human and experimental animal studies. J. Carcinog. 2009;8:5. doi: 10.4103/1477-3163.49014. PubMed DOI PMC

Frattini M., Balestra D., Suardi S., Oggionni M., Alberici P., Radice P., Costa A., Daidone M.G., Leo E., Pilotti S., et al. Different genetic features associated with colon and rectal carcinogenesis. Clin. Cancer Res. 2004;10:4015–4021. doi: 10.1158/1078-0432.CCR-04-0031. PubMed DOI

Pramateftakis M.G., Kanellos D., Tekkis P.P., Touroutoglou N., Kanellos I. Rectal cancer: Multimodal treatment approach. Int. J. Surg. Oncol. 2012;2012:279341. doi: 10.1155/2012/279341. PubMed DOI PMC

Haggar F.A., Boushey R.P. Colorectal cancer epidemiology: Incidence, mortality, survival, and risk factors. Clin. Colon Rectal Surg. 2009;22:191–197. doi: 10.1055/s-0029-1242458. PubMed DOI PMC

Brandi G., De Lorenzo S., Nannini M., Curti S., Ottone M., Dall’Olio F.G., Barbera M.A., Pantaleo M.A., Biasco G. Adjuvant chemotherapy for resected colorectal cancer metastases: Literature review and meta-analysis. World J. Gastroenterol. 2016;22:519–533. doi: 10.3748/wjg.v22.i2.519. PubMed DOI PMC

Naccarati A., Rosa F., Vymetalkova V., Barone E., Jiraskova K., Di Gaetano C., Novotny J., Levy M., Vodickova L., Gemignani F., et al. Double-strand break repair and colorectal cancer: Gene variants within 3′ utrs and micrornas binding as modulators of cancer risk and clinical outcome. Oncotarget. 2016;7:23156–23169. doi: 10.18632/oncotarget.6804. PubMed DOI PMC

Siegel R., DeSantis C., Virgo K., Stein K., Mariotto A., Smith T., Cooper D., Gansler T., Lerro C., Fedewa S., et al. Cancer treatment and survivorship statistics, 2012. CA Cancer J. Clin. 2012;62:220–241. doi: 10.3322/caac.21149. PubMed DOI

Mroziewicz M., Tyndale R.F. Pharmacogenetics: A tool for identifying genetic factors in drug dependence and response to treatment. Addict. Sci. Clin. Pract. 2010;5:17–29. PubMed PMC

Balmativola D., Marchio C., Maule M., Chiusa L., Annaratone L., Maletta F., Montemurro F., Kulka J., Figueiredo P., Varga Z., et al. Pathological non-response to chemotherapy in a neoadjuvant setting of breast cancer: An inter-institutional study. Breast Cancer Res. Treat. 2014;148:511–523. doi: 10.1007/s10549-014-3192-3. PubMed DOI PMC

Heitzer E., Ulz P., Geigl J.B. Circulating tumor DNA as a liquid biopsy for cancer. Clin. Chem. 2015;61:112–123. doi: 10.1373/clinchem.2014.222679. PubMed DOI

Vanderlaan P.A., Yamaguchi N., Folch E., Boucher D.H., Kent M.S., Gangadharan S.P., Majid A., Goldstein M.A., Huberman M.S., Kocher O.N., et al. Success and failure rates of tumor genotyping techniques in routine pathological samples with non-small-cell lung cancer. Lung Cancer. 2014;84:39–44. doi: 10.1016/j.lungcan.2014.01.013. PubMed DOI PMC

Rybinski B., Yun K. Addressing intra-tumoral heterogeneity and therapy resistance. Oncotarget. 2016;7:72322–72342. doi: 10.18632/oncotarget.11875. PubMed DOI PMC

Cheung A.H., Chow C., To K.F. Latest development of liquid biopsy. J. Thorac. Dis. 2018;10:S1645–S1651. doi: 10.21037/jtd.2018.04.68. PubMed DOI PMC

Kuo Y.B., Chen J.S., Fan C.W., Li Y.S., Chan E.C. Comparison of kras mutation analysis of primary tumors and matched circulating cell-free DNA in plasmas of patients with colorectal cancer. Clin. Chim. Acta. 2014;433:284–289. doi: 10.1016/j.cca.2014.03.024. PubMed DOI

Burch J.A., Soares-Weiser K., St John D.J., Duffy S., Smith S., Kleijnen J., Westwood M. Diagnostic accuracy of faecal occult blood tests used in screening for colorectal cancer: A systematic review. J. Med. Screen. 2007;14:132–137. doi: 10.1258/096914107782066220. PubMed DOI

Ramos M., Llagostera M., Esteva M., Cabeza E., Cantero X., Segarra M., Martin-Rabadan M., Artigues G., Torrent M., Taltavull J.M., et al. Knowledge and attitudes of primary healthcare patients regarding population-based screening for colorectal cancer. BMC Cancer. 2011;11:408. doi: 10.1186/1471-2407-11-408. PubMed DOI PMC

Ahmed F.E., Ahmed N.C., Vos P.W., Bonnerup C., Atkins J.N., Casey M., Nuovo G.J., Naziri W., Wiley J.E., Mota H., et al. Diagnostic microrna markers to screen for sporadic human colon cancer in stool: I. Proof of principle. Cancer Genom. Proteom. 2013;10:93–113. PubMed

Ulz P., Heitzer E., Geigl J.B., Speicher M.R. Patient monitoring through liquid biopsies using circulating tumor DNA. Int. J. Cancer. 2017;141:887–896. doi: 10.1002/ijc.30759. PubMed DOI

Bettegowda C., Sausen M., Leary R.J., Kinde I., Wang Y., Agrawal N., Bartlett B.R., Wang H., Luber B., Alani R.M., et al. Detection of circulating tumor DNA in early- and late-stage human malignancies. Sci. Transl. Med. 2014;6:224ra224. doi: 10.1126/scitranslmed.3007094. PubMed DOI PMC

Heitzer E., Auer M., Hoffmann E.M., Pichler M., Gasch C., Ulz P., Lax S., Waldispuehl-Geigl J., Mauermann O., Mohan S., et al. Establishment of tumor-specific copy number alterations from plasma DNA of patients with cancer. Int. J. Cancer. 2013;133:346–356. doi: 10.1002/ijc.28030. PubMed DOI PMC

Thierry A.R., Mouliere F., El Messaoudi S., Mollevi C., Lopez-Crapez E., Rolet F., Gillet B., Gongora C., Dechelotte P., Robert B., et al. Clinical validation of the detection of kras and braf mutations from circulating tumor DNA. Nat. Med. 2014;20:430–435. doi: 10.1038/nm.3511. PubMed DOI

Mandel P., Metais P. Les acides nucleiques du plasma sanguin chez 1 homme. C R Seances Soc. Biol. Fil. 1948;142:241–243. PubMed

Leon S.A., Shapiro B., Sklaroff D.M., Yaros M.J. Free DNA in the serum of cancer patients and the effect of therapy. Cancer Res. 1977;37:646–650. PubMed

Stroun M., Anker P., Maurice P., Lyautey J., Lederrey C., Beljanski M. Neoplastic characteristics of the DNA found in the plasma of cancer patients. Oncology. 1989;46:318–322. doi: 10.1159/000226740. PubMed DOI

Wang J.Y., Hsieh J.S., Chang M.Y., Huang T.J., Chen F.M., Cheng T.L., Alexandersen K., Huang Y.S., Tzou W.S., Lin S.R. Molecular detection of APC, K-ras, and p53 mutations in the serum of colorectal cancer patients as circulating biomarkers. World J. Surg. 2004;28:721–726. doi: 10.1007/s00268-004-7366-8. PubMed DOI

Shaw J.A., Smith B.M., Walsh T., Johnson S., Primrose L., Slade M.J., Walker R.A., Coombes R.C. Microsatellite alterations plasma DNA of primary breast cancer patients. Clin. Cancer Res. 2000;6:1119–1124. PubMed

Fujiwara K., Fujimoto N., Tabata M., Nishii K., Matsuo K., Hotta K., Kozuki T., Aoe M., Kiura K., Ueoka H., et al. Identification of epigenetic aberrant promoter methylation in serum DNA is useful for early detection of lung cancer. Clin. Cancer Res. 2005;11:1219–1225. PubMed

Brychta N., Krahn T., von Ahsen O. Detection of KRAS mutations in circulating tumor DNA by digital PCR in early stages of pancreatic cancer. Clin. Chem. 2016;62:1482–1491. doi: 10.1373/clinchem.2016.257469. PubMed DOI

Gao J., Wang H., Zang W., Li B., Rao G., Li L., Yu Y., Li Z., Dong B., Lu Z., et al. Circulating tumor DNA functions as an alternative for tissue to overcome tumor heterogeneity in advanced gastric cancer. Cancer Sci. 2017;108:1881–1887. doi: 10.1111/cas.13314. PubMed DOI PMC

Chan K.C. Scanning for cancer genomic changes in plasma: Toward an era of personalized blood-based tumor markers. Clin. Chem. 2013;59:1553–1555. doi: 10.1373/clinchem.2013.207381. PubMed DOI

Atamaniuk J., Kopecky C., Skoupy S., Saemann M.D., Weichhart T. Apoptotic cell-free DNA promotes inflammation in haemodialysis patients. Nephrol. Dial. Transpl. 2012;27:902–905. doi: 10.1093/ndt/gfr695. PubMed DOI

Tug S., Helmig S., Menke J., Zahn D., Kubiak T., Schwarting A., Simon P. Correlation between cell free DNA levels and medical evaluation of disease progression in systemic lupus erythematosus patients. Cell. Immunol. 2014;292:32–39. doi: 10.1016/j.cellimm.2014.08.002. PubMed DOI

Huang Z.H., Li L.H., Hua D. Quantitative analysis of plasma circulating DNA at diagnosis and during follow-up of breast cancer patients. Cancer Lett. 2006;243:64–70. doi: 10.1016/j.canlet.2005.11.027. PubMed DOI

Kim K., Shin D.G., Park M.K., Baik S.H., Kim T.H., Kim S., Lee S. Circulating cell-free DNA as a promising biomarker in patients with gastric cancer: Diagnostic validity and significant reduction of cfDNA after surgical resection. Ann. Surg. Treat. Res. 2014;86:136–142. doi: 10.4174/astr.2014.86.3.136. PubMed DOI PMC

Murtaza M., Caldas C. Nucleosome mapping in plasma DNA predicts cancer gene expression. Nat. Genet. 2016;48:1105–1106. doi: 10.1038/ng.3686. PubMed DOI

Shapiro B., Chakrabarty M., Cohn E.M., Leon S.A. Determination of circulating DNA levels in patients with benign or malignant gastrointestinal disease. Cancer. 1983;51:2116–2120. doi: 10.1002/1097-0142(19830601)51:11<2116::AID-CNCR2820511127>3.0.CO;2-S. PubMed DOI

Su Y.H., Wang M., Brenner D.E., Norton P.A., Block T.M. Detection of mutated K-ras DNA in urine, plasma, and serum of patients with colorectal carcinoma or adenomatous polyps. Ann. N. Y. Acad. Sci. 2008;1137:197–206. doi: 10.1196/annals.1448.027. PubMed DOI PMC

Yao W., Mei C., Nan X., Hui L. Evaluation and comparison of in vitro degradation kinetics of DNA in serum, urine and saliva: A qualitative study. Gene. 2016;590:142–148. doi: 10.1016/j.gene.2016.06.033. PubMed DOI

Haber D.A., Velculescu V.E. Blood-based analyses of cancer: Circulating tumor cells and circulating tumor DNA. Cancer Discov. 2014;4:650–661. doi: 10.1158/2159-8290.CD-13-1014. PubMed DOI PMC

Jahr S., Hentze H., Englisch S., Hardt D., Fackelmayer F.O., Hesch R.D., Knippers R. DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells. Cancer Res. 2001;61:1659–1665. PubMed

Diehl F., Li M., Dressman D., He Y., Shen D., Szabo S., Diaz L.A., Jr., Goodman S.N., David K.A., Juhl H., et al. Detection and quantification of mutations in the plasma of patients with colorectal tumors. Proc. Natl. Acad. Sci. USA. 2005;102:16368–16373. doi: 10.1073/pnas.0507904102. PubMed DOI PMC

Thakur B.K., Zhang H., Becker A., Matei I., Huang Y., Costa-Silva B., Zheng Y., Hoshino A., Brazier H., Xiang J., et al. Double-stranded DNA in exosomes: A novel biomarker in cancer detection. Cell Res. 2014;24:766–769. doi: 10.1038/cr.2014.44. PubMed DOI PMC

Vlassov A.V., Magdaleno S., Setterquist R., Conrad R. Exosomes: Current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials. Biochim. Biophys. Acta. 2012;1820:940–948. doi: 10.1016/j.bbagen.2012.03.017. PubMed DOI

Fan H.C., Blumenfeld Y.J., Chitkara U., Hudgins L., Quake S.R. Analysis of the size distributions of fetal and maternal cell-free DNA by paired-end sequencing. Clin. Chem. 2010;56:1279–1286. doi: 10.1373/clinchem.2010.144188. PubMed DOI

Lo Y.M., Chan K.C., Sun H., Chen E.Z., Jiang P., Lun F.M., Zheng Y.W., Leung T.Y., Lau T.K., Cantor C.R., et al. Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus. Sci. Transl. Med. 2010;2:61ra91. doi: 10.1126/scitranslmed.3001720. PubMed DOI

Thierry A.R., Mouliere F., Gongora C., Ollier J., Robert B., Ychou M., Del Rio M., Molina F. Origin and quantification of circulating DNA in mice with human colorectal cancer xenografts. Nucleic Acids Res. 2010;38:6159–6175. doi: 10.1093/nar/gkq421. PubMed DOI PMC

Mouliere F., Rosenfeld N. Circulating tumor-derived DNA is shorter than somatic DNA in plasma. Proc. Natl. Acad. Sci. USA. 2015;112:3178–3179. doi: 10.1073/pnas.1501321112. PubMed DOI PMC

Umetani N., Kim J., Hiramatsu S., Reber H.A., Hines O.J., Bilchik A.J., Hoon D.S. Increased integrity of free circulating DNA in sera of patients with colorectal or periampullary cancer: Direct quantitative PCR for ALU repeats. Clin. Chem. 2006;52:1062–1069. doi: 10.1373/clinchem.2006.068577. PubMed DOI

Hwu H.R., Roberts J.W., Davidson E.H., Britten R.J. Insertion and/or deletion of many repeated DNA sequences in human and higher ape evolution. Proc. Natl. Acad. Sci. USA. 1986;83:3875–3879. doi: 10.1073/pnas.83.11.3875. PubMed DOI PMC

Gorges T.M., Schiller J., Schmitz A., Schuetzmann D., Schatz C., Zollner T.M., Krahn T., von Ahsen O. Cancer therapy monitoring in xenografts by quantitative analysis of circulating tumor DNA. Biomarkers. 2012;17:498–506. doi: 10.3109/1354750X.2012.689133. PubMed DOI

Mouliere F., El Messaoudi S., Gongora C., Guedj A.S., Robert B., Del Rio M., Molina F., Lamy P.J., Lopez-Crapez E., Mathonnet M., et al. Circulating cell-free DNA from colorectal cancer patients may reveal high KRAS or BRAF mutation load. Transl. Oncol. 2013;6:319–328. doi: 10.1593/tlo.12445. PubMed DOI PMC

Sun K., Jiang P., Chan K.C., Wong J., Cheng Y.K., Liang R.H., Chan W.K., Ma E.S., Chan S.L., Cheng S.H., et al. Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments. Proc. Natl. Acad. Sci. USA. 2015;112:E5503–E5512. doi: 10.1073/pnas.1508736112. PubMed DOI PMC

Underhill H.R., Kitzman J.O., Hellwig S., Welker N.C., Daza R., Baker D.N., Gligorich K.M., Rostomily R.C., Bronner M.P., Shendure J. Fragment length of circulating tumor DNA. PLoS Genet. 2016;12:e1006162. doi: 10.1371/journal.pgen.1006162. PubMed DOI PMC

Cheng S.H., Jiang P., Sun K., Cheng Y.K., Chan K.C., Leung T.Y., Chiu R.W., Lo Y.M. Noninvasive prenatal testing by nanopore sequencing of maternal plasma DNA: Feasibility assessment. Clin. Chem. 2015;61:1305–1306. doi: 10.1373/clinchem.2015.245076. PubMed DOI

Kahlert C., Melo S.A., Protopopov A., Tang J., Seth S., Koch M., Zhang J., Weitz J., Chin L., Futreal A., et al. Identification of double-stranded genomic DNA spanning all chromosomes with mutated KRAS and p53 DNA in the serum exosomes of patients with pancreatic cancer. J. Biol. Chem. 2014;289:3869–3875. doi: 10.1074/jbc.C113.532267. PubMed DOI PMC

Wan J.C.M., Massie C., Garcia-Corbacho J., Mouliere F., Brenton J.D., Caldas C., Pacey S., Baird R., Rosenfeld N. Liquid biopsies come of age: Towards implementation of circulating tumour DNA. Nat. Rev. Cancer. 2017;17:223–238. doi: 10.1038/nrc.2017.7. PubMed DOI

Mouliere F., El Messaoudi S., Pang D., Dritschilo A., Thierry A.R. Multi-marker analysis of circulating cell-free DNA toward personalized medicine for colorectal cancer. Mol. Oncol. 2014;8:927–941. doi: 10.1016/j.molonc.2014.02.005. PubMed DOI PMC

Mouliere F., Robert B., Arnau Peyrotte E., Del Rio M., Ychou M., Molina F., Gongora C., Thierry A.R. High fragmentation characterizes tumour-derived circulating DNA. PLoS ONE. 2011;6:e23418. doi: 10.1371/journal.pone.0023418. PubMed DOI PMC

Devonshire A.S., Whale A.S., Gutteridge A., Jones G., Cowen S., Foy C.A., Huggett J.F. Towards standardisation of cell-free DNA measurement in plasma: Controls for extraction efficiency, fragment size bias and quantification. Anal. Bioanal. Chem. 2014;406:6499–6512. doi: 10.1007/s00216-014-7835-3. PubMed DOI PMC

Lee T.H., Montalvo L., Chrebtow V., Busch M.P. Quantitation of genomic DNA in plasma and serum samples: Higher concentrations of genomic DNA found in serum than in plasma. Transfusion. 2001;41:276–282. doi: 10.1046/j.1537-2995.2001.41020276.x. PubMed DOI

Lo Y.M., Tein M.S., Lau T.K., Haines C.J., Leung T.N., Poon P.M., Wainscoat J.S., Johnson P.J., Chang A.M., Hjelm N.M. Quantitative analysis of fetal DNA in maternal plasma and serum: Implications for noninvasive prenatal diagnosis. Am. J. Hum. Genet. 1998;62:768–775. doi: 10.1086/301800. PubMed DOI PMC

Jung M., Klotzek S., Lewandowski M., Fleischhacker M., Jung K. Changes in concentration of DNA in serum and plasma during storage of blood samples. Clin. Chem. 2003;49:1028–1029. doi: 10.1373/49.6.1028. PubMed DOI

Board R.E., Williams V.S., Knight L., Shaw J., Greystoke A., Ranson M., Dive C., Blackhall F.H., Hughes A. Isolation and extraction of circulating tumor DNA from patients with small cell lung cancer. Ann. N. Y. Acad. Sci. 2008;1137:98–107. doi: 10.1196/annals.1448.020. PubMed DOI

Crowley E., Di Nicolantonio F., Loupakis F., Bardelli A. Liquid biopsy: Monitoring cancer-genetics in the blood. Nat. Rev. Clin. Oncol. 2013;10:472–484. doi: 10.1038/nrclinonc.2013.110. PubMed DOI

Nikolaev S., Lemmens L., Koessler T., Blouin J.L., Nouspikel T. Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory. Anal. Biochem. 2018;542:34–39. doi: 10.1016/j.ab.2017.11.004. PubMed DOI

Iizuka N., Sakaida I., Moribe T., Fujita N., Miura T., Stark M., Tamatsukuri S., Ishitsuka H., Uchida K., Terai S., et al. Elevated levels of circulating cell-free DNA in the blood of patients with hepatitis c virus-associated hepatocellular carcinoma. Anticancer Res. 2006;26:4713–4719. PubMed

Hindson B.J., Ness K.D., Masquelier D.A., Belgrader P., Heredia N.J., Makarewicz A.J., Bright I.J., Lucero M.Y., Hiddessen A.L., Legler T.C., et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal. Chem. 2011;83:8604–8610. doi: 10.1021/ac202028g. PubMed DOI PMC

Forshew T., Murtaza M., Parkinson C., Gale D., Tsui D.W., Kaper F., Dawson S.J., Piskorz A.M., Jimenez-Linan M., Bentley D., et al. Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Sci. Transl. Med. 2012;4:136ra168. doi: 10.1126/scitranslmed.3003726. PubMed DOI

Chan K.C., Jiang P., Chan C.W., Sun K., Wong J., Hui E.P., Chan S.L., Chan W.C., Hui D.S., Ng S.S., et al. Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing. Proc. Natl. Acad. Sci. USA. 2013;110:18761–18768. doi: 10.1073/pnas.1313995110. PubMed DOI PMC

Leary R.J., Sausen M., Kinde I., Papadopoulos N., Carpten J.D., Craig D., O’Shaughnessy J., Kinzler K.W., Parmigiani G., Vogelstein B., et al. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci. Transl. Med. 2012;4:162ra154. doi: 10.1126/scitranslmed.3004742. PubMed DOI PMC

Khakoo S., Georgiou A., Gerlinger M., Cunningham D., Starling N. Circulating tumour DNA, a promising biomarker for the management of colorectal cancer. Crit. Rev. Oncol. Hematol. 2018;122:72–82. doi: 10.1016/j.critrevonc.2017.12.002. PubMed DOI

Han W.Y., Feng X., She Q.X. Reverse gyrase functions in genome integrity maintenance by protecting DNA breaks in vivo. Int. J. Mol. Sci. 2017;18:1340. doi: 10.3390/ijms18071340. PubMed DOI PMC

El Messaoudi S., Rolet F., Mouliere F., Thierry A.R. Circulating cell free DNA: Preanalytical considerations. Clin. Chim. Acta. 2013;424:222–230. doi: 10.1016/j.cca.2013.05.022. PubMed DOI

Mittra I. Circulating nucleic acids: A new class of physiological mobile genetic elements. F1000Research. 2015;4:924. doi: 10.12688/f1000research.7095.1. PubMed DOI PMC

Mittra I., Khare N.K., Raghuram G.V., Chaubal R., Khambatti F., Gupta D., Gaikwad A., Prasannan P., Singh A., Iyer A., et al. Circulating nucleic acids damage DNA of healthy cells by integrating into their genomes. J. Biosci. 2015;40:91–111. doi: 10.1007/s12038-015-9508-6. PubMed DOI PMC

Nevers P., Saedler H. Transposable genetic elements as agents of gene instability and chromosomal rearrangements. Nature. 1977;268:109–115. doi: 10.1038/268109a0. PubMed DOI

Bahar R., Hartmann C.H., Rodriguez K.A., Denny A.D., Busuttil R.A., Dolle M.E., Calder R.B., Chisholm G.B., Pollock B.H., Klein C.A., et al. Increased cell-to-cell variation in gene expression in ageing mouse heart. Nature. 2006;441:1011–1014. doi: 10.1038/nature04844. PubMed DOI

Garcia-Olmo D.C., Dominguez C., Garcia-Arranz M., Anker P., Stroun M., Garcia-Verdugo J.M., Garcia-Olmo D. Cell-free nucleic acids circulating in the plasma of colorectal cancer patients induce the oncogenic transformation of susceptible cultured cells. Cancer Res. 2010;70:560–567. doi: 10.1158/0008-5472.CAN-09-3513. PubMed DOI

Dvorakova M., Karafiat V., Pajer P., Kluzakova E., Jarkovska K., Pekova S., Krutilkova L., Dvorak M. DNA released by leukemic cells contributes to the disruption of the bone marrow microenvironment. Oncogene. 2013;32:5201–5209. doi: 10.1038/onc.2012.553. PubMed DOI

Anker P., Lefort F., Vasioukhin V., Lyautey J., Lederrey C., Chen X.Q., Stroun M., Mulcahy H.E., Farthing M.J. K-ras mutations are found in DNA extracted from the plasma of patients with colorectal cancer. Gastroenterology. 1997;112:1114–1120. doi: 10.1016/S0016-5085(97)70121-5. PubMed DOI

De Kok J.B., van Solinge W.W., Ruers T.J., Roelofs R.W., van Muijen G.N., Willems J.L., Swinkels D.W. Detection of tumour DNA in serum of colorectal cancer patients. Scand. J. Clin. Lab. Investig. 1997;57:601–604. doi: 10.3109/00365519709055283. PubMed DOI

Kopreski M.S., Benko F.A., Kwee C., Leitzel K.E., Eskander E., Lipton A., Gocke C.D. Detection of mutant K-ras DNA in plasma or serum of patients with colorectal cancer. Br. J. Cancer. 1997;76:1293–1299. doi: 10.1038/bjc.1997.551. PubMed DOI PMC

Hibi K., Robinson C.R., Booker S., Wu L., Hamilton S.R., Sidransky D., Jen J. Molecular detection of genetic alterations in the serum of colorectal cancer patients. Cancer Res. 1998;58:1405–1407. PubMed

Lecomte T., Berger A., Zinzindohoue F., Micard S., Landi B., Blons H., Beaune P., Cugnenc P.H., Laurent-Puig P. Detection of free-circulating tumor-associated DNA in plasma of colorectal cancer patients and its association with prognosis. Int. J. Cancer. 2002;100:542–548. doi: 10.1002/ijc.10526. PubMed DOI

Ryan B.M., Lefort F., McManus R., Daly J., Keeling P.W., Weir D.G., Kelleher D. A prospective study of circulating mutant KRAS2 in the serum of patients with colorectal neoplasia: Strong prognostic indicator in postoperative follow up. Gut. 2003;52:101–108. doi: 10.1136/gut.52.1.101. PubMed DOI PMC

Leung W.K., To K.F., Man E.P., Chan M.W., Bai A.H., Hui A.J., Chan F.K., Sung J.J. Quantitative detection of promoter hypermethylation in multiple genes in the serum of patients with colorectal cancer. Am. J. Gastroenterol. 2005;100:2274–2279. doi: 10.1111/j.1572-0241.2005.50412.x. PubMed DOI

Lindforss U., Zetterquist H., Papadogiannakis N., Olivecrona H. Persistence of K-ras mutations in plasma after colorectal tumor resection. Anticancer Res. 2005;25:657–661. PubMed

Bazan V., Bruno L., Augello C., Agnese V., Calo V., Corsale S., Gargano G., Terrasi M., Schiro V., Di Fede G., et al. Molecular detection of TP53, Ki-Ras and p16INK4A promoter methylation in plasma of patients with colorectal cancer and its association with prognosis. Results of a 3-year goim (gruppo oncologico dell’italia meridionale) prospective study. Ann. Oncol. 2006;17(Suppl. 7):vii84–vii90. doi: 10.1093/annonc/mdl958. PubMed DOI

Flamini E., Mercatali L., Nanni O., Calistri D., Nunziatini R., Zoli W., Rosetti P., Gardini N., Lattuneddu A., Verdecchia G.M., et al. Free DNA and carcinoembryonic antigen serum levels: An important combination for diagnosis of colorectal cancer. Clin. Cancer Res. 2006;12:6985–6988. doi: 10.1158/1078-0432.CCR-06-1931. PubMed DOI

Frattini M., Gallino G., Signoroni S., Balestra D., Battaglia L., Sozzi G., Leo E., Pilotti S., Pierotti M.A. Quantitative analysis of plasma DNA in colorectal cancer patients: A novel prognostic tool. Ann. N. Y. Acad. Sci. 2006;1075:185–190. doi: 10.1196/annals.1368.025. PubMed DOI

Trevisiol C., Di Fabio F., Nascimbeni R., Peloso L., Salbe C., Ferruzzi E., Salerni B., Gion M. Prognostic value of circulating KRAS2 gene mutations in colorectal cancer with distant metastases. Int. J. Biol. Markers. 2006;21:223–228. doi: 10.1177/172460080602100405. PubMed DOI

Wallner M., Herbst A., Behrens A., Crispin A., Stieber P., Goke B., Lamerz R., Kolligs F.T. Methylation of serum DNA is an independent prognostic marker in colorectal cancer. Clin. Cancer Res. 2006;12:7347–7352. doi: 10.1158/1078-0432.CCR-06-1264. PubMed DOI

Boni L., Cassinotti E., Canziani M., Dionigi G., Rovera F., Dionigi R. Free circulating DNA as possible tumour marker in colorectal cancer. Surg. Oncol. 2007;16(Suppl. 1):S29–S31. doi: 10.1016/j.suronc.2007.10.004. PubMed DOI

Nakayama G., Hibi K., Kodera Y., Koike M., Fujiwara M., Nakao A. P16 methylation in serum as a potential marker for the malignancy of colorectal carcinoma. Anticancer Res. 2007;27:3367–3370. PubMed

Diehl F., Schmidt K., Choti M.A., Romans K., Goodman S., Li M., Thornton K., Agrawal N., Sokoll L., Szabo S.A., et al. Circulating mutant DNA to assess tumor dynamics. Nat. Med. 2008;14:985–990. doi: 10.1038/nm.1789. PubMed DOI PMC

Frattini M., Gallino G., Signoroni S., Balestra D., Lusa L., Battaglia L., Sozzi G., Bertario L., Leo E., Pilotti S., et al. Quantitative and qualitative characterization of plasma DNA identifies primary and recurrent colorectal cancer. Cancer Lett. 2008;263:170–181. doi: 10.1016/j.canlet.2008.03.021. PubMed DOI

Lofton-Day C., Model F., Devos T., Tetzner R., Distler J., Schuster M., Song X., Lesche R., Liebenberg V., Ebert M., et al. DNA methylation biomarkers for blood-based colorectal cancer screening. Clin. Chem. 2008;54:414–423. doi: 10.1373/clinchem.2007.095992. PubMed DOI

Schwarzenbach H., Stoehlmacher J., Pantel K., Goekkurt E. Detection and monitoring of cell-free DNA in blood of patients with colorectal cancer. Ann. N. Y. Acad. Sci. 2008;1137:190–196. doi: 10.1196/annals.1448.025. PubMed DOI

Zitt M., Muller H.M., Rochel M., Schwendinger V., Zitt M., Goebel G., Devries A., Margreiter R., Oberwalder M., Zeillinger R., et al. Circulating cell-free DNA in plasma of locally advanced rectal cancer patients undergoing preoperative chemoradiation: A potential diagnostic tool for therapy monitoring. Dis. Markers. 2008;25:159–165. doi: 10.1155/2008/598071. PubMed DOI PMC

De Vos T., Tetzner R., Model F., Weiss G., Schuster M., Distler J., Steiger K.V., Grutzmann R., Pilarsky C., Habermann J.K., et al. Circulating methylated SEPT9 DNA in plasma is a biomarker for colorectal cancer. Clin. Chem. 2009;55:1337–1346. doi: 10.1373/clinchem.2008.115808. PubMed DOI

Herbst A., Rahmig K., Stieber P., Philipp A., Jung A., Ofner A., Crispin A., Neumann J., Lamerz R., Kolligs F.T. Methylation of NEUROG1 in serum is a sensitive marker for the detection of early colorectal cancer. Am. J. Gastroenterol. 2011;106:1110–1118. doi: 10.1038/ajg.2011.6. PubMed DOI

Agostini M., Pucciarelli S., Enzo M.V., Del Bianco P., Briarava M., Bedin C., Maretto I., Friso M.L., Lonardi S., Mescoli C., et al. Circulating cell-free DNA: A promising marker of pathologic tumor response in rectal cancer patients receiving preoperative chemoradiotherapy. Ann. Surg. Oncol. 2011;18:2461–2468. doi: 10.1245/s10434-011-1638-y. PubMed DOI

Diaz L.A., Jr., Williams R.T., Wu J., Kinde I., Hecht J.R., Berlin J., Allen B., Bozic I., Reiter J.G., Nowak M.A., et al. The molecular evolution of acquired resistance to targeted egfr blockade in colorectal cancers. Nature. 2012;486:537–540. doi: 10.1038/nature11219. PubMed DOI PMC

Morgan S.R., Whiteley J., Donald E., Smith J., Eisenberg M.T., Kallam E., Kam-Morgan L. Comparison of kras mutation assessment in tumor DNA and circulating free DNA in plasma and serum samples. Clin. Med. Insights Pathol. 2012;5:15–22. doi: 10.4137/CPath.S8798. PubMed DOI PMC

Philipp A.B., Stieber P., Nagel D., Neumann J., Spelsberg F., Jung A., Lamerz R., Herbst A., Kolligs F.T. Prognostic role of methylated free circulating DNA in colorectal cancer. Int. J. Cancer. 2012;131:2308–2319. doi: 10.1002/ijc.27505. PubMed DOI

Spindler K.L., Pallisgaard N., Vogelius I., Jakobsen A. Quantitative cell-free DNA, KRAS, and BRAF mutations in plasma from patients with metastatic colorectal cancer during treatment with cetuximab and irinotecan. Clin. Cancer Res. 2012;18:1177–1185. doi: 10.1158/1078-0432.CCR-11-0564. PubMed DOI

Bai Y.Q., Liu X.J., Wang Y., Ge F.J., Zhao C.H., Fu Y.L., Lin L., Xu J.M. Correlation analysis between abundance of k-ras mutation in plasma free DNA and its correlation with clinical outcome and prognosis in patients with metastatic colorectal cancer. Zhonghua Zhong Liu Za Zhi. 2013;35:666–671. PubMed

Cassinotti E., Boni L., Segato S., Rausei S., Marzorati A., Rovera F., Dionigi G., David G., Mangano A., Sambucci D., et al. Free circulating DNA as a biomarker of colorectal cancer. Int. J. Surg. 2013;11(Suppl. 1):S54–S57. doi: 10.1016/S1743-9191(13)60017-5. PubMed DOI

Lee H.S., Hwang S.M., Kim T.S., Kim D.W., Park D.J., Kang S.B., Kim H.H., Park K.U. Circulating methylated septin 9 nucleic acid in the plasma of patients with gastrointestinal cancer in the stomach and colon. Transl. Oncol. 2013;6:290–296. doi: 10.1593/tlo.13118. PubMed DOI PMC

Spindler K.G., Appelt A.L., Pallisgaard N., Andersen R.F., Jakobsen A. Kras-mutated plasma DNA as predictor of outcome from irinotecan monotherapy in metastatic colorectal cancer. Br. J. Cancer. 2013;109:3067–3072. doi: 10.1038/bjc.2013.633. PubMed DOI PMC

Sun W., Sun Y., Zhu M., Wang Z., Zhang H., Xin Y., Jiang G., Guo X., Zhang Z., Liu Y. The role of plasma cell-free DNA detection in predicting preoperative chemoradiotherapy response in rectal cancer patients. Oncol. Rep. 2014;31:1466–1472. doi: 10.3892/or.2013.2949. PubMed DOI

Lin J.K., Lin P.C., Lin C.H., Jiang J.K., Yang S.H., Liang W.Y., Chen W.S., Chang S.C. Clinical relevance of alterations in quantity and quality of plasma DNA in colorectal cancer patients: Based on the mutation spectra detected in primary tumors. Ann. Surg. Oncol. 2014;21(Suppl. 4):S680–S686. doi: 10.1245/s10434-014-3804-5. PubMed DOI

Mohan S., Heitzer E., Ulz P., Lafer I., Lax S., Auer M., Pichler M., Gerger A., Eisner F., Hoefler G., et al. Changes in colorectal carcinoma genomes under anti-egfr therapy identified by whole-genome plasma DNA sequencing. PLoS Genet. 2014;10:e1004271. doi: 10.1371/journal.pgen.1004271. PubMed DOI PMC

Perrone F., Lampis A., Bertan C., Verderio P., Ciniselli C.M., Pizzamiglio S., Frattini M., Nucifora M., Molinari F., Gallino G., et al. Circulating free DNA in a screening program for early colorectal cancer detection. Tumori. 2014;100:115–121. doi: 10.1177/030089161410000201. PubMed DOI

Spindler K.L., Pallisgaard N., Andersen R.F., Jakobsen A. Changes in mutational status during third-line treatment for metastatic colorectal cancer—Results of consecutive measurement of cell free DNA, KRAS and BRAF in the plasma. Int. J. Cancer. 2014;135:2215–2222. doi: 10.1002/ijc.28863. PubMed DOI

Spindler K.L., Appelt A.L., Pallisgaard N., Andersen R.F., Brandslund I., Jakobsen A. Cell-free DNA in healthy individuals, noncancerous disease and strong prognostic value in colorectal cancer. Int. J. Cancer. 2014;135:2984–2991. doi: 10.1002/ijc.28946. PubMed DOI

Tham C., Chew M., Soong R., Lim J., Ang M., Tang C., Zhao Y., Ong S.Y., Liu Y. Postoperative serum methylation levels of TAC1 and SEPT9 are independent predictors of recurrence and survival of patients with colorectal cancer. Cancer. 2014;120:3131–3141. doi: 10.1002/cncr.28802. PubMed DOI

Xu J.M., Liu X.J., Ge F.J., Lin L., Wang Y., Sharma M.R., Liu Z.Y., Tommasi S., Paradiso A. KRAS mutations in tumor tissue and plasma by different assays predict survival of patients with metastatic colorectal cancer. J. Exp. Clin. Cancer Res. 2014;33:104. doi: 10.1186/s13046-014-0104-7. PubMed DOI PMC

Carpinetti P., Donnard E., Bettoni F., Asprino P., Koyama F., Rozanski A., Sabbaga J., Habr-Gama A., Parmigiani R.B., Galante P.A., et al. The use of personalized biomarkers and liquid biopsies to monitor treatment response and disease recurrence in locally advanced rectal cancer after neoadjuvant chemoradiation. Oncotarget. 2015;6:38360–38371. doi: 10.18632/oncotarget.5256. PubMed DOI PMC

Lin P.C., Lin J.K., Lin C.H., Lin H.H., Yang S.H., Jiang J.K., Chen W.S., Chou C.C., Tsai S.F., Chang S.C. Clinical relevance of plasma DNA methylation in colorectal cancer patients identified by using a genome-wide high-resolution array. Ann. Surg. Oncol. 2015;22(Suppl. 3):S1419–S1427. doi: 10.1245/s10434-014-4277-2. PubMed DOI

Reinert T., Scholer L.V., Thomsen R., Tobiasen H., Vang S., Nordentoft I., Lamy P., Kannerup A.S., Mortensen F.V., Stribolt K., et al. Analysis of circulating tumour DNA to monitor disease burden following colorectal cancer surgery. Gut. 2016;65:625–634. doi: 10.1136/gutjnl-2014-308859. PubMed DOI

Sefrioui D., Sarafan-Vasseur N., Beaussire L., Baretti M., Gangloff A., Blanchard F., Clatot F., Sabourin J.C., Sesboue R., Frebourg T., et al. Clinical value of chip-based digital-PCR platform for the detection of circulating DNA in metastatic colorectal cancer. Dig. Liver Dis. 2015;47:884–890. doi: 10.1016/j.dld.2015.05.023. PubMed DOI

Siravegna G., Mussolin B., Buscarino M., Corti G., Cassingena A., Crisafulli G., Ponzetti A., Cremolini C., Amatu A., Lauricella C., et al. Clonal evolution and resistance to egfr blockade in the blood of colorectal cancer patients. Nat. Med. 2015;21:795–801. doi: 10.1038/nm.3870. PubMed DOI PMC

Spindler K.L., Pallisgaard N., Andersen R.F., Brandslund I., Jakobsen A. Circulating free DNA as biomarker and source for mutation detection in metastatic colorectal cancer. PLoS ONE. 2015;10:e0108247. doi: 10.1371/journal.pone.0108247. PubMed DOI PMC

Liu Y., Chew M.H., Tham C.K., Tang C.L., Ong S.Y., Zhao Y. Methylation of serum SST gene is an independent prognostic marker in colorectal cancer. Am. J. Cancer Res. 2016;6:2098–2108. PubMed PMC

Matthaios D., Balgkouranidou I., Karayiannakis A., Bolanaki H., Xenidis N., Amarantidis K., Chelis L., Romanidis K., Chatzaki A., Lianidou E., et al. Methylation status of the APC and RASSF1A promoter in cell-free circulating DNA and its prognostic role in patients with colorectal cancer. Oncol. Lett. 2016;12:748–756. doi: 10.3892/ol.2016.4649. PubMed DOI PMC

El Messaoudi S., Mouliere F., Du Manoir S., Bascoul-Mollevi C., Gillet B., Nouaille M., Fiess C., Crapez E., Bibeau F., Theillet C., et al. Circulating DNA as a strong multimarker prognostic tool for metastatic colorectal cancer patient management care. Clin. Cancer Res. 2016;22:3067–3077. doi: 10.1158/1078-0432.CCR-15-0297. PubMed DOI

Tie J., Wang Y., Tomasetti C., Li L., Springer S., Kinde I., Silliman N., Tacey M., Wong H.L., Christie M., et al. Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer. Sci. Transl. Med. 2016;8:346ra392. doi: 10.1126/scitranslmed.aaf6219. PubMed DOI PMC

Agah S., Akbari A., Talebi A., Masoudi M., Sarveazad A., Mirzaei A., Nazmi F. Quantification of plasma cell-free circulating DNA at different stages of colorectal cancer. Cancer Investig. 2017;35:625–632. doi: 10.1080/07357907.2017.1408814. PubMed DOI

Bhangu J.S., Taghizadeh H., Braunschmid T., Bachleitner-Hofmann T., Mannhalter C. Circulating cell-free DNA in plasma of colorectal cancer patients—A potential biomarker for tumor burden. Surg. Oncol. 2017;26:395–401. doi: 10.1016/j.suronc.2017.08.001. PubMed DOI

Herbst A., Vdovin N., Gacesa S., Ofner A., Philipp A., Nagel D., Holdt L.M., Op den Winkel M., Heinemann V., Stieber P., et al. Methylated free-circulating HPP1 DNA is an early response marker in patients with metastatic colorectal cancer. Int. J. Cancer. 2017;140:2134–2144. doi: 10.1002/ijc.30625. PubMed DOI

Kloten V., Ruchel N., Bruchle N.O., Gasthaus J., Freudenmacher N., Steib F., Mijnes J., Eschenbruch J., Binnebosel M., Knuchel R., et al. Liquid biopsy in colon cancer: Comparison of different circulating DNA extraction systems following absolute quantification of KRAS mutations using intplex allele-specific PCR. Oncotarget. 2017;8:86253–86263. doi: 10.18632/oncotarget.21134. PubMed DOI PMC

Li J., Dittmar R.L., Xia S., Zhang H., Du M., Huang C.C., Druliner B.R., Boardman L., Wang L. Cell-free DNA copy number variations in plasma from colorectal cancer patients. Mol. Oncol. 2017;11:1099–1111. doi: 10.1002/1878-0261.12077. PubMed DOI PMC

Pereira A.A.L., Morelli M.P., Overman M., Kee B., Fogelman D., Vilar E., Shureiqi I., Raghav K., Eng C., Manuel S., et al. Clinical utility of circulating cell-free DNA in advanced colorectal cancer. PLoS ONE. 2017;12:e0183949. doi: 10.1371/journal.pone.0183949. PubMed DOI PMC

Yamauchi M., Urabe Y., Ono A., Miki D., Ochi H., Chayama K. Serial profiling of circulating tumor DNA for optimization of anti-VEGF chemotherapy in metastatic colorectal cancer patients. Int. J. Cancer. 2018;142:1418–1426. doi: 10.1002/ijc.31154. PubMed DOI

Liu L., Toung J.M., Jassowicz A.F., Vijayaraghavan R., Kang H., Zhang R., Kruglyak K.M., Huang H.J., Hinoue T., Shen H., et al. Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification. Ann. Oncol. 2018;29:1445–1453. doi: 10.1093/annonc/mdy119. PubMed DOI PMC

Takayama Y., Suzuki K., Muto Y., Ichida K., Fukui T., Kakizawa N., Ishikawa H., Watanabe F., Hasegawa F., Saito M., et al. Monitoring circulating tumor DNA revealed dynamic changes in KRAS status in patients with metastatic colorectal cancer. Oncotarget. 2018;9:24398–24413. doi: 10.18632/oncotarget.25309. PubMed DOI PMC

Toledo R.A., Garralda E., Mitsi M., Pons T., Monsech J., Vega E., Otero A., Albarran M.I., Banos N., Duran Y., et al. Exome sequencing of plasma DNA portrays the mutation landscape of colorectal cancer and discovers mutated VEGFR2 receptors as modulators of antiangiogenic therapies. Clin. Cancer Res. 2018 doi: 10.1158/1078-0432.CCR-18-0103. PubMed DOI

Schou J.V., Larsen F.O., Sorensen B.S., Abrantes R., Boysen A.K., Johansen J.S., Jensen B.V., Nielsen D.L., Spindler K.L. Circulating cell-free DNA as predictor of treatment failure after neoadjuvant chemo-radiotherapy before surgery in patients with locally advanced rectal cancer. Ann. Oncol. 2018;29:610–615. doi: 10.1093/annonc/mdx778. PubMed DOI

Sclafani F., Chau I., Cunningham D., Hahne J.C., Vlachogiannis G., Eltahir Z., Lampis A., Braconi C., Kalaitzaki E., De Castro D.G., et al. Kras and braf mutations in circulating tumour DNA from locally advanced rectal cancer. Sci. Rep. 2018;8:1445. doi: 10.1038/s41598-018-19212-5. PubMed DOI PMC

Boysen A.K., Sorensen B.S., Lefevre A.C., Abrantes R., Johansen J.S., Jensen B.V., Schou J.V., Larsen F.O., Nielsen D., Taflin H., et al. Methodological development and biological observations of cell free DNA with a simple direct fluorescent assay in colorectal cancer. Clin. Chim. Acta. 2018;487:107–111. doi: 10.1016/j.cca.2018.09.029. PubMed DOI

Myint N.N.M., Verma A.M., Fernandez-Garcia D., Sarmah P., Tarpey P.S., Al-Aqbi S.S., Cai H., Trigg R., West K., Howells L.M., et al. Circulating tumor DNA in patients with colorectal adenomas: Assessment of detectability and genetic heterogeneity. Cell Death Dis. 2018;9:894. doi: 10.1038/s41419-018-0934-x. PubMed DOI PMC

Demuth C., Spindler K.G., Johansen J.S., Pallisgaard N., Nielsen D., Hogdall E., Vittrup B., Sorensen B.S. Measuring KRAS mutations in circulating tumor DNA by droplet digital PCR and next-generation sequencing. Transl. Oncol. 2018;11:1220–1224. doi: 10.1016/j.tranon.2018.07.013. PubMed DOI PMC

Rokni P., Shariatpanahi A.M., Sakhinia E., Kerachian M.A. BMP3 promoter hypermethylation in plasma-derived cell-free DNA in colorectal cancer patients. Genes Genom. 2018;40:423–428. doi: 10.1007/s13258-017-0644-2. PubMed DOI

Fu B., Yan P., Zhang S., Lu Y., Pan L., Tang W., Chen S., Chen S., Zhang A., Liu W. Cell-free circulating methylated SEPT9 for noninvasive diagnosis and monitoring of colorectal cancer. Dis. Markers. 2018;2018:6437104. doi: 10.1155/2018/6437104. PubMed DOI PMC

Molparia B., Oliveira G., Wagner J.L., Spencer E.G., Torkamani A. A feasibility study of colorectal cancer diagnosis via circulating tumor DNA derived CNV detection. PLoS ONE. 2018;13:e0196826. doi: 10.1371/journal.pone.0196826. PubMed DOI PMC

Gallardo-Gomez M., Moran S., de la Cadena M.P., Martinez-Zorzano V.S., Rodriguez-Berrocal F.J., Rodriguez-Girondo M., Esteller M., Cubiella J., Bujanda L., Castells A., et al. A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples o. Clin. Epigenet. 2018;10:53. doi: 10.1186/s13148-018-0487-y. PubMed DOI PMC

Nunes S.P., Moreira-Barbosa C., Salta S., Palma de Sousa S., Pousa I., Oliveira J., Soares M., Rego L., Dias T., Rodrigues J., et al. Cell-free DNA methylation of selected genes allows for early detection of the major cancers in women. Cancers. 2018;10:357. doi: 10.3390/cancers10100357. PubMed DOI PMC

Song T., Mao F., Shi L., Xu X., Wu Z., Zhou J., Xiao M. Urinary measurement of circulating tumor DNA for treatment monitoring and prognosis of metastatic colorectal cancer patients. Clin. Chem. Lab. Med. 2018 doi: 10.1515/cclm-2017-0675. PubMed DOI

Yang Y.C., Wang D., Jin L., Yao H.W., Zhang J.H., Wang J., Zhao X.M., Shen C.Y., Chen W., Wang X.L., et al. Circulating tumor DNA detectable in early- and late-stage colorectal cancer patients. Biosci. Rep. 2018;38 doi: 10.1042/BSR20180322. PubMed DOI PMC

Suehiro Y., Hashimoto S., Higaki S., Fujii I., Suzuki C., Hoshida T., Matsumoto T., Yamaoka Y., Takami T., Sakaida I., et al. Blood free-circulating DNA testing by highly sensitive methylation assay to diagnose colorectal neoplasias. Oncotarget. 2018;9:16974–16987. doi: 10.18632/oncotarget.24768. PubMed DOI PMC

Sun X., Huang T.X., Cheng F.S., Huang K.B., Liu M., He W., Li M.W., Zhang X.N., Xu M.Y., Chen S.F., et al. Monitoring colorectal cancer following surgery using plasma circulating tumor DNA. Oncol. Lett. 2018;15:4365–4375. doi: 10.3892/ol.2018.7837. PubMed DOI PMC

Thomsen C.B., Hansen T.F., Andersen R.F., Lindebjerg J., Jensen L.H., Jakobsen A. Monitoring the effect of first line treatment in RAS/RAF mutated metastatic colorectal cancer by serial analysis of tumor specific DNA in plasma. J. Exp. Clin. Cancer Res. 2018;37:55. doi: 10.1186/s13046-018-0723-5. PubMed DOI PMC

Furuki H., Yamada T., Takahashi G., Iwai T., Koizumi M., Shinji S., Yokoyama Y., Takeda K., Taniai N., Uchida E. Evaluation of liquid biopsies for detection of emerging mutated genes in metastatic colorectal cancer. Eur. J. Surg. Oncol. 2018;44:975–982. doi: 10.1016/j.ejso.2018.01.224. PubMed DOI

Klein-Scory S., Maslova M., Pohl M., Eilert-Micus C., Schroers R., Schmiegel W., Baraniskin A. Significance of liquid biopsy for monitoring and therapy decision of colorectal cancer. Transl. Oncol. 2018;11:213–220. doi: 10.1016/j.tranon.2017.12.010. PubMed DOI PMC

Scholer L.V., Reinert T., Orntoft M.W., Kassentoft C.G., Arnadottir S.S., Vang S., Nordentoft I., Knudsen M., Lamy P., Andreasen D., et al. Clinical implications of monitoring circulating tumor DNA in patients with colorectal cancer. Clin. Cancer Res. 2017;23:5437–5445. doi: 10.1158/1078-0432.CCR-17-0510. PubMed DOI

Vandeputte C., Kehagias P., El Housni H., Ameye L., Laes J.F., Desmedt C., Sotiriou C., Deleporte A., Puleo F., Geboes K., et al. Circulating tumor DNA in early response assessment and monitoring of advanced colorectal cancer treated with a multi-kinase inhibitor. Oncotarget. 2018;9:17756–17769. doi: 10.18632/oncotarget.24879. PubMed DOI PMC

Allegra C.J., Jessup J.M., Somerfield M.R., Hamilton S.R., Hammond E.H., Hayes D.F., McAllister P.K., Morton R.F., Schilsky R.L. American society of clinical oncology provisional clinical opinion: Testing for kras gene mutations in patients with metastatic colorectal carcinoma to predict response to anti-epidermal growth factor receptor monoclonal antibody therapy. J. Clin. Oncol. 2009;27:2091–2096. doi: 10.1200/JCO.2009.21.9170. PubMed DOI

Lievre A., Bachet J.B., Le Corre D., Boige V., Landi B., Emile J.F., Cote J.F., Tomasic G., Penna C., Ducreux M., et al. KRAS mutation status is predictive of response to cetuximab therapy in colorectal cancer. Cancer Res. 2006;66:3992–3995. doi: 10.1158/0008-5472.CAN-06-0191. PubMed DOI

Sidransky D., Tokino T., Hamilton S.R., Kinzler K.W., Levin B., Frost P., Vogelstein B. Identification of ras oncogene mutations in the stool of patients with curable colorectal tumors. Science. 1992;256:102–105. doi: 10.1126/science.1566048. PubMed DOI

Lehmann-Werman R., Neiman D., Zemmour H., Moss J., Magenheim J., Vaknin-Dembinsky A., Rubertsson S., Nellgard B., Blennow K., Zetterberg H., et al. Identification of tissue-specific cell death using methylation patterns of circulating DNA. Proc. Natl. Acad. Sci. USA. 2016;113:E1826–E1834. doi: 10.1073/pnas.1519286113. PubMed DOI PMC

Sozzi G., Conte D., Leon M., Ciricione R., Roz L., Ratcliffe C., Roz E., Cirenei N., Bellomi M., Pelosi G., et al. Quantification of free circulating DNA as a diagnostic marker in lung cancer. J. Clin. Oncol. 2003;21:3902–3908. doi: 10.1200/JCO.2003.02.006. PubMed DOI

Sozzi G., Conte D., Mariani L., Lo Vullo S., Roz L., Lombardo C., Pierotti M.A., Tavecchio L. Analysis of circulating tumor DNA in plasma at diagnosis and during follow-up of lung cancer patients. Cancer Res. 2001;61:4675–4678. PubMed

Valtorta E., Misale S., Sartore-Bianchi A., Nagtegaal I.D., Paraf F., Lauricella C., Dimartino V., Hobor S., Jacobs B., Ercolani C., et al. KRAS gene amplification in colorectal cancer and impact on response to EGFR-targeted therapy. Int. J. Cancer. 2013;133:1259–1265. doi: 10.1002/ijc.28106. PubMed DOI

Misale S., Yaeger R., Hobor S., Scala E., Janakiraman M., Liska D., Valtorta E., Schiavo R., Buscarino M., Siravegna G., et al. Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer. Nature. 2012;486:532–536. doi: 10.1038/nature11156. PubMed DOI PMC

Bardelli A., Corso S., Bertotti A., Hobor S., Valtorta E., Siravegna G., Sartore-Bianchi A., Scala E., Cassingena A., Zecchin D., et al. Amplification of the MET receptor drives resistance to anti-EGFR therapies in colorectal cancer. Cancer Discov. 2013;3:658–673. doi: 10.1158/2159-8290.CD-12-0558. PubMed DOI PMC

Scherer F., Kurtz D.M., Newman A.M., Stehr H., Craig A.F., Esfahani M.S., Lovejoy A.F., Chabon J.J., Klass D.M., Liu C.L., et al. Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA. Sci. Transl. Med. 2016;8:364ra155. doi: 10.1126/scitranslmed.aai8545. PubMed DOI PMC

Yi Z., Ma F., Li C., Chen R., Yuan L., Sun X., Guan X., Li L., Liu B., Guan Y., et al. Landscape of somatic mutations in different subtypes of advanced breast cancer with circulating tumor DNA analysis. Sci. Rep. 2017;7:5995. doi: 10.1038/s41598-017-06327-4. PubMed DOI PMC

Fan G., Zhang K., Yang X., Ding J., Wang Z., Li J. Prognostic value of circulating tumor DNA in patients with colon cancer: Systematic review. PLoS ONE. 2017;12:e0171991. doi: 10.1371/journal.pone.0171991. PubMed DOI PMC

Fujii T., Barzi A., Sartore-Bianchi A., Cassingena A., Siravegna G., Karp D.D., Piha-Paul S.A., Subbiah V., Tsimberidou A.M., Huang H.J., et al. Mutation-enrichment next-generation sequencing for quantitative detection of KRAS mutations in urine cell-free DNA from patients with advanced cancers. Clin. Cancer Res. 2017;23:3657–3666. doi: 10.1158/1078-0432.CCR-16-2592. PubMed DOI PMC

Ahlquist D.A., Skoletsky J.E., Boynton K.A., Harrington J.J., Mahoney D.W., Pierceall W.E., Thibodeau S.N., Shuber A.P. Colorectal cancer screening by detection of altered human DNA in stool: Feasibility of a multitarget assay panel. Gastroenterology. 2000;119:1219–1227. doi: 10.1053/gast.2000.19580. PubMed DOI

Ahlquist D.A., Zou H., Domanico M., Mahoney D.W., Yab T.C., Taylor W.R., Butz M.L., Thibodeau S.N., Rabeneck L., Paszat L.F., et al. Next-generation stool DNA test accurately detects colorectal cancer and large adenomas. Gastroenterology. 2012;142:248–256. doi: 10.1053/j.gastro.2011.10.031. PubMed DOI PMC

Thierry A.R., El Messaoudi S., Gahan P.B., Anker P., Stroun M. Origins, structures, and functions of circulating DNA in oncology. Cancer Metastasis Rev. 2016;35:347–376. doi: 10.1007/s10555-016-9629-x. PubMed DOI PMC

ClinicalTrials.gov U.S. National Library of Medicine. [(accessed on 6 November 2014)];2015 Available online: https://clinicaltrials.Gov/ct2./show/nct02284633.

ClinicalTrials.gov U.S. National Library of Medicine. [(accessed on 19 April 2016)];2016 Available online: https://clinicaltrials.Gov/ct2./show/nct02743910.

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...