Spectrum of CFTR mutations in Chechen cystic fibrosis patients: high frequency of c.1545_1546delTA (p.Tyr515X; 1677delTA) and c.274G>A (p.Glu92Lys, E92K) mutations in North Caucasus

. 2019 Mar 21 ; 20 (1) : 44. [epub] 20190321

Jazyk angličtina Země Anglie, Velká Británie Médium electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid30898088
Odkazy

PubMed 30898088
PubMed Central PMC6429818
DOI 10.1186/s12881-019-0785-z
PII: 10.1186/s12881-019-0785-z
Knihovny.cz E-zdroje

BACKGROUND: Cystic fibrosis (CF; OMIM #219700) is a common autosomal recessive disease caused by pathogenic variants (henceforward mutations) in the cystic fibrosis transmembrane conductance regulator gene (CFTR). The spectrum and frequencies of CFTR mutations vary among different populations. Characterization of the specific distribution of CFTR mutations can be used to optimize genetic counseling, foster reproductive choices, and facilitate the introduction of mutation-specific therapies. Chechens are a distinct Caucasian ethnic group of the Nakh peoples that originated from the North Caucasus. Chechens are one of the oldest ethnic groups in the Caucasus, the sixth largest ethnic group in the Russian Federation (RF), and constitute the majority population of the Chechen Republic (Chechnya). The spectrum of CFTR mutations in a representative cohort of Chechen CF patients and healthy individuals was analyzed. METHODS: Molecular genetic analysis of 34 CFTR mutations (representing approx. 80-85% of mutations in multiethnic CF populations of the RF) was performed in 32 CF patients from 31 unrelated Chechen families living in Chechnya. One hundred randomly chosen healthy Chechens were analyzed for the 15 most common "Russian" mutations. The clinical symptoms in Chechen CF patients with different CFTR genotypes were investigated. RESULTS: High frequencies of c.1545_1546delTA (p.Tyr515X; 1677delTA) (52 out of 64 CFTR alleles tested; 81.3%) and c.274G > A (p.Glu92Lys, E92K) (8/64, 12.5%) mutations were found. Twenty patients were homozygous for the c.1545_1546delTA mutation, and eight were compound heterozygous for the c.1545_1546delTA and c.274G > A mutations. Three carriers of the c.1545_1546delTA mutation were also found in the cohort of 100 apparently healthy Chechens (frequency - 0.015). The c.1545_1546delTA and c.274G > A mutations are linked to the same haplotype (22-7-16-13) of intragenic Short Tandem Repeat markers, i.e., IVS1CA, IVS6aGATT, IVS8CA, and IVS17bCA. CONCLUSIONS: The distribution of CFTR mutations in the Chechen CF population is unique regarding the high frequency of mutations c.1545_1546delTA and c.274G > A (more than 90% of the mutant alleles). The c.274G > A mutation is associated with a less severe course of CF than that observed in c.1545_1546delTA homozygotes. Testing for these two variants can be proposed as the first step of CF DNA diagnosis in the Chechen population.

Zobrazit více v PubMed

The Clinical and Functional TRanslation of CFTR (CFTR2). http://cftr2.org. Accessed 9 Jan 2019.

Bobadilla JL, Macek М, Jr, Fine JP, Farrell PM. Cystic fibrosis: a worldwide analysis of CFTR mutations - correlation with incidence data and application to screening. Hum Mutat. 2002;19(6):575–606. doi: 10.1002/humu.10041. PubMed DOI

Alexeev VP. The origin of Caucasus peoples. Moscow (Russia): Mysl. (In Russ.); 1974.

Fedorov YA. Historical ethnography of the North Caucasus. Moscow (Russia): Moscow University Press. (In Russ.); 1983.

All-Russia Population Census. http://www.gks.ru/free_doc/new_site/perepis2010/croc/perepis_itogi1612.htm. Accessed 26 Sept 2018.

Akhmadov YZ. History of the Chechnya from the earliest times until the end of XVIII century. Moscow: «Mir domu tvoemu» Publishing House; 2001. p. 424. ISBN 5-87553-033-2. (In Russ.)

Balanovsky O, Dibirova K, Dybo A, Mudrak O, Frolova S, Pocheshkhova E, Haber M, Platt D, Schurr T, Haak W, Kuznetsova M, Radzhabov M, Balaganskaya O, Romanov A, Zakharova T, Soria Hernanz DF, Zalloua P, Koshel S, Ruhlen M, Renfrew C, Wells RS, Tyler-Smith C, Balanovska E, Genographic Consortium Parallel evolution of genes and languages in the Caucasus region. Mol Biol Evol. 2011;28(10):2905–2920. doi: 10.1093/molbev/msr126. PubMed DOI PMC

Kuznetsov VA. Introduction to the study of Caucasus (historical and ethnological reviews of the ethnic groups of the North Caucasus) Vladikavkaz: Publisher Gassiev V.A; 2004. p. 184.

Jaimoukha A. The Chechens (a handbook) in Caucasus World Peoples of the Caucasus. Series editor: Awde N. Taylor & Francis e-Library, 2005. Taylor & Francis e-Library, 2005. ISBN 0-203-68299-8 (Adobe e-Reader Format) ISBN 0-415-32328-2 (Print Edition) http://inozmi.spilnotv.com/books/sprak/Chechen/Chechens.A.Handbook.pdf. Accessed 9 Jan 2019.

Petrova NV, Kondratyeva EI, Krasovsky SA, Polyakov AV, Ivachshenko TE, Pavlov AE, Zinchenko RA, Ginter EK, Kutsev SI, Odinokova ON, Nazarenko LP, Kapranov NI, Sherman VD, Amelina EL, Asherova IK, Gembitskaya TE, Ilyenkova NA, Karimova IP, Merzlova NB, Namazova-Baranova LS, Neretina AF, Nikonova VS, Orlov AV, Protasova TA, Semykin SY, Sergienko DF, Simonova OI, Shabalova LA, Kashirskaya NY. National Consensus Project «cystic fibrosis: definition, diagnostic criteria, treatment» section «genetics of cystic fibrosis. Molecular genetic diagnosis of cystic fibrosis». Med Genetics. 2016;15(11):29–45.

Petrova NV, Kashirskaya NY, Vasilieva TA, Timkovskaya EE, Voronkova AY, Shabalova LA, Kondratyeva EI, Sherman VD, Kapranov NI, Zinchenko RA, Ginter EK, Makaov AKM, Kerem B. High proportion of W1282X mutation in CF patients from Karachai-Cherkessia. J Cyst Fibros. 2016;15(3):e28–32. 10.1016/j.jcf.2016.02.003. PubMed

Petrova NV. Analysis of four polymorphisms in CFTR gene in families of cystic fibrosis patients. Med Genet. 2006;5(12):27–32.

Excoffier L, Laval G, Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online. 2005;1:47–50. PubMed PMC

Ivashchenko TE, Baranov VS. Biohemical and molecular genetic basics of cystic fibrosis pathogenesis. Saint-Petersburg: «Intermedika»; 2002. p. 256.

Stepanova AA, Polyakov AV, Abrukova AV, Savaskina EN. Mutation p.E92K is the primary cause of cystic fibrosis in Chuvashes. Russ J Genet. 2012;48(7):731–737. doi: 10.1134/S1022795412060166. PubMed DOI

Cystic Fibrosis Patients Registry in Russian Federation. 2015 / Kondratyeva EI, Krasovsky SA, Voronkova AY, Amelina EL, Chernyak AV, Kashirskaya NY. (Eds.). – Moscow: «Medpraktika-M» Publishing House. 2016. 72 p. ISBN 978-5-98803-383-7. (In Russ.).

Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, et al. The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia. PLoS Genet. 2015;11(4):e1005068. doi: 10.1371/journal.pgen.1005068. PubMed DOI PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...