Overexpression of a developing xylem cDNA library in transgenic poplar generates high mutation rate specific to wood formation
Jazyk angličtina Země Velká Británie, Anglie Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.
PubMed
31799778
PubMed Central
PMC7207001
DOI
10.1111/pbi.13309
Knihovny.cz E-zdroje
- Klíčová slova
- fox hunting system, genetics, poplar,
- MeSH
- buněčná stěna genetika metabolismus MeSH
- dřevo * genetika metabolismus MeSH
- genová knihovna MeSH
- lignin metabolismus MeSH
- mutační rychlost MeSH
- Populus * genetika metabolismus MeSH
- regulace genové exprese u rostlin genetika MeSH
- rostlinné proteiny genetika metabolismus MeSH
- xylém genetika metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
- Názvy látek
- lignin MeSH
- rostlinné proteiny MeSH
We investigated feasibility of the Full-length complementary DNA OvereXpression (FOX) system as a mutagenesis approach in poplar, using developing xylem tissue. The main goal was to assess the overall mutation rate and if the system will increase instances of mutants affected in traits linked to the xylem tissue. Indeed, we found a high mutation rate of 17.7%, whereas 80% of all mutants were significantly affected in cellulose, lignin and/or hemicellulose. Cell wall biosynthesis is a major process occurring during xylem development. Enrichment of mutants affected in cell wall composition suggests that the tissue source for the FOX library influenced the occurrence of mutants affected in a trait linked to this tissue. Additionally, we found that FLcDNAs from mutants affected in cell wall composition were homologous to genes known to be involved in cell wall biosynthesis and most recovered FLcDNAs corresponded to genes whose native expression was highest in xylem. We characterized in detail a mutant line with increased diameter. The phenotype was caused by a poplar homolog of LONELY GUY 1 (LOG1), which encodes an enzyme in cytokinin biosynthesis and significantly increased xylem proliferation. The causative role of LOG1 in the observed phenotype was further reaffirmed by elevated cytokinin concentration in the mutant and recapitulation overexpression experiment wherein multiple independent lines phenocopied the original FOX mutant. Our experiments show that the FOX approach can be efficiently used for gene discovery and molecular interrogation of traits specific to woody perennial growth and development.
Department of Biology Eastern Illinois University Charleston IL USA
Institute of Experimental Botany Czech Academy of Sciences Prague Czech Republic
Nuclear Materials Science Los Alamos National Laboratory Los Alamos NM USA
Zobrazit více v PubMed
Alonso, J.M. , Stepanova, A.N. , Leisse, T.J. , Kim, C.J. , Chen, H. , Shinn, P. , Stevenson, D.K. PubMed
Aulakh, S.S. , Veilleux, R.E. , Tang, G. and Flinn, B.S. (2015) Characterization of a potato activation‐tagged mutant, nikku, and its partial revertant. Planta, 241, 1481–1495. PubMed
Busov, V. , Yordanov, Y. , Gou, J. , Meilan, R. , Ma, C. , Regan, S. and Strauss, S. (2011) Activation tagging is an effective gene tagging system in Populus. Tree Genet. Genomes, 7, 91–101.
Carninci, P. , Kvam, C. , Kitamura, A. , Ohsumi, T. , Okazaki, Y. , Itoh, M. , Kamiya, M. PubMed
Chan, J. , Mao, G. , Smertenko, A. , Hussey, P.J. , Naldrett, M. , Bottrill, A. and Lloyd, C.W. (2003) Identification of a MAP65 isoform involved in directional expansion of plant cells. FEBS Lett. 534, 161–163. PubMed
Dash, M. , Yordanov, Y.S. , Georgieva, T. , Tschaplinski, T.J. , Yordanova, E. and Busov, V. (2017) Poplar Ptab ZIP 1‐like enhances lateral root formation and biomass growth under drought stress. Plant J. 89, 692–705. PubMed
De Rybel, B. , Möller, B. , Yoshida, S. , Grabowicz, I. , de Reuille, P.B. , Boeren, S. , Smith, R.S. PubMed
De Rybel, B. , Adibi, M. , Breda, A.S. , Wendrich, J.R. , Smit, M.E. , Novák, O. , Yamaguchi, N. PubMed
Dobrev, P.I. and Kamınek, M. (2002) Fast and efficient separation of cytokinins from auxin and abscisic acid and their purification using mixed‐mode solid‐phase extraction. J. Chromatogr. A, 950, 21–29. PubMed
Dobrev, P.I. and Vankova, R. (2012) Quantification of abscisic acid, cytokinin, and auxin content in saltstressed plant tissues. In Plant Salt Tolerance ( Shabala, S. and Cuin, T. , eds), pp. 251–261. Totowa, NJ: Humana Press (Springer). PubMed
Du, J. and Groover, A. (2010) Transcriptional regulation of secondary growth and wood formation. J. Integr. Plant Biol. 52, 17–27. PubMed
Dubouzet, J.G. , Maeda, S. , Sugano, S. , Ohtake, M. , Hayashi, N. , Ichikawa, T. , Kondou, Y. PubMed PMC
Fischer, U. , Kucukoglu, M. , Helariutta, Y. and Bhalerao, R.P. (2019) The dynamics of cambial stem cell activity. Annu. Rev. Plant Biol. 70, 293–319. PubMed
Fujita, M. , Mizukado, S. , Fujita, Y. , Ichikawa, T. , Nakazawa, M. , Seki, M. , Matsui, M. PubMed
Guerriero, G. , Sergeant, K. and Hausman, J.‐F. (2013) Integrated‐omics: a powerful approach to understanding the heterogeneous lignification of fibre crops. Int. J. Mol. Sci. 14, 10958–10978. PubMed PMC
Hakata, M. , Nakamura, H. , Iida‐Okada, K. , Miyao, A. , Kajikawa, M. , Imai‐Toki, N. , Pang, J.
Han, K.‐H. , Meilan, R. , Ma, C. and Strauss, S. (2000) An PubMed
Hardtke, C.S. , Ckurshumova, W. , Vidaurre, D.P. , Singh, S.A. , Stamatiou, G. , Tiwari, S.B. , Hagen, G. PubMed
Harrison, E.J. , Bush, M. , Plett, J.M. , McPhee, D.P. , Vitez, R. , O’Malley, B. , Sharma, V.
Himuro, Y. , Tanaka, H. , Hashiguchi, M. , Ichikawa, T. , Nakazawa, M. , Seki, M. , Fujita, M. PubMed
Ichikawa, T. , Nakazawa, M. , Kawashima, M. , Iizumi, H. , Kuroda, H. , Kondou, Y. , Tsuhara, Y. PubMed
Immanen, J. , Nieminen, K. , Silva, H.D. , Rojas, F.R. , Meisel, L.A. , Silva, H. , Albert, V.A. PubMed PMC
Immanen, J. , Nieminen, K. , Smolander, O.‐P. , Kojima, M. , Serra, J.A. , Koskinen, P. , Zhang, J. PubMed
Ioio, R.D. , Linhares, F.S. and Sabatini, S. (2008) Emerging role of cytokinin as a regulator of cellular differentiation. Curr. Opin. Plant Biol. 11, 23–27. PubMed
Kondou, Y. , Higuchi, M. , Takahashi, S. , Sakurai, T. , Ichikawa, T. , Kuroda, H. , Yoshizumi, T. PubMed
Kondou, Y. , Higuchi, M. and Matsui, M. (2010) High‐throughput characterization of plant gene functions by using gain‐of‐function technology. Annu. Rev. Plant Biol. 61, 373–393. PubMed
Kumar, S. , Stecher, G. and Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33, 1870–1874. PubMed PMC
Kurakawa, T. , Ueda, N. , Maekawa, M. , Kobayashi, K. , Kojima, M. , Nagato, Y. , Sakakibara, H. PubMed
Kuroha, T. , Tokunaga, H. , Kojima, M. , Ueda, N. , Ishida, T. , Nagawa, S. , Fukuda, H. PubMed PMC
Liu, Y. , Ji, X. , Nie, X. , Qu, M. , Zheng, L. , Tan, Z. , Zhao, H. PubMed
Lloyd, C. and Chan, J. (2004) Microtubules and the shape of plants to come. Nat. Rev. Mol. Cell Biol. 5, 13–23. PubMed
Lu, N. , Carter, J.D. , Boluarte Medina, T. , Holt, S.H. , Manrique‐Carpintero, N.C. , Upham, K.T. , Pereira, A. PubMed
Mathews, H. , Clendennen, S.K. , Caldwell, C.G. , Liu, X.L. , Connors, K. , Matheis, N. , Schuster, D.K. PubMed PMC
Nakamura, H. , Hakata, M. , Amano, K. , Miyao, A. , Toki, N. , Kajikawa, M. , Pang, J. PubMed
Nieminen, K. , Immanen, J. , Laxell, M. , Kauppinen, L. , Tarkowski, P. , Dolezal, K. , Tähtiharju, S. PubMed PMC
Nieminen, K. , Robischon, M. , Immanen, J. and Helariutta, Y. (2012) Towards optimizing wood development in bioenergy trees. New Phytol. 194, 46–53. PubMed
Ohashi‐Ito, K. , Saegusa, M. , Iwamoto, K. , Oda, Y. , Katayama, H. , Kojima, M. , Sakakibara, H. PubMed
Öhman, D. , Demedts, B. , Kumar, M. , Gerber, L. , Gorzsás, A. , Goeminne, G. , Hedenström, M. PubMed
Sakakibara, H. (2006) Cytokinins: activity, biosynthesis, and translocation. Annu. Rev. Plant Biol. 57, 431–449. PubMed
Schmittgen, T.D. and Livak, K.J. (2008) Analyzing real‐time PCR data by the comparative CT method. Nat. Protoc. 3, 1101–1108. PubMed
Seki, M. and Shinozaki, K. (2009) Functional genomics using RIKEN Arabidopsis thaliana full‐length cDNAs. J. Plant. Res. 122, 355–366. PubMed
Seki, M. , Carninci, P. , Nishiyama, Y. , Hayashizaki, Y. and Shinozaki, K. (1998) High‐efficiency cloning of Arabidopsis full‐length cDNA by biotinylated CAP trapper. Plant J. 15, 707–720. PubMed
Seki, M. , Narusaka, M. , Kamiya, A. , Ishida, J. , Satou, M. , Sakurai, T. , Nakajima, M. PubMed
Shi, R. , Wang, J.P. , Lin, Y.‐C. , Li, Q. , Sun, Y.‐H. , Chen, H. , Sederoff, R.R. PubMed
Sundell, D. , Street, N.R. , Kumar, M. , Mellerowicz, E.J. , Kucukoglu, M. , Johnsson, C. , Kumar, V. PubMed PMC
Sykes, R. , Yung, M. , Novaes, E. , Kirst, M. , Peter, G. and Davis, M. (2009) High-throughput screening of plant cell-wall composition using pyrolysis molecular beam mass spectroscopy. In Biofuels ( Mielenz, J.R. , ed.), pp. 169–183. Totowa, NJ: Humana Press. PubMed
Thompson, J.D. , Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position‐specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673–4680. PubMed PMC
Tokunaga, H. , Kojima, M. , Kuroha, T. , Ishida, T. , Sugimoto, K. , Kiba, T. and Sakakibara, H. (2012) Arabidopsis lonely guy (LOG) multiple mutants reveal a central role of the LOG‐dependent pathway in cytokinin activation. Plant J. 69, 355–365. PubMed
Toledo‐Ortiz, G. , Huq, E. and Quail, P.H. (2003) The Arabidopsis basic/helix‐loop‐helix transcription factor family. Plant Cell, 15, 1749–1770. PubMed PMC
Tsai, C.J. , Harding, S.A. , Tschaplinski, T.J. , Lindroth, R.L. and Yuan, Y. (2006) Genome‐wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. New Phytol. 172, 47–62. PubMed
Ursache, R. , Nieminen, K. and Helariutta, Y. (2013) Genetic and hormonal regulation of cambial development. Physiol. Plant. 147, 36–45. PubMed
Wang, H. , Jiang, C. , Wang, C. , Yang, Y. , Yang, L. , Gao, X. and Zhang, H. (2014) Antisense expression of the fasciclin‐like arabinogalactan protein FLA6 gene in Populus inhibits expression of its homologous genes and alters stem biomechanics and cell wall composition in transgenic trees. J. Exp. Bot. 66, 1291–1302. PubMed PMC
Yordanov, Y.S. , Regan, S. and Busov, V. (2010) Members of the lateral organ boundaries domain transcription factor family are involved in the regulation of secondary growth in Populus. Plant Cell, 22, 3662–3677. PubMed PMC
Yordanov, Y.S. , Ma, C. , Strauss, S.H. and Busov, V.B. (2014) Early bud‐break 1 (EBB1) is a regulator of release from seasonal dormancy in poplar trees. Proc. Natl Acad. Sci. 111, 10001–10006. PubMed PMC
York, W.S. and O’Neill, M.A. (2008) Biochemical control of xylan biosynthesis—which end is up? Curr. Opin. Plant Biol. 11, 258–265. PubMed
Zhu, Y. , Machleder, E. , Chenchik, A. , Li, R. and Siebert, P. (2001) Reverse transcriptase template switching: a SMART™ approach for full‐length cDNA library construction. Biotechniques, 30, 892–897. PubMed
Zubko, E. , Adams, C.J. , Macháèková, I. , Malbeck, J. , Scollan, C. and Meyer, P. (2002) Activation tagging identifies a gene from Petunia hybrida responsible for the production of active cytokinins in plants. Plant J. 29, 797–808. PubMed