Germline CDKN1B Loss-of-Function Variants Cause Pediatric Cushing's Disease With or Without an MEN4 Phenotype
Language English Country United States Media print
Document type Journal Article, Research Support, N.I.H., Intramural, Research Support, Non-U.S. Gov't
PubMed
32232325
PubMed Central
PMC7190031
DOI
10.1210/clinem/dgaa160
PII: 5813889
Knihovny.cz E-resources
- Keywords
- ACTH, CDKN1B, Cushing’s disease, MEN4, corticotropinoma, pituitary neuroendocrine tumor,
- MeSH
- Biomarkers analysis MeSH
- Cushing Syndrome etiology pathology MeSH
- Child MeSH
- Adult MeSH
- Phenotype MeSH
- Cyclin-Dependent Kinase Inhibitor p27 genetics MeSH
- Humans MeSH
- Adolescent MeSH
- Young Adult MeSH
- Multiple Endocrine Neoplasia complications genetics pathology MeSH
- Follow-Up Studies MeSH
- Prognosis MeSH
- DNA Copy Number Variations * MeSH
- Germ-Line Mutation * MeSH
- Check Tag
- Child MeSH
- Adult MeSH
- Humans MeSH
- Adolescent MeSH
- Young Adult MeSH
- Male MeSH
- Female MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Research Support, N.I.H., Intramural MeSH
- Names of Substances
- Biomarkers MeSH
- CDKN1B protein, human MeSH Browser
- Cyclin-Dependent Kinase Inhibitor p27 MeSH
CONTEXT: Germline loss-of-function CDKN1B gene variants cause the autosomal dominant syndrome of multiple endocrine neoplasia type 4 (MEN4). Even though pituitary neuroendocrine tumors are a well-known component of the syndrome, only 2 cases of Cushing's disease (CD) have so far been described in this setting. AIM: To screen a large cohort of CD patients for CDKN1B gene defects and to determine their functional effects. PATIENTS: We screened 211 CD patients (94.3% pediatric) by germline whole-exome sequencing (WES) only (n = 157), germline and tumor WES (n = 27), Sanger sequencing (n = 6), and/or germline copy number variant (CNV) analysis (n = 194). Sixty cases were previously unpublished. Variant segregation was investigated in the patients' families, and putative pathogenic variants were functionally characterized. RESULTS: Five variants of interest were found in 1 patient each: 1 truncating (p.Q107Rfs*12) and 4 nontruncating variants, including 3 missense changes affecting the CDKN1B protein scatter domain (p.I119T, p.E126Q, and p.D136G) and one 5' untranslated region (UTR) deletion (c.-29_-26delAGAG). No CNVs were found. All cases presented early (10.5 ± 1.3 years) and apparently sporadically. Aside from colon adenocarcinoma in 1 carrier, no additional neoplasms were detected in the probands or their families. In vitro assays demonstrated protein instability and disruption of the scatter domain of CDKN1B for all variants tested. CONCLUSIONS: Five patients with CD and germline CDKN1B variants of uncertain significance (n = 2) or pathogenic/likely pathogenic (n = 3) were identified, accounting for 2.6% of the patients screened. Our finding that germline CDKN1B loss-of-function may present as apparently sporadic, isolated pediatric CD has important implications for clinical screening and genetic counselling.
College of Medicine Sulaimani University Sulaimani Kurdistan Iraq
Newborn Screening Program Wadsworth Center New York State Department of Health Albany New York
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Pellegata NS, Quintanilla-Martinez L, Siggelkow H, et al. . Germ-line mutations in p27Kip1 cause a multiple endocrine neoplasia syndrome in rats and humans. Proc Natl Acad Sci U S A. 2006;103(42):15558-15563. PubMed PMC
Georgitsi M, Raitila A, Karhu A, et al. . Germline CDKN1B/p27Kip1 mutation in multiple endocrine neoplasia. J Clin Endocrinol Metab. 2007;92(8):3321-3325. PubMed
Agarwal SK, Mateo CM, Marx SJ. Rare germline mutations in cyclin-dependent kinase inhibitor genes in multiple endocrine neoplasia type 1 and related states. J Clin Endocrinol Metab. 2009;94(5):1826-1834. PubMed PMC
Molatore S, Marinoni I, Lee M, et al. . A novel germline CDKN1B mutation causing multiple endocrine tumors: clinical, genetic and functional characterization. Hum Mutat. 2010;31(11):E1825-E1835. PubMed PMC
Belar O, De La Hoz C, Pérez-Nanclares G, Castaño L, Gaztambide S; Spanish MEN1 Group Novel mutations in MEN1, CDKN1B and AIP genes in patients with multiple endocrine neoplasia type 1 syndrome in Spain. Clin Endocrinol (Oxf). 2012;76(5):719-724. PubMed
Malanga D, De Gisi S, Riccardi M, et al. . Functional characterization of a rare germline mutation in the gene encoding the cyclin-dependent kinase inhibitor p27Kip1 (CDKN1B) in a Spanish patient with multiple endocrine neoplasia-like phenotype. Eur J Endocrinol. 2012;166(3):551-560. PubMed
Occhi G, Regazzo D, Trivellin G, et al. . A novel mutation in the upstream open reading frame of the CDKN1B gene causes a MEN4 phenotype. Plos Genet. 2013;9(3):e1003350. PubMed PMC
Pardi E, Mariotti S, Pellegata NS, et al. . Functional characterization of a CDKN1B mutation in a Sardinian kindred with multiple endocrine neoplasia type 4 (MEN4). Endocr Connect. 2015;4(1):1-8. PubMed PMC
Sambugaro S, Di Ruvo M, Ambrosio MR, et al. . Early onset acromegaly associated with a novel deletion in CDKN1B 5’UTR region. Endocrine. 2015;49(1):58-64. PubMed
Polyak K, Kato JY, Solomon MJ, et al. . p27Kip1, a cyclin-Cdk inhibitor, links transforming growth factor-beta and contact inhibition to cell cycle arrest. Genes Dev. 1994;8(1):9-22. PubMed
Chu IM, Hengst L, Slingerland JM. The Cdk inhibitor p27 in human cancer: prognostic potential and relevance to anticancer therapy. Nat Rev Cancer. 2008;8(4):253-267. PubMed
Dahia PL, Aguiar RC, Honegger J, et al. . Mutation and expression analysis of the p27/kip1 gene in corticotrophin-secreting tumours. Oncogene. 1998;16(1):69-76. PubMed
Lidhar K, Korbonits M, Jordan S, et al. . Low expression of the cell cycle inhibitor p27Kip1 in normal corticotroph cells, corticotroph tumors, and malignant pituitary tumors. J Clin Endocrinol Metab. 1999;84(10):3823-3830. PubMed
Korbonits M, Chahal HS, Kaltsas G, et al. . Expression of phosphorylated p27(Kip1) protein and Jun activation domain-binding protein 1 in human pituitary tumors. J Clin Endocrinol Metab. 2002;87(6):2635-2643. PubMed
Molatore S, Pellegata NS. The MENX syndrome and p27: relationships with multiple endocrine neoplasia. In: Martini L, ed. Prog Brain Res. Vol 182 Oxford, UK: Elsevier; 2010:295-320. PubMed
Frederiksen A, Rossing M, Hermann P, Ejersted C, Thakker RV, Frost M. Clinical features of multiple endocrine neoplasia type 4: novel pathogenic variant and review of published cases. J Clin Endocrinol Metab. 2019;104(9):3637-3646. PubMed PMC
Igreja S, Chahal HS, Akker SA, et al. . Assessment of p27 (cyclin-dependent kinase inhibitor 1B) and aryl hydrocarbon receptor-interacting protein (AIP) genes in multiple endocrine neoplasia (MEN1) syndrome patients without any detectable MEN1 gene mutations. Clin Endocrinol (Oxf). 2009;70(2):259-264. PubMed
Stratakis CA, Tichomirowa MA, Boikos S, et al. . The role of germline AIP, MEN1, PRKAR1A, CDKN1B and CDKN2C mutations in causing pituitary adenomas in a large cohort of children, adolescents, and patients with genetic syndromes. Clin Genet. 2010;78(5):457-463. PubMed PMC
Tichomirowa MA, Lee M, Barlier A, et al. . Cyclin-dependent kinase inhibitor 1B (CDKN1B) gene variants in AIP mutation-negative familial isolated pituitary adenoma kindreds. Endocr Relat Cancer. 2012;19(3):233-241. PubMed
Hernández-Ramírez LC, Gam R, Valdés N, et al. . Loss-of-function mutations in the CABLES1 gene are a novel cause of Cushing’s disease. Endocr Relat Cancer. 2017;24(8):379-392. PubMed PMC
Trivellin G, Correa RR, Batsis M, et al. . Screening for GPR101 defects in pediatric pituitary corticotropinomas. Endocr Relat Cancer. 2016;23(5):357-365. PubMed PMC
Faucz FR, Tirosh A, Tatsi C, et al. . Somatic USP8 gene mutations are a common cause of pediatric Cushing disease. J Clin Endocrinol Metab. 2017;102(8):2836-2843. PubMed PMC
Hernández-Ramírez LC, Tatsi C, Lodish MB, et al. . Corticotropinoma as a component of carney complex. J Endocr Soc. 2017;1(7):918-925. PubMed PMC
Makri A, Bonella MB, Keil MF, et al. . Children with MEN1 gene mutations may present first (and at a young age) with Cushing disease. Clin Endocrinol (Oxf). 2018;89(4):437-443. PubMed PMC
Cohen M, Persky R, Stegemann R, et al. . Germline USP8 mutation associated with pediatric Cushing disease and other clinical features: a new syndrome. J Clin Endocrinol Metab. 2019;104(10):4676-4682. PubMed PMC
Tatsi C, Pankratz N, Lane J, et al. . Large genomic aberrations in corticotropinomas are associated with greater aggressiveness. J Clin Endocrinol Metab. 2019;104(5):1792-1801. PubMed PMC
Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010;38(16):e164. PubMed PMC
Liu X, Jian X, Boerwinkle E. dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions. Hum Mutat. 2011;32(8):894-899. PubMed PMC
Robinson JT, Thorvaldsdóttir H, Winckler W, et al. . Integrative genomics viewer. Nat Biotechnol. 2011;29(1):24-26. PubMed PMC
Kopanos C, Tsiolkas V, Kouris A, et al. . VarSome: the human genomic variant search engine. Bioinformatics. 2019;35(11):1978-1980. PubMed PMC
Karczewski KJ, Francioli LC, Tiao G, et al. . Variation across 141 456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes. bioRxiv 2019:531210.
Borsari S, Pardi E, Pellegata NS, et al. . Loss of p27 expression is associated with MEN1 gene mutations in sporadic parathyroid adenomas. Endocrine. 2017;55(2):386-397. PubMed
Chang BL, Zheng SL, Isaacs SD, et al. . A polymorphism in the CDKN1B gene is associated with increased risk of hereditary prostate cancer. Cancer Res. 2004;64(6):1997-1999. PubMed
Pappa V, Papageorgiou S, Papageorgiou E, et al. . A novel p27 gene mutation in a case of unclassified myeloproliferative disorder. Leuk Res. 2005;29(2):229-231. PubMed
Lauter KB, Arnold A. Mutational analysis of CDKN1B, a candidate tumor-suppressor gene, in refractory secondary/tertiary hyperparathyroidism. Kidney Int. 2008;73(10):1137-1140. PubMed
Ojeda D, Lakhal B, Fonseca DJ, et al. . Sequence analysis of the CDKN1B gene in patients with premature ovarian failure reveals a novel mutation potentially related to the phenotype. Fertil Steril 2011; 95:2658-2660 e2651. PubMed
Ruiz-Heredia Y, Sánchez-Vega B, Onecha E, et al. . Mutational screening of newly diagnosed multiple myeloma patients by deep targeted sequencing. Haematologica. 2018;103(11):e544-e548. PubMed PMC
Gummlich L, Kähne T, Naumann M, Kilic E, Jung K, Dubiel W. New insights into the mechanism of COP9 Signalosome-Cullin-RING ubiquitin-ligase pathway deregulation in urological cancers. Int Rev Cell Mol Biol. 2016;323:181-229. PubMed
Daly AF, Jaffrain-Rea ML, Ciccarelli A, et al. . Clinical characterization of familial isolated pituitary adenomas. J Clin Endocrinol Metab. 2006;91(9):3316-3323. PubMed
Alrezk R, Hannah-Shmouni F, Stratakis CA. MEN4 and CDKN1B mutations: the latest of the MEN syndromes. Endocr Relat Cancer. 2017;24(10):T195-T208. PubMed PMC
The Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012; 487(7407):330-337. PubMed PMC
Esteban-Jurado C, Vila-Casadesús M, Garre P, et al. . Whole-exome sequencing identifies rare pathogenic variants in new predisposition genes for familial colorectal cancer. Genet Med. 2015;17(2):131-142. PubMed PMC
Brandi ML, Gagel RF, Angeli A, et al. . Guidelines for diagnosis and therapy of MEN type 1 and type 2. J Clin Endocrinol Metab. 2001;86(12):5658-5671. PubMed
McAllister SS, Becker-Hapak M, Pintucci G, Pagano M, Dowdy SF. Novel p27(kip1) C-terminal scatter domain mediates Rac-dependent cell migration independent of cell cycle arrest functions. Mol Cell Biol. 2003;23(1):216-228. PubMed PMC
Besson A, Gurian-West M, Schmidt A, Hall A, Roberts JM. p27Kip1 modulates cell migration through the regulation of RhoA activation. Genes Dev. 2004;18(8):862-876. PubMed PMC
Fujita N, Sato S, Katayama K, Tsuruo T. Akt-dependent phosphorylation of p27Kip1 promotes binding to 14-3-3 and cytoplasmic localization. J Biol Chem. 2002;277(32): 28706-28713. PubMed
Costa-Guda J, Marinoni I, Molatore S, Pellegata NS, Arnold A. Somatic mutation and germline sequence abnormalities in CDKN1B, encoding p27Kip1, in sporadic parathyroid adenomas. J Clin Endocrinol Metab. 2011;96(4):E701-E706. PubMed PMC
Elston MS, Meyer-Rochow GY, Dray M, Swarbrick M, Conaglen JV. Early onset primary hyperparathyroidism associated with a novel germline mutation in CDKN1B. Case Rep Endocrinol. 2015;2015:510985. PubMed PMC
Bugalho MJ, Domingues R. Uncommon association of cerebral meningioma, parathyroid adenoma and papillary thyroid carcinoma in a patient harbouring a rare germline variant in the CDKN1B gene. BMJ Case Rep 2016; 2016:bcr2015213934. PubMed PMC
Richards S, Aziz N, Bale S, et al. ; ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405-424. PubMed PMC
Russo AA, Jeffrey PD, Patten AK, Massagué J, Pavletich NP. Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex. Nature. 1996;382(6589):325-331. PubMed
Connor MK, Kotchetkov R, Cariou S, et al. . CRM1/Ran-mediated nuclear export of p27(Kip1) involves a nuclear export signal and links p27 export and proteolysis. Mol Biol Cell. 2003;14(1):201-213. PubMed PMC
Sekimoto T, Fukumoto M, Yoneda Y. 14-3-3 suppresses the nuclear localization of threonine 157-phosphorylated p27(Kip1). EMBO J. 2004;23(9):1934-1942. PubMed PMC
Al-Hebshi NN, Li S, Nasher AT, et al. . Exome sequencing of oral squamous cell carcinoma in users of Arabian snuff reveals novel candidates for driver genes. Int J Cancer. 2016;139(2): 363-372. PubMed PMC
Martin D, Abba MC, Molinolo AA, et al. . The head and neck cancer cell oncogenome: a platform for the development of precision molecular therapies. Oncotarget. 2014;5(19):8906-8923. PubMed PMC
Occhi G, Trivellin G, Ceccato F, et al. . Prevalence of AIP mutations in a large series of sporadic Italian acromegalic patients and evaluation of CDKN1B status in acromegalic patients with multiple endocrine neoplasia. Eur J Endocrinol. 2010;163(3):369-376. PubMed
Landa I, Montero-Conde C, Malanga D, et al. . Allelic variant at -79 (C>T) in CDKN1B (p27Kip1) confers an increased risk of thyroid cancer and alters mRNA levels. Endocr Relat Cancer. 2010;17(2):317-328. PubMed
Capasso M, McDaniel LD, Cimmino F, et al. . The functional variant rs34330 of CDKN1B is associated with risk of neuroblastoma. J Cell Mol Med. 2017;21(12):3224-3230. PubMed PMC
Ma H, Jin G, Hu Z, et al. . Variant genotypes of CDKN1A and CDKN1B are associated with an increased risk of breast cancer in Chinese women. Int J Cancer. 2006;119(9):2173-2178. PubMed
Driver KE, Song H, Lesueur F, et al. ; Studies in Epidemiology and Risks of Cancer Heredity (SEARCH) Team Association of single-nucleotide polymorphisms in the cell cycle genes with breast cancer in the British population. Carcinogenesis. 2008;29(2):333-341. PubMed PMC
Canbay E, Eraltan IY, Cercel A, et al. . CCND1 and CDKN1B polymorphisms and risk of breast cancer. Anticancer Res. 2010;30(7):3093-3098. PubMed
Wang W, Spitz MR, Yang H, Lu C, Stewart DJ, Wu X. Genetic variants in cell cycle control pathway confer susceptibility to lung cancer. Clin Cancer Res. 2007;13(19):5974-5981. PubMed
Cai H, Xiang YB, Qu S, et al. . Association of genetic polymorphisms in cell-cycle control genes and susceptibility to endometrial cancer among Chinese women. Am J Epidemiol. 2011;173(11):1263-1271. PubMed PMC
Liu F, Wei YG, Luo LM, et al. . Genetic variants of p21 and p27 and hepatocellular cancer risk in a Chinese Han population: a case-control study. Int J Cancer. 2013;132(9):2056-2064. PubMed
Cheng XK, Wang XJ, Li XD, Ren XQ. Genetic association between the cyclin-dependent kinase inhibitor gene p27/Kip1 polymorphism (rs34330) and cancer susceptibility: a meta-analysis. Sci Rep. 2017;7(1):44871. PubMed PMC
Sekiya T, Bronstein MD, Benfini K, et al. . p27 variant and corticotropinoma susceptibility: a genetic and in vitro study. Endocr Relat Cancer. 2014;21(3):395-404. PubMed
Li G, Sturgis EM, Wang LE, et al. . Association between the V109G polymorphism of the p27 gene and the risk and progression of oral squamous cell carcinoma. Clin Cancer Res. 2004;10(12 Pt 1):3996-4002. PubMed
Schöndorf T, Eisele L, Göhring UJ, et al. . The V109G polymorphism of the p27 gene CDKN1B indicates a worse outcome in node-negative breast cancer patients. Tumour Biol. 2004;25(5-6):306-312. PubMed
Naidu R, Har YC, Taib NA. P27 V109G Polymorphism is associated with lymph node metastases but not with increased risk of breast cancer. J Exp Clin Cancer Res. 2007;26(1):133-140. PubMed
Camargo-Kosugi CM, da Silva ID, Sato H, et al. . The V109G polymorphism in the p27 gene is associated with endometriosis. Eur J Obstet Gynecol Reprod Biol. 2009;145(2):180-183. PubMed
Mohamed FZ, Hussien YM, AlBakry MM, Mohamed RH, Said NM. Role of DNA repair and cell cycle control genes in ovarian cancer susceptibility. Mol Biol Rep. 2013;40(5):3757-3768. PubMed
Halkova T, Dvorakova S, Sykorova V, et al. . Polymorphisms in selected DNA repair genes and cell cycle regulating genes involved in the risk of papillary thyroid carcinoma. Cancer Biomark. 2016;17(1):97-106. PubMed
Schumacher FR, Al Olama AA, Berndt SI, et al. ; Profile Study; Australian Prostate Cancer BioResource (APCB); IMPACT Study; Canary PASS Investigators; Breast and Prostate Cancer Cohort Consortium (BPC3); PRACTICAL (Prostate Cancer Association Group to Investigate Cancer-Associated Alterations in the Genome) Consortium; Cancer of the Prostate in Sweden (CAPS); Prostate Cancer Genome-wide Association Study of Uncommon Susceptibility Loci (PEGASUS); Genetic Associations and Mechanisms in Oncology (GAME-ON)/Elucidating Loci Involved in Prostate Cancer Susceptibility (ELLIPSE) Consortium. Association analyses of more than 140 000 men identify 63 new prostate cancer susceptibility loci. Nat Genet. 2018;50(7):928-936. PubMed PMC
Mahajan A, Taliun D, Thurner M, et al. . Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps. Nat Genet. 2018;50(11):1505-1513. PubMed PMC
Wei F, Xu J, Tang L, et al. . p27(Kip1) V109G polymorphism and cancer risk: a systematic review and meta-analysis. Cancer Biother Radiopharm. 2012;27(10):665-671. PubMed PMC
Barbieri RB, Bufalo NE, Secolin R, et al. . Polymorphisms of cell cycle control genes influence the development of sporadic medullary thyroid carcinoma. Eur J Endocrinol. 2014;171(6): 761-767. PubMed
Pasquali D, Circelli L, Faggiano A, et al. . CDKN1B V109G polymorphism a new prognostic factor in sporadic medullary thyroid carcinoma. Eur J Endocrinol. 2011;164(3):397-404. PubMed
Kibel AS, Suarez BK, Belani J, et al. . CDKN1A and CDKN1B polymorphisms and risk of advanced prostate carcinoma. Cancer Res. 2003;63(9):2033-2036. PubMed
Lu Y, Gao K, Zhang M, et al. . Genetic Association Between CDKN1B rs2066827 Polymorphism and Susceptibility to Cancer. Medicine (Baltimore). 2015;94(46):e1217. PubMed PMC
Francisco G, Gonçalves FT, Luiz OC, et al. . Polymorphisms in the p27kip-1 and prohibitin genes denote novel genes associated with melanoma risk in Brazil, a high ultraviolet index region. Melanoma Res. 2013;23(3):231-236. PubMed
Circelli L, Ramundo V, Marotta V, et al. ; Multidisciplinary Group for NeuroEndocrine Tumours of Naples Prognostic role of the CDNK1B V109G polymorphism in multiple endocrine neoplasia type 1. J Cell Mol Med. 2015;19(7): 1735-1741. PubMed PMC
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