LYS3 encodes a prolamin-box-binding transcription factor that controls embryo growth in barley and wheat
Status PubMed-not-MEDLINE Jazyk angličtina Země Anglie, Velká Británie Médium print
Typ dokumentu časopisecké články
PubMed
32508376
PubMed Central
PMC7263734
DOI
10.1016/j.jcs.2020.102965
PII: S0733-5210(19)31037-9
Knihovny.cz E-zdroje
- Klíčová slova
- (DAF), Days after flowering, (DOF), DNA binding with one zinc finger, (PBF), Prolamin-box binding factor, (TILLING), Targeting induced local lesions in genomes, High lysine, Large embryo, PBF, SIFT), Sorting intolerant from tolerant, Shrunken endosperm,
- Publikační typ
- časopisecké články MeSH
Mutations at the LYS3 locus in barley have multiple effects on grain development, including an increase in embryo size and a decrease in endosperm starch content. The gene underlying LYS3 was identified by genetic mapping and mutations in this gene were identified in all four barley lys3 alleles. LYS3 encodes a transcription factor called Prolamin Binding Factor (PBF). Its role in controlling embryo size was confirmed using wheat TILLING mutants. To understand how PBF controls embryo development, we studied its spatial and temporal patterns of expression in developing grains. The PBF gene is expressed in both the endosperm and the embryos, but the timing of expression in these organs differs. PBF expression in wild-type embryos precedes the onset of embryo enlargement in lys3 mutants, suggesting that PBF suppresses embryo growth. We predicted the down-stream target genes of PBF in wheat and found them to be involved in a wide range of biological processes, including organ development and starch metabolism. Our work suggests that PBF may influence embryo size and endosperm starch synthesis via separate gene control networks.
Department of Genetics University of Leicester Adrian Building University Road Leicester LE1 7RH UK
Department of Plant Science and Biotechnology Abia State University PMB 2000 Uturu Nigeria
John Innes Centre Norwich Research Park Norwich NR4 7UH UK
NIAB Genetics and Breeding Huntington Road Cambridge CB3 0LE UK
School of Biosciences University of Birmingham Edgbaston Birmingham B15 2TT UK
Zobrazit více v PubMed
Allison M.J. Amylase activity and endosperm hardness of high lysine barleys. J. Inst. Brew. 1978;84:231–232.
Cook F., Hughes N., Nibau C., Orman-Ligeza B., Schatlowski N., Uauy C., Trafford K. Barley lys3 mutants are unique amongst shrunken-endosperm mutants in having abnormally large embryos. J. Cereal. Sci. 2018;82:16–24. PubMed PMC
Deggerdal A., Klemsdal S.S., Olsen O.A. The effect of the high-lysine genes of the barley mutants Risø1508 and 527 on embryo development. Physiol. Plantarum. 1986;68:410–418.
Doll H. Genetic studies of high lysine barley mutants. In: Gaul H., editor. Barley Genetics III. Proceedings of the Third International Barley Genetics Symposium. Verlag Karl Thiemig; Munich: 1976. pp. 542–546.
Dracatos P.M., Bartoš J., Elmansour H., Singh D., Karafiátová M., Zhang P., Steuernagel B., Svačina R., Cobbin J.C.A., Clark B., Hoxha S., Khatkar M.S., Doležel J., Wulff B.B., Park R.F. The coiled-coil NLR Rph1, confers leaf rust resistance in barley cultivar Sudan. Plant Physiol. 2019;179:1362–1372. PubMed PMC
Fulton T.M., Chunwongse J., Tanksley S.D. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol. Biol. Rep. 1995;13:207–209.
Gabert V.M., Jorgensen H., Brunsgaard G., Eggum B.O., Jensen J. The nutritional value of new high-lysine barley varieties determined with rats and young pigs. Can. J. Anim. Sci. 1996;76:443–450.
Harrington S.A., Backhaus A.E., Singh A., Hassani-Pak K., Uauy C. Validation and characterisation of a wheat GENIE3 network using an independent RNA-Seq dataset. 2019. DOI
Ingversen J., Koie B., Doll H. Induced seed protein mutant of barley. Experientia. 1973;29:1151–1152.
Jung W.Y., Kim S.G., Lee J.S., Kim H.K., Son B.G., Kim J.W., Suh J.W. Effect of feeding high gamma-aminobutyric acid-containing giant embryo black sticky rice (Oryza sativa L.) on anxiety-related behavior of C57BL/6 Mice. J. Med. Food. 2017;20:777–781. PubMed
Kubaláková M., Valárik M., Bartoš J., Vrána J., Číhalíková J., Molnár-Láng M., Doležel J. Analysis and sorting of rye (Secale cereale L.) chromosomes using flow cytometry. Genome. 2003;46:893–905. PubMed
Langfelder P., Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinf. 2008;9:559. doi: 10.1186/1471-2105-9-559. PubMed DOI PMC
Lee Y-M. Black Rice with Giant Embryo Attenuates Obesity-Associated Metabolic Disorders in ob/ob Mice. Journal of Agricultural and Food Chemistry. 2016;64:2492–2497. doi: 10.1021/acs.jafc.5b05361. PubMed DOI
Lee G., Piao R., Lee Y. Identification and characterization of LARGE EMBRYO, a new gene controlling embryo size in rice (Oryza sativa L.) Rice. 2019;12:22. PubMed PMC
Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754–1760. PubMed PMC
Lysák M.A., Číhalíková J., Kubaláková M., Šimková H., Künzel G., Doležel J. Flow karyotyping and sorting of mitotic chromosomes of barley (Hordeum vulgare L.) Chrom. Res. 1999;7:431–444. PubMed
Mena M., Vicente-Carbajosa J., Schmidt R.J., Carbonero P. An endosperm-specific DOF protein from barley, highly conserved in wheat, binds to and activates transcription from the prolamin-box of a native B-hordein promoter in barley endosperm. Plant J. 1998;16:53–62. PubMed
Mena M., Cejudo F.J., Isabel-Lamoneda I., Carbonero P. A role for the DOF transcription factor BPBF in the regulation of gibberellin-responsive genes in barley aleurone. Plant Physiol. 2002;130:111–119. PubMed PMC
Moehs C.P., Austill W.J., Holm A., Large T.A.G., Loeffler D., Mullenberg J., Schnable P.S., Skinner W., Boxtel J., Wu L., McGuire C. Development of decreased-gluten wheat enabled by determination of the genetic basis of lys3a barley. Plant Physiol. 2019;179:1692–1703. PubMed PMC
Munck L. The case of high-lysine barley breeding. In: Shewry P.R., editor. Barley: Genetics, Biochemistry, Molecular Biology and Biotechnology. CAB International; Wallingford Oxon: 1992. pp. 573–601.
Munck L., Jespersen B.M. The multiple uses of barley endosperm mutants in plant breeding for quality and for revealing functionality in nutrition and food technology. In: Shu Q.Y., editor. Induced Plant Mutations in the Genomics Era. Proceedings of an International Joint Food and Agriculture Organisation/International Atomic Energy Agency Symposium, 2008. Food and Agriculture Organisation of the United Nations; Rome: 2009. pp. 182–186.
Nagasawa N., Hibara K., Heppard E.P., Vander Velden K.A., Luck S., Beatty M., Nagato Y., Sakai H. GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice. Plant J. 2013;75:592–605. PubMed
Opanowicz M., Hands P., Betts D., Parker M.L., Toole G.A., Mills E.N., Doonan J.H., Drea S. Endosperm development in Brachypodium distachyon. J. Exp. Bot. 2011;62:735–748. PubMed PMC
Ramírez-González R.H., Borrill P., Lang D., Harrington S.A., Brinton J., Venturini L., Davey M., Jacobs J., van Ex F., Pasha A., Khedikar Y., Robinson S.J., Cory A.T., Florio T., Concia L., Juery C., Schoonbeek H., Steuernagel B., Xiang D., Ridout C.J., Chalhoub B., Mayer K.F.X., Benhamed M., Latrasse D., Bendahmane A., International Wheat Genome Sequencing Consortium, Wulff B.B.H., Appels R., Tiwari V., Datla R., Choulet F., Pozniak C.J., Provart N.J., Sharpe A.G., Paux E., Spannagl M., Bräutigam A., Uauy C. The transcriptional landscape of polyploid wheat. Science. 2018;17:361. PubMed
Šimková H., Svensson J.T., Condamine P., Hřibová E., Suchánková P., Bhat P.R., Bartoš J., Šafář J., Close T.J., Doležel J. Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley. BMC Genom. 2008;9:294. PubMed PMC
Steuernagel B., Vrána J., Karafiátová M., Wulff B.B.H., Doležel J. Rapid gene isolation using MutChromSeq. Methods Mol. Biol. 2017;1659:231–243. PubMed
Suzuki M., Sato Y., Wu S., Kang B.-H., McCarty D.R. Conserved functions of the MATE transporter BIG EMBRYO1 in regulation of lateral organ size and initiation rate. Plant Cell. 2015;27:2288–2300. PubMed PMC
Tallberg A. Amino acid composition in endosperm and embryo of a barley variety and its high lysine mutant. Hereditas. 1977;87:43–46.
Wu Y., Messing J. Rapid divergence of prolamin gene promotors of maize after gene amplification and dispersal. Genetics. 2012;192:507–519. PubMed PMC
Zhang Z., Zheng X., Yang J., Messing J., Wu Y. Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. Unit. States Am. 2016;113:10842–10847. PubMed PMC
Chromosome analysis and sorting