Small RNAs as Fundamental Players in the Transference of Information During Bacterial Infectious Diseases

. 2020 ; 7 () : 101. [epub] 20200616

Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic-ecollection

Typ dokumentu časopisecké články, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid32613006

Communication shapes life on Earth. Transference of information has played a paramount role on the evolution of all living or extinct organisms since the appearance of life. Success or failure in this process will determine the prevalence or disappearance of a certain set of genes, the basis of Darwinian paradigm. Among different molecules used for transmission or reception of information, RNA plays a key role. For instance, the early precursors of life were information molecules based in primitive RNA forms. A growing field of research has focused on the contribution of small non-coding RNA forms due to its role on infectious diseases. These are short RNA species that carry out regulatory tasks in cis or trans. Small RNAs have shown their relevance in fine tuning the expression and activity of important regulators of essential genes for bacteria. Regulation of targets occurs through a plethora of mechanisms, including mRNA stabilization/destabilization, driving target mRNAs to degradation, or direct binding to regulatory proteins. Different studies have been conducted during the interplay of pathogenic bacteria with several hosts, including humans, animals, or plants. The sRNAs help the invader to quickly adapt to the change in environmental conditions when it enters in the host, or passes to a free state. The adaptation is achieved by direct targeting of the pathogen genes, or subversion of the host immune system. Pathogens trigger also an immune response in the host, which has been shown as well to be regulated by a wide range of sRNAs. This review focuses on the most recent host-pathogen interaction studies during bacterial infectious diseases, providing the perspective of the pathogen.

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Agliano F., Rathinam V. A., Medvedev A. E., Vanaja S. K., Vella A. T. (2019). Long noncoding RNAs in host-pathogen interactions. PubMed DOI PMC

Ágoston R., Soni K., Jesudhasan P. R., Russell W. K., Mohácsi-Farkas C., Pillai S. D. (2009). Differential expression of proteins in PubMed DOI

Aguilar C., Mano M., Eulalio A. (2019). MicroRNAs at the host-bacteria interface: host defense or bacterial offense. PubMed DOI

Akira S., Uematsu S., Takeuchi O. (2006). Pathogen recognition and innate immunity. PubMed DOI

Aldridge P. D., Karlinsey J. E., Aldridge C., Birchall C., Thompson D., Yagasaki J., et al. (2006). The flagellar-specific transcription factor, σ28, is the type III secretion chaperone for the flagellar-specific anti- σ28 factor FlgM. PubMed DOI PMC

Allerberger F., Wagner M. (2010). Listeriosis: a resurgent foodborne infection. PubMed DOI

Álvarez-Estrada Á, Gutiérrez-Martín C. B., Rodríguez-Ferri E. F., Martínez-Martínez S. (2018). Transcriptomics of PubMed DOI PMC

Andrews S. C., Robinson A. K., Rodríguez-Quiñones F. (2003). Bacterial iron homeostasis. PubMed DOI

Atkinson G. C., Tenson T., Hauryliuk V. (2011). The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life. PubMed DOI PMC

Ausubel F. F. M. (2005). Are innate immune signaling pathways in plants and animals conserved? PubMed DOI

Baker Y. R., Hodgkinson J. T., Florea B. I., Alza E., Galloway W. R. J. D., Grimm L., et al. (2017). Identification of new quorum sensing autoinducer binding partners in: PubMed DOI PMC

Battesti A., Majdalani N., Gottesman S. (2011). The RpoS-Mediated General Stress Response in PubMed DOI PMC

Bayer M. G., Heinrichs J. H., Cheung A. L. (1996). The molecular architecture of the sar locus in PubMed DOI PMC

Beebe S., Rao I., Mukankusi C., Buruchara R. (2013).

Beisel C. L., Storz G. (2010). Base pairing small RNAs and their roles in global regulatory networks. PubMed DOI PMC

Benbow M. E., Pechal J. L., Tomberlin J. K., Jordan H. R. (2018). “Interkingdom community interactions in disease ecology,” in

Bennett G. M., Moran N. A. (2015). Heritable symbiosis: the advantages and perils of an evolutionary rabbit hole. PubMed DOI PMC

Bermúdez-Barrientos J. R., Ramírez-Sánchez O., Chow F. W.-N., Buck A. H., Abreu-Goodger C. (2020). Disentangling sRNA-Seq data to study RNA communication between species. PubMed DOI PMC

Bhatt S., Egan M., Jenkins V., Muche S., El-Fenej J. (2016). The tip of the iceberg: on the roles of regulatory small RNAs in the virulence of enterohemorrhagic and enteropathogenic PubMed DOI PMC

Bianco C. M., Fröhlich K. S., Vanderpool C. K. (2019). Bacterial cyclopropane fatty acid synthase mRNA is targeted by activating and repressing small RNAs. PubMed DOI PMC

Bidnenko V., Nicolas P., Grylak-Mielnicka A., Delumeau O., Auger S., Aucouturier A., et al. (2017). Termination factor Rho: from the control of pervasive transcription to cell fate determination in PubMed DOI PMC

Bogaert D., De Groot R., Hermans P. W. M. (2004). PubMed DOI

Böhm M.-E., Razavi M., Marathe N. P., Flach C.-F., Larsson D. G. J. (2020). Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities. PubMed DOI PMC

Bohn C., Rigoulay C., Chabelskaya S., Sharma C. M., Marchais A., Skorski P., et al. (2010). Experimental discovery of small RNAs in PubMed DOI PMC

Borgmann J., Schäkermann S., Bandow J. E., Narberhaus F. (2018). A small regulatory RNA controls cell wall biosynthesis and antibiotic resistance. PubMed DOI PMC

Brant E. J., Budak H. (2018). Plant small non-coding RNAs and their roles in biotic stresses. PubMed DOI PMC

Brouwer S., Pustelny C., Ritter C., Klinkert B., Narberhaus F., Häussler S. (2014). The PqsR and RhlR transcriptional regulators determine the level of PubMed DOI PMC

Budnick J. A., Sheehan L. M., Kang L., Michalak P., Caswell C. C. (2018). Characterization of three small proteins in Brucella abortus linked to fucose utilization. PubMed DOI PMC

Burne R. A., Chen Y. Y. M. (2000). PubMed DOI

Burtnick M. N., Downey J. S., Brett P. J., Boylan J. A., Frye J. G., Hoover T. R., et al. (2007). Insights into the complex regulation of rpoS in PubMed DOI PMC

Bush V. (1945).

Butz H. A., Mey A. R., Ciosek A. L., Payne S. M. (2019). PubMed DOI PMC

Caldelari I., Chao Y., Romby P., Vogel J. (2013). RNA-mediated regulation in pathogenic bacteria. PubMed DOI PMC

Carlos A. R., Weis S., Soares M. P. (2018). Cross-talk between iron and glucose metabolism in the establishment of disease tolerance. PubMed DOI PMC

Carrier M.-C., Lalaouna D., Massé E. (2018a). Broadening the definition of bacterial small RNAs: characteristics and mechanisms of action. PubMed DOI

Carrier M. C., Laliberté G., Massé E. (2018b). Identification of new bacterial small RNA targets using MS2 affinity purification coupled to RNA sequencing. PubMed DOI

Carroll R. K., Weiss A., Broach W. H., Wiemels R. E., Mogen A. B., Rice K. C., et al. (2016). Genome-wide annotation, identification, and global transcriptomic analysis of regulatory or small RNA gene expression in PubMed DOI PMC

Casadevall A. (2016). thermal restriction as an antimicrobial function of fever. PubMed DOI PMC

Casadevall A., Pirofski L. (2003). The damage-response framework of microbial pathogenesis. PubMed DOI PMC

Cassat J. E., Skaar E. P. (2013). Iron in infection and immunity. PubMed DOI PMC

Chakravarty S., Massé E. (2019). RNA-dependent regulation of virulence in pathogenic bacteria. PubMed DOI PMC

Chambonnier G., Roux L., Redelberger D., Fadel F., Filloux A., Sivaneson M., et al. (2016). The hybrid histidine kinase LadS forms a multicomponent signal transduction system with the GacS/GacA two-component system in PubMed DOI PMC

Chatterji D., Ojha A. K. (2001). Revisiting the stringent response, ppGpp and starvation signaling. PubMed DOI

Chen R., Wei X., Li Z., Weng Y., Xia Y., Ren W. R., et al. (2019). Identification of a small RNA that directly controls the translation of the quorum sensing signal synthase gene rhlI in PubMed DOI

Chevance F. F. V., Hughes K. T. (2008). Coordinating assembly of a bacterial macromolecular machine. PubMed DOI PMC

Chevance F. F. V., Karlinsey J. E., Wozniak C. E., Hughes K. T. (2006). A little gene with big effects: a serT mutant is defective in flgM gene translation. PubMed DOI PMC

Choi J. S., Kim W., Suk S., Park H., Bak G., Yoon J., et al. (2018). The small RNA, SdsR, acts as a novel type of toxin in PubMed DOI PMC

Cobaxin M., Martínez H., Ayala G., Holmgren J., Sjoling A., Sánchez J. (2014). Cholera toxin expression by El Tor PubMed DOI

Coggan K. A., Wolfgang M. C. (2012). Global regulatory pathways and cross-talk control PubMed DOI PMC

Cohen M. L. (2000). Changing patterns of infectious disease. PubMed DOI

Cornelis P., Wei Q., Andrews S. C., Vinckx T. (2011). Iron homeostasis and management of oxidative stress response in bacteria. PubMed DOI

Cristaldo P. F., Jandák V., Kutalová K., Rodrigues V. B., Brothánek M., Jiøíèek O., et al. (2016). The nature of alarm communication in PubMed DOI PMC

Damo S. M., Kehl-Fie T. E., Sugitani N., Holt M. E., Rathi S., Murphy W. J., et al. (2013). Molecular basis for manganese sequestration by calprotectin and roles in the innate immune response to invading bacterial pathogens. PubMed DOI PMC

Dangl J. L., Jones J. D. G. (2001). Plant pathogens and integrated defence responses to infection. PubMed DOI

Dauros-Singorenko P., Blenkiron C., Phillips A., Swift S. (2018). The functional RNA cargo of bacterial membrane vesicles. PubMed DOI

Davies D. G., Parsek M. R., Pearson J. P., Iglewski B. H., Costerton J. W., Greenberg E. (1998). The involvement of cell-to-cell signals in the development of a bacterial biofilm. PubMed DOI

de Viana J. (1637).

Deng W., Puente J. L., Gruenheid S., Li Y., Vallance B. A., Vázquez A., et al. (2004). Dissecting virulence: systematic and functional analyses of a pathogenicity island. PubMed DOI PMC

Dersch P., Khan M. A., Mühlen S., Görke B. (2017). Roles of regulatory RNAs for antibiotic resistance in bacteria and their potential value as novel drug targets. PubMed DOI PMC

Diard M., Hardt W.-D. (2017). Evolution of bacterial virulence. PubMed DOI

Diaz-Ochoa V. E., Jellbauer S., Klaus S., Raffatellu M. (2014). Transition metal ions at the crossroads of mucosal immunity and microbial pathogenesis. PubMed DOI PMC

Djapgne L., Panja S., Brewer L. K., Gans J. H., Kane M. A., Woodson S. A., et al. (2018). The PubMed DOI PMC

Dong H., Peng X., Liu Y., Wu T., Wang X., De Y., et al. (2018). BASI74, a virulence-related sRNA in PubMed DOI PMC

Dong T., Schellhorn H. E. (2010). Role of RpoS in virulence of pathogens. PubMed DOI PMC

Dorey A., Marinho C., Piveteau P., O’Byrne C. (2019). Role and regulation of the stress activated sigma factor sigma B (σ B) in the saprophytic and host-associated life stages of PubMed DOI

Dorman M. J., Dorman C. J. (2018). Regulatory hierarchies controlling virulence gene expression in PubMed DOI PMC

dos Santos P. T., Menendez-Gil P., Sabharwal D., Christensen J.-H., Brunhede M. Z., Lillebæk E. M. S., et al. (2018). The small regulatory RNAs LhrC1-5 contribute to the response of PubMed DOI PMC

Drecktrah D., Hall L. S., Rescheneder P., Lybecker M., Scott Samuels D. (2018). The stringent response-regulated sRNA transcriptome of PubMed DOI PMC

Drevinek P., Mahenthiralingam E. (2010). PubMed DOI

Dubern J. F., Diggle S. P. (2008). Quorum sensing by 2-alkyl-4-quinolones in PubMed DOI

Dunman P. M., Murphy E., Haney S., Palacios D., Tucker-Kellogg G., Wu S., et al. (2001). Transcription profiling-based identification of PubMed DOI PMC

Epstein P. R. (2001). Climate change and emerging infectious diseases. PubMed DOI

Fàbrega A., Vila J. (2013). PubMed DOI PMC

Fang F. C., Libby S. J., Buchmeier N. A., Loewen P. C., Switala J., Harwood J., et al. (1992). The alternative σ factor KatF (RpoS) regulates PubMed DOI PMC

Faucher S. P., Shuman H. A. (2011). Small regulatory RNA and PubMed DOI PMC

Felden B., Cattoira V. (2018). Bacterial adaptation to antibiotics through regulatory RNAs. PubMed DOI PMC

Fernández M., Corral-Lugo A., Krell T. (2018). The plant compound rosmarinic acid induces a broad quorum sensing response in PubMed DOI

Ferrara S., Brugnoli M., de Bonis A., Righetti F., Delvillani F., Dehò G., et al. (2012). Comparative profiling of PubMed DOI PMC

Fischbach M. A. (2009). Antibiotics from microbes: converging to kill. PubMed DOI PMC

Flahaut S., Frere J., Boutibonnes P., Auffray Y. (1996). Comparison of the bile salts and sodium dodecyl sulfate stress responses in PubMed DOI PMC

Frye J., Karlinsey J. E., Felise H. R., Marzolf B., Dowidar N., McClelland M., et al. (2006). Identification of new flagellar genes of PubMed DOI PMC

Fu Y., Li W., Wu Z., Tao Y., Wang X., Wei J., et al. (2018). Detection of mycobacterial small RNA in the bacterial culture supernatant and plasma of patients with active tuberculosis. PubMed DOI

Furniss R. C. D., Clements A. (2018). Regulation of the locus of enterocyte effacement in attaching and effacing pathogens. PubMed DOI PMC

Gan I.-N., Tan H. S. (2019). A small RNA decreases the sensitivity of PubMed DOI PMC

Gelsinger D. R., DiRuggiero J. (2018). Transcriptional landscape and regulatory roles of small noncoding RNAs in the oxidative stress response of the haloarchaeon PubMed DOI PMC

Gelvin S. B. (2003). Agrobacterium-mediated plant transformation: the biology behind the “gene-jockeying”. PubMed DOI PMC

Gerrick E. R., Barbier T., Chase M. R., Xu R., François J., Lin V. H., et al. (2018). Small RNA profiling in PubMed DOI PMC

Ghaly T. M., Gillings M. R. (2018). Mobile DNAs as ecologically and evolutionarily independent units of life. PubMed DOI

Ghosal A. (2017). Importance of secreted bacterial RNA in bacterial-host interactions in the gut. PubMed DOI

Gilbertson S., Federspiel J. D., Hartenian E., Cristea I. M., Glaunsinger B. (2018). Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription. PubMed DOI PMC

Golding B., Scott D. E., Scharf O., Huang L. Y., Zaitseva M., Lapham C., et al. (2001). Immunity and protection against PubMed DOI

González Plaza J. J. (2018). Small RNAs in cell-to-cell communications during bacterial infection. PubMed DOI

González Plaza J. J., Hulak N., Zhumadilov Z., Akilzhanova A., Plaza J. J. G., Jj G. P., et al. (2016). Fever as an important resource for infectious diseases research. PubMed DOI PMC

Grimson A., Srivastava M., Fahey B., Woodcroft B. J., Chiang H. R., King N., et al. (2008). Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. PubMed PMC

Guo Z., Li Y., Ding S.-W. (2019). Small RNA-based antimicrobial immunity. PubMed DOI

Gutierrez A., Laureti L., Crussard S., Abida H., Rodríguez-Rojas A., Blázquez J., et al. (2013). β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity. PubMed DOI PMC

Hammer B. K., Bassler B. L. (2007). Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic PubMed DOI PMC

Han Y., Chen D., Yan Y., Gao X., Liu Z., Xue Y., et al. (2019). Hfq globally binds and destabilizes sRNAs and mRNAs in PubMed DOI PMC

Hansen A. K., Degnan P. H. (2014). Widespread expression of conserved small RNAs in small symbiont genomes. PubMed DOI PMC

Harkey C. W., Everiss K. D., Peterson K. M. (1994). The PubMed DOI PMC

Harvell C. D., Mitchell C. E., Ward J. R., Altizer S., Dobson A. P., Ostfeld R. S., et al. (2002). Climate warming and disease risks for terrestrial and marine biota. PubMed DOI

Hendaus M. A., Jomha F. A., Alhammadi A. H. (2015). Virus-induced secondary bacterial infection: a concise review. PubMed DOI PMC

Herrera J., Nunn C. L. (2019). Behavioural ecology and infectious disease: implications for conservation of biodiversity. PubMed DOI PMC

Higgs P. G., Lehman N. (2015). The RNA world: molecular cooperation at the origins of life. PubMed DOI

Hille F., Richter H., Wong S. P., Bratoviè M., Ressel S., Charpentier E. (2018). The biology of CRISPR-Cas: backward and forward. PubMed DOI

Hoekzema M., Romilly C., Holmqvist E., Wagner E. G. H. (2019). Hfq-dependent mRNA unfolding promotes sRNA -based inhibition of translation. PubMed DOI PMC

Holmqvist E., Vogel J. (2018). RNA-binding proteins in bacteria. PubMed DOI

Hornung V., Barchet W., Schlee M., Hartmann G. (2008). “RNA Recognition via TLR7 and TLR8,” in PubMed DOI

How M. J., Norman M. D., Finn J., Chung W. S., Marshall N. J. (2017). Dynamic skin patterns in cephalopods. PubMed DOI PMC

Hu Y., Lu P., Zhang Y., Li L., Chen S. (2010). Characterization of an aspartate-dependent acid survival system in PubMed DOI

Hu Y., Zhang L., Wang X., Sun F., Kong X., Dong H., et al. (2018). Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen. PubMed DOI PMC

Hübner A., Yang X., Nolen D. M., Popova T. G., Cabello F. C., Norgard M. V. (2001). Expression of PubMed DOI PMC

Hwang H.-H., Yu M., Lai E.-M. (2017). Agrobacterium -mediated plant transformation: biology and applications. PubMed DOI PMC

Ingle R. A., Carstens M., Denby K. J. (2006). PAMP recognition and the plant-pathogen arms race. PubMed DOI

Irving S. E., Corrigan R. M. (2018). Triggering the stringent response: signals responsible for activating (p)ppGpp synthesis in bacteria. PubMed DOI

Islam W., Noman A., Qasim M., Wang L. (2018). Plant responses to pathogen attack: small rnas in focus. PubMed DOI PMC

Izoré T., Job V., Dessen A. (2011). Biogenesis, regulation, and targeting of the type III secretion system. PubMed DOI

Jang J., Jung K. T., Park J., Yoo C. K., Rhie G. E. (2011). The PubMed DOI

Janssen K. H., Diaz M. R., Gode C. J., Wolfgang M. C., Yahr T. L. (2018a). RsmV, a small noncoding regulatory RNA in PubMed DOI PMC

Janssen K. H., Diaz M. R., Golden M., Graham J. W., Sanders W., Wolfgang M. C., et al. (2018b). Functional analyses of the RsmY and RsmZ small noncoding regulatory RNAs in PubMed DOI PMC

Jemielita M., Wingreen N. S., Bassler B. L. (2018). Quorum sensing controls PubMed DOI PMC

Kalir S., McClure J., Pabbaraju K., Southward C., Ronen M., Leibler S., et al. (2001). Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. PubMed DOI

Kawai T., Akira S. (2009). The roles of TLRs, RLRs and NLRs in pathogen recognition. PubMed DOI PMC

Kay E., Humair B., Dénervaud V., Riedel K., Spahr S., Eberl L., et al. (2006). Two GacA-dependent small RNAs modulate the quorum-sensing response in PubMed DOI PMC

Khasnis A. A., Nettleman M. D. (2005). Global warming and infectious disease. PubMed DOI

Kiekens S., Sass A., Van Nieuwerburgh F., Deforce D., Coenye T. (2018). The Small RNA ncS35 regulates growth in PubMed DOI PMC

Kim S., Reyes D., Beaume M., Francois P., Cheung A. (2014). Contribution of teg49 Small RNA in the 5′ upstream transcriptional region of sarA to virulence in PubMed DOI PMC

Kim V. N., Han J., Siomi M. C. (2009). Biogenesis of small RNAs in animals. PubMed

Kirchman D. L., Meon B., Cottrell M. T., Hutchins D. A., Weeks D., Bruland K. W. (2000). Carbon versus iron limitation of bacterial growth in the California upwelling regime. DOI

Kluger M. J., Kozak W., Conn C. A., Leon L. R., Soszynski D. (1998). Role of fever in disease. PubMed DOI

Krämer A., Akmatov M., Kretzschmar M. (2009). “Principles of infectious disease epidemiology,” in DOI

Kröger C., Rothhardt J. E., Brokatzky D., Felsl A., Kary S. C., Heermann R., et al. (2018). The small RNA RssR regulates myo-inositol degradation by PubMed DOI PMC

Kuijl C., Neefjes J. (2009). New insight into the everlasting host-pathogen arms race. PubMed DOI

Lalaouna D., Baude J., Wu Z., Tomasini A., Chicher J., Marzi S., et al. (2019). RsaC sRNA modulates the oxidative stress response of PubMed DOI PMC

Lalaouna D., Eyraud A., Chabelskaya S., Felden B., Massé E. (2014). Regulatory RNAs involved in bacterial antibiotic resistance. PubMed DOI PMC

Lalaouna D., Simoneau-Roy M., Lafontaine D., Massé E. (2013). Regulatory RNAs and target mRNA decay in prokaryotes. PubMed DOI

Langdon J. H. (2016). “Case Study 1. The darwinian paradigm: an evolving world view,” in DOI

Law C. O. K., Huang C., Pan Q., Lee J., Hao Q., Chan T. F., et al. (2019). A small RNA transforms the multidrug resistance of PubMed DOI PMC

Lee J., Zhang L. (2015). The hierarchy quorum sensing network in PubMed DOI PMC

Lee R. C., Feinbaum R. L., Ambros V. (1993). The PubMed DOI

Legüe M., Calixto A. (2019). RNA language in DOI

Leid J. G., Willson C. J., Shirtliff M. E., Hassett D. J., Parsek M. R., Jeffers A. K. (2005). The exopolysaccharide alginate protects PubMed DOI

Lejars M., Kobayashi A., Hajnsdorf E. (2019). Physiological roles of antisense RNAs in prokaryotes. PubMed DOI

Lenz D. H., Mok K. C., Lilley B. N., Kulkarni R. V., Wingreen N. S., Bassler B. L. (2004). The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in PubMed DOI

Li S., Xu X., Zheng Z., Zheng J., Shakeel M., Jin F. (2019). MicroRNA expression profiling of PubMed DOI

Liao L., Liu C., Zeng Y., Zhao B., Zhang J., Chen B. (2019). Multipartite genomes and the sRNome in response to temperature stress of an Arctic PubMed DOI

Lindsley C. W. (2016). Lost in translation: the death of basic science. PubMed DOI

Liu H., Wang X., Wang H. D., Wu J., Ren J., Meng L., et al. (2012). PubMed DOI PMC

Liu R., Ochman H. (2007). Stepwise formation of the bacterial flagellar system. PubMed DOI PMC

Liu X., Matsumura P. (1994). The FlhD/FlhC complex, a transcriptional activator of the PubMed DOI PMC

Loh E., Righetti F., Eichner H., Twittenhoff C., Narberhaus F. (2018). RNA thermometers in bacterial pathogens. PubMed DOI PMC

Lowy F. D. (1998). Medical progress: PubMed DOI

Lybecker M. C., Abel C. A., Feig A. L., Samuels D. S. (2010). Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete PubMed DOI PMC

Lybecker M. C., Samuels D. S. (2007). Temperature-induced regulation of RpoS by a small RNA in PubMed DOI

Lyu L., Zhang X., Li C., Yang T., Wang J., Pan L., et al. (2019). Small RNA profiles of serum exosomes derived from individuals with latent and active tuberculosis. PubMed DOI PMC

Lyu Y., Wu J., Shi Y. (2019). Metabolic and physiological perturbations of PubMed DOI

Mackowiak P. A. (1981). Direct effects of hyperthermia on pathogenic microorganisms: teleologic implications with regard to fever. PubMed DOI

Mahenthiralingam E., Urban T. A., Goldberg J. B. (2005). The multifarious, multireplicon Burkholderia cepacia complex. PubMed DOI

Mai J., Rao C., Watt J., Sun X., Lin C., Zhang L., et al. (2019). Mycobacterium tuberculosis 6C sRNA binds multiple mRNA targets via C-rich loops independent of RNA chaperones. PubMed DOI PMC

Malgaonkar A., Nair M. (2019). Quorum sensing in PubMed DOI PMC

Mallia P., Johnston S. L. (2007). Influenza infection and COPD. PubMed DOI PMC

Manna A. C., Kim S., Cengher L., Corvaglia A., Leo S., Francois P., et al. (2018). Small RNA teg49 is derived from a sarA transcript and regulates virulence genes independent of SarA in PubMed DOI PMC

Marden J. N., Diaz M. R., Walton W. G., Gode C. J., Betts L., Urbanowski M. L., et al. (2013). An unusual CsrA family member operates in series with RsmA to amplify posttranscriptional responses in PubMed DOI PMC

Marinho C. M., Dos Santos P. T., Kallipolitis B. H., Johansson J., Ignatov D., Guerreiro D. N., et al. (2019). The σB-dependent regulatory sRNA Rli47 represses isoleucine biosynthesis in PubMed DOI PMC

Massé E., Gottesman S. (2002). A small RNA regulates the expression of genes involved in iron metabolism in PubMed DOI PMC

Massé E., Majdalani N., Gottesman S. (2003). Regulatory roles for small RNAs in bacteria. PubMed DOI

McPhearson R. M., DePaola A., Zywno S. R., Motes M. L., Guarino A. M. (1991). Antibiotic resistance in Gram-negative bacteria from cultured catfish and aquaculture ponds. DOI

Melson E. M., Kendall M. M. (2019). The sRNA DicF integrates oxygen sensing to enhance enterohemorrhagic PubMed DOI PMC

Mey A. R., Butz H. A., Payne S. M. (2015). PubMed DOI PMC

Milillo M. A., Trotta A., Serafino A., Marin Franco J. L., Marinho F. V., Alcain J., et al. (2019). Bacterial RNA contributes to the down-modulation of MHC-II expression on monocytes/macrophages diminishing CD4+ T cell responses. PubMed DOI PMC

Miller C. L., Romero M., Karna S. L. R., Chen T., Heeb S., Leung K. P. (2016). RsmW, PubMed DOI PMC

Moresco E. M. Y., LaVine D., Beutler B. (2011). Toll-like receptors. PubMed DOI

Mustachio L. M., Aksit S., Mistry R. H., Scheffler R., Yamada A., Liu J. M. (2012). The PubMed DOI PMC

Nadal Jimenez P., Koch G., Thompson J. A., Xavier K. B., Cool R. H., Quax W. J. (2012). The multiple signaling systems regulating virulence in PubMed DOI PMC

Nakatsu Y., Matsui H., Yamamoto M., Noutoshi Y., Toyoda K., Ichinose Y. (2019). Quorum-dependent expression of rsmX and rsmY, small non-coding RNAs, in PubMed DOI

Napoli C., Lemieux C., Jorgensen R. (1990). Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. PubMed DOI PMC

Narberhaus F. (2010). Translational control of bacterial heat shock and virulence genes by temperature-sensing mRNAs. PubMed DOI

Narberhaus F., Waldminghaus T., Chowdhury S. (2006). RNA thermometers. PubMed DOI

Ng D., Harn T., Altindal T., Kolappan S., Marles J. M., Lala R., et al. (2016). The PubMed DOI PMC

Oh C. S., Beer S. V. (2005). Molecular genetics of PubMed DOI

Okamura K., Lai E. C. (2008). Endogenous small interfering RNAs in animals. PubMed DOI PMC

Olejniczak M., Storz G. (2017). ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers? PubMed DOI PMC

O’Neill J. (2014). The review on antimicrobial resistance tackling drug-resistant infections globally: final report and recommendations.

Ong S. T., Shan, Ho J. Z., Ho B., Ding J. L. (2006). Iron-withholding strategy in innate immunity. PubMed DOI

Ostberg J. R., Taylor S. L., Baumann H., Repasky E. A. (2000). Regulatory effects of fever-range whole-body hyperthermia on the LPS-induced acute inflammatory response. PubMed DOI

Pallen M. J., Beatson S. A., Bailey C. M. (2005). Bioinformatics analysis of the locus for enterocyte effacement provides novel insights into type-III secretion. PubMed DOI PMC

Papenfort K., Vogel J. (2010). Regulatory RNA in bacterial pathogens. PubMed DOI

Pena R. T., Blasco L., Ambroa A., González-Pedrajo B., Fernández-García L., López M., et al. (2019). Relationship between quorum sensing and secretion systems. PubMed DOI PMC

Pita T., Feliciano J. R., Leitão J. H. (2018). Small noncoding regulatory RNAs from PubMed DOI PMC

Poole K. (2012). Bacterial stress responses as determinants of antimicrobial resistance. PubMed DOI

Popitsch N., Bilusic I., Rescheneder P., Schroeder R., Lybecker M. (2017). Temperature-dependent sRNA transcriptome of the Lyme disease spirochete. PubMed DOI PMC

Pounds J. A., Bustamante M. R., Coloma L. A., Consuegra J. A., Fogden M. P. L., Foster P. N., et al. (2006). Widespread amphibian extinctions from epidemic disease driven by global warming. PubMed DOI

Puzari M., Sharma M., Chetia P. (2018). Emergence of antibiotic resistant PubMed DOI

Radolf J. D., Caimano M. J., Stevenson B., Hu L. T. (2012). Of ticks, mice and men: Understanding the dual-host lifestyle of Lyme disease spirochaetes. PubMed DOI PMC

Ramamoorthi N., Narasimhan S., Pal U., Bao F., Yang X. F., Fish D., et al. (2005). The Lyme disease agent exploits a tick protein to infect the mammalian host. PubMed DOI PMC

Ratner H. K., Escalera-Maurer A., Le Rhun A., Jaggavarapu S., Wozniak J. E., Crispell E. K., et al. (2019). Catalytically Active Cas9 mediates transcriptional interference to facilitate bacterial virulence. PubMed DOI PMC

Records A. R., Gross D. C. (2010). Sensor kinases RetS and LadS regulate PubMed DOI PMC

Rochat T., Bohn C., Morvan C., Le Lam T. N., Razvi F., Pain A., et al. (2018). The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in PubMed DOI PMC

Rodó X., Pascual M., Fuchs G., Faruque A. S. G. (2002). ENSO and cholera: a nonstationary link related to climate change? PubMed DOI PMC

Rohmer L., Hocquet D., Miller S. I. (2011). Are pathogenic bacteria just looking for food? metabolism and microbial pathogenesis. PubMed DOI PMC

Romeo T., Babitzke P. (2018). Global regulation by CsrA and Its RNA antagonists. PubMed DOI PMC

Romero D., Traxler M. F., López D., Kolter R. (2011). Antibiotics as signal molecules. PubMed DOI PMC

Romero M., Silistre H., Lovelock L., Wright V. J., Chan K.-G., Hong K.-W., et al. (2018). Genome-wide mapping of the RNA targets of the PubMed DOI PMC

Ross J. A., Thorsing M., Lillebæk E. M. S., Teixeira Dos Santos P., Kallipolitis B. H. (2019). The LhrC sRNAs control expression of T cell-stimulating antigen TcsA in PubMed DOI PMC

Roy B., Ahamed S. T., Bandyopadhay B., Giri N. (2020). Development of quinolone resistance and prevalence of different virulence genes among PubMed DOI

Ruano-Gallego D., Álvarez B., Fernández L. Á. (2015). Engineering the controlled assembly of filamentous injectisomes in PubMed DOI PMC

Rübsam H., Kirsch F., Reimann V., Erban A., Kopka J., Hagemann M., et al. (2018). The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium PubMed DOI

Sahni A., Hajjari M., Raheb J., Foroughmand A. M., Asgari M. (2019). The non-coding RNA rprA can increase the resistance to ampicillin in PubMed DOI

Saliba A. E., Santos C., Vogel J. (2017). New RNA-seq approaches for the study of bacterial pathogens. PubMed DOI

Sanderson S., Campbell D. J., Shastri N. (1995). Identification of a CD4+ T cell-stimulating antigen of pathogenic bacteria by expression cloning. PubMed DOI PMC

Santiago-Frangos A., Fröhlich K. S., Jeliazkov J. R., Małecka E. M., Marino G., Gray J. J., et al. (2019). Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation. PubMed DOI PMC

Sassi M., Augagneur Y., Mauro T., Ivain L., Chabelskaya S., Hallier M., et al. (2015). SRD: A PubMed DOI PMC

Sauder A. B., Kendall M. M. (2018). After the fact(or): posttranscriptional gene regulation in enterohemorrhagic PubMed DOI PMC

Schachterle J. K., Zeng Q., Sundin G. W. (2019). Three Hfq-dependent small RNAs regulate flagellar motility in the fire blight pathogen Erwinia PubMed DOI

Schuster M., Hawkins A. C., Harwood C. S., Greenberg E. P. (2004). The PubMed DOI

Segovia C., Arias-Carrasco R., Yañez A. J., Maracaja-Coutinho V., Santander J. (2018). Core non-coding RNAs of PubMed DOI PMC

Sellge G., Kufer T. A. (2015). PRR-signaling pathways: learning from microbial tactics. PubMed DOI

Sheehan L. M., Caswell C. C. (2018). An account of evolutionary specialization: the AbcR small RNAs in the rhizobiales. PubMed DOI PMC

Shimizu K. (2013). Regulation systems of bacteria such as PubMed DOI PMC

Shin G. Y., Schachterle J. K., Shyntum D. Y., Moleleki L. N., Coutinho T. A., Sundin G. W. (2019). Functional characterization of a global virulence regulator Hfq and identification of Hfq-dependent sRNAs in the plant pathogen PubMed DOI PMC

Shyp V., Tankov S., Ermakov A., Kudrin P., English B. P., Ehrenberg M., et al. (2012). Positive allosteric feedback regulation of the stringent response enzyme RelA by its product. PubMed DOI PMC

Silva I. J., Barahona S., Eyraud A., Lalaouna D., Figueroa-Bossi N., Massé E., et al. (2019). SraL sRNA interaction regulates the terminator by preventing premature transcription termination of rho mRNA. PubMed DOI PMC

Sinha D., Matz L. M., Cameron T. A., de Lay N. R. (2018). Poly(A) polymerase is required for RyhB sRNA stability and function in PubMed DOI PMC

Slingenbergh J., Gilbert M., De Balogh K., Wint W. (2004). Ecological sources of zoonotic diseases. PubMed DOI

Smirnov A., Förstner K. U., Holmqvist E., Otto A., Günster R., Becher D., et al. (2016). Grad-seq guides the discovery of ProQ as a major small RNA-binding protein. PubMed DOI PMC

Sonnleitner E., Gonzalez N., Sorger-Domenigg T., Heeb S., Richter A. S., Backofen R., et al. (2011). The small RNA PhrS stimulates synthesis of the PubMed DOI

Sparling P. F. (1983). Bacterial virulence and pathogenesis: an overview. PubMed

Steere A. C., Strle F., Wormser G. P., Hu L. T., Branda J. A., Hovius J. W. R., et al. (2016). Lyme borreliosis. PubMed DOI PMC

Streinzer M., Paulus H. F., Spaethe J. (2009). Floral colour signal increases short-range detectability of a sexually deceptive orchid to its bee pollinator. PubMed DOI

Sudo N., Soma A., Iyoda S., Oshima T., Ohto Y., Saito K., et al. (2018). Small RNA Esr41 inversely regulates expression of LEE and flagellar genes in enterohaemorrhagic PubMed DOI

Sudo N., Soma A., Muto A., Iyoda S., Suh M., Kurihara N., et al. (2014). A novel small regulatory RNA enhances cell motility in enterohemorrhagic PubMed DOI

Suh S. J., Silo-Suh L., Woods D. E., Hassett D. J., West S. E. H., Ohman D. E. (1999). Effect of rpoS mutation on the stress response and expression of virulence factors in PubMed DOI PMC

Sundberg L. R., Ketola T., Laanto E., Kinnula H., Bamford J. K. H., Penttinen R., et al. (2016). Intensive aquaculture selects for increased virulence and interference competition in bacteria. PubMed DOI PMC

Swaminathan B., Gerner-Smidt P. (2007). The epidemiology of human listeriosis. PubMed DOI

Tanji T., Ip Y. T. (2005). Regulators of the toll and Imd pathways in the drosophila innate immune response. PubMed DOI

Taylor A. F. (2016). Small molecular replicators go organic. PubMed DOI

Thairu M. W., Cheng S., Hansen A. K. (2018). A sRNA in a reduced PubMed DOI

Thairu M. W., Hansen A. K. (2019). Changes in aphid host plant diet influence the small-RNA expression profiles of its obligate nutritional symbiont, PubMed DOI PMC

Thi Bach Nguyen H., Romero A. D., Amman F., Sorger-Domenigg T., Tata M. (2018). Negative control of RpoS synthesis by the sRNA ReaL in PubMed DOI PMC

Thomason M. K., Voichek M., Dar D., Addis V., Fitzgerald D., Gottesman S., et al. (2019). A rhlI 5′ UTR-Derived sRNA regulates RhlR-dependent quorum sensing in PubMed DOI PMC

Tomasini A., François P., Howden B. P., Fechter P., Romby P., Caldelari I. (2014). The importance of regulatory RNAs in PubMed DOI

Toyofuku M., Nomura N., Eberl L. (2019). Types and origins of bacterial membrane vesicles. PubMed DOI

Trewavas A. J. (2001). The population/biodiversity paradox. Agricultural efficiency to save wilderness. PubMed DOI PMC

Trullàs R. (2019).

Valentini M., Gonzalez D., Mavridou D. A., Filloux A. (2018). Lifestyle transitions and adaptive pathogenesis of PubMed DOI

van der Krol A. R., Mur L. A., Beld M., Mol J. N., Stuitje A. R. (1990). Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. PubMed DOI PMC

Van Elsas J. D., Semenov A. V., Costa R., Trevors J. T. (2011). Survival of PubMed DOI PMC

Wassenaar T. M., Gaastra W. (2001). Bacterial virulence: can we draw the line? PubMed DOI

Waters L. S., Storz G. (2009). Regulatory RNAs in bacteria. PubMed DOI PMC

Wei B. L., Brun-Zinkernagel A. M., Simecka J. W., Prüß B. M., Babitzke P., Romeo T. (2001). Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of PubMed DOI

Weiberg A., Wang M., Lin F. M., Zhao H., Zhang Z., Kaloshian I., et al. (2013). Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways. PubMed DOI PMC

Wernegreen J. J. (2002). Genome evolution in bacterial endosymbionts of insects. PubMed DOI

Werren J. H., Baldo L., Clark M. E. (2008). Wolbachia: master manipulators of invertebrate biology. PubMed DOI

Westermann A. J., Barquist L., Vogel J. (2017). Resolving host-pathogen interactions by dual RNA-seq. PubMed DOI PMC

Westermann A. J., Förstner K. U., Amman F., Barquist L., Chao Y., Schulte L. N., et al. (2016). Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. PubMed DOI

Westermann A. J., Gorski S. A., Vogel J. (2012). Dual RNA-seq of pathogen and host. PubMed DOI

Westermann A. J., Venturini E., Sellin M. E., Förstner K. U., Hardt W. D., Vogel J. (2019). The major RNA-binding protein ProQ impacts virulence gene expression in PubMed DOI PMC

Wightman B., Ha I., Ruvkun G. (1993). Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in PubMed DOI

Wilderman P. J., Sowa N. A., FitzGerald D. J., FitzGerald P. C., Gottesman S., Ochsner U. A., et al. (2004). Identification of tandem duplicate regulatory small RNAs in PubMed DOI PMC

Wilms I., Voss B., Hess W. R., Leichert L. I., Narberhaus F. (2011). Small RNA-mediated control of the PubMed DOI

Witzany G. (2010). Biocommunication and natural genome editing. PubMed DOI PMC

Woolfit M., Algama M., Keith J. M., McGraw E. A., Popovici J. (2015). Discovery of putative small non-coding RNAs from the obligate intracellular bacterium PubMed DOI PMC

Xi D., Li Y., Yan J., Li Y., Wang X., Cao B. (2020). Small RNA PubMed DOI

Yakhnin A. V., Baker C. S., Vakulskas C. A., Yakhnin H., Berezin I., Romeo T., et al. (2013). CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage. PubMed DOI PMC

Yuan X., Zeng Q., Khokhani D., Tian F., Severin G. B., Waters C. M., et al. (2019). A feed-forward signalling circuit controls bacterial virulence through linking cyclic di-GMP and two mechanistically distinct sRNAs, ArcZ and RsmB. PubMed DOI PMC

Zapf R. L., Wiemels R. E., Keogh R. A., Holzschu D. L., Howell K. M., Trzeciak E., et al. (2019). The small RNA Teg41 regulates expression of the alpha phenol-soluble modulins and is required for virulence in PubMed DOI PMC

Zeng G., Yang J., Zhu G. (2019). Cross-kingdom small RNAs among animals, plants and microbes. PubMed DOI PMC

Zeng Q., Sundin G. W. (2014). Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen PubMed DOI PMC

Zhang M. G., Liu J. M. (2019). Transcription of cis antisense small RNA MtlS in PubMed DOI PMC

Zhang Y. J., Rubin E. J. (2013). Feast or famine: the host-pathogen battle over amino acids. PubMed DOI PMC

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