Variant c.2158-2A>G in MANBA is an important and frequent cause of hereditary hearing loss and beta-mannosidosis among the Czech and Slovak Roma population- evidence for a new ethnic-specific variant
Language English Country Great Britain, England Media electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
32847582
PubMed Central
PMC7448337
DOI
10.1186/s13023-020-01508-3
PII: 10.1186/s13023-020-01508-3
Knihovny.cz E-resources
- Keywords
- Beta-mannosidosis, Ethnic-specific variant, Hearing loss, Mental retardation, Roma,
- MeSH
- beta-Mannosidosis * MeSH
- Ethnicity MeSH
- Deafness * genetics MeSH
- Humans MeSH
- Minority Groups MeSH
- Hearing Loss * genetics MeSH
- Roma * genetics MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Czech Republic MeSH
- Slovakia epidemiology MeSH
BACKGROUND: The Roma are a European ethnic minority threatened by several recessive diseases. Variants in MANBA cause a rare lysosomal storage disorder named beta-mannosidosis whose clinical manifestation includes deafness and mental retardation. Since 1986, only 23 patients with beta-mannosidosis and biallelic MANBA variants have been described worldwide. RESULTS: We now report on further 10 beta-mannosidosis patients of Roma origin from eight families in the Czech and Slovak Republics with hearing loss, mental retardation and homozygous pathogenic variants in MANBA. MANBA variant c.2158-2A>G screening among 345 anonymized normal hearing controls from Roma populations revealed a carrier/heterozygote frequency of 3.77%. This is about 925 times higher than the frequency of this variant in the gnomAD public database and classifies the c.2158-2A>G variant as a prevalent, ethnic-specific variant causing hearing loss and mental retardation in a homozygous state. The frequency of heterozygotes/carriers is similar to another pathogenic variant c.71G>A (p.W24*) in GJB2, regarded as the most frequent variant causing deafness in Roma populations. CONLCUSION: Beta-mannosidosis, due to a homozygous c.2158-2A>G MANBA variant, is an important and previously unknown cause of hearing loss and mental retardation among Central European Roma.
See more in PubMed
Wenger DA, Sujansky E, Fennessey PV, Thompson JN. Human beta-mannosidase deficiency. N Engl J Med. 1986;315(19):1201–1205. doi: 10.1056/NEJM198611063151906. PubMed DOI
Cooper A, Sardharwalla IB, Roberts MM. Human beta-mannosidase deficiency. N Engl J Med. 1986;315(19):1231. PubMed
Cooper A, Wraith JE, Savage WJ, Thornley M, Noronha MJ. Beta-mannosidase deficiency in a female infant with epileptic encephalopathy. J Inherit Metab Dis. 1991;14(1):18–22. doi: 10.1007/BF01804383. PubMed DOI
Dorland L, Duran M, Hoefnagels FE, Breg JN, Fabery de Jonge H, Cransberg K, et al. Beta-mannosidosis in two brothers with hearing loss. J Inherit Metab Dis. 1988;11(Suppl 2):255–258. PubMed
Kleijer WJ, Hu P, Thoomes R, Boer M, Huijmans JG, Blom W, et al. Beta-mannosidase deficiency: heterogeneous manifestation in the first female patient and her brother. J Inherit Metab Dis. 1990;13(6):867–872. doi: 10.1007/BF01800211. PubMed DOI
Poenaru L, Akli S, Rocchiccioli F, Eydoux P, Zamet P. Human beta-mannosidosis: a 3-year-old boy with speech impairment and emotional instability. Clin Genet. 1992;41(6):331–334. doi: 10.1111/j.1399-0004.1992.tb03408.x. PubMed DOI
Wijburg H, de Jong J, Wevers R, Bakkeren J, Trijbels F, Sengers R. Beta-mannosidosis and ethanolaminuria in a female patient. Eur J Pediatr. 1992;151(4):311. doi: 10.1007/BF02072238. PubMed DOI
Levade T, Graber D, Flurin V, Delisle MB, Pieraggi MT, Testut MF, et al. Human beta-mannosidase deficiency associated with peripheral neuropathy. Ann Neurol. 1994;35(1):116–119. doi: 10.1002/ana.410350119. PubMed DOI
Rodriguez-Serna M, Botella-Estrada R, Chabas A, Coll MJ, Oliver V, Febrer MI, et al. Angiokeratoma corporis diffusum associated with beta-mannosidase deficiency. Arch Dermatol. 1996;132(10):1219–1222. doi: 10.1001/archderm.1996.03890340083013. PubMed DOI
Gourrier E, Thomas MP, Munnich A, Poenaru L, Asensi D, Jan D, et al. Beta mannosidosis: a new case. Arch Pediatr. 1997;4(2):147–151. doi: 10.1016/S0929-693X(97)86159-3. PubMed DOI
Bedilu R, Nummy KA, Cooper A, Wevers R, Smeitink J, Kleijer WJ, et al. Variable clinical presentation of lysosomal beta-mannosidosis in patients with null mutations. Mol Genet Metab. 2002;77(4):282–290. doi: 10.1016/S1096-7192(02)00172-5. PubMed DOI
Broomfield A, Gunny R, Ali I, Vellodi A, Prabhakar P. A clinically severe variant of beta-Mannosidosis, presenting with neonatal onset epilepsy with subsequent evolution of hydrocephalus. JIMD Rep. 2013;11:93–97. doi: 10.1007/8904_2013_227. PubMed DOI PMC
Gort L, Duque J, Fabeiro JM, Zulaica A, Coll MJ, Chabas A. Molecular analysis in two beta-mannosidosis patients: description of a new adult case. Mol Genet Metab. 2006;89(4):398–400. doi: 10.1016/j.ymgme.2006.07.001. PubMed DOI
Molho-Pessach V, Bargal R, Abramowitz Y, Doviner V, Ingber A, Raas-Rothschild A, et al. Angiokeratoma corporis diffusum in human beta-mannosidosis: report of a new case and a novel mutation. J Am Acad Dermatol. 2007;57(3):407–412. doi: 10.1016/j.jaad.2007.01.037. PubMed DOI
Riise Stensland HM, Persichetti E, Sorriso C, Hansen GM, Bibi L, Paciotti S, et al. Identification of two novel beta-mannosidosis-associated sequence variants: biochemical analysis of beta-mannosidase (MANBA) missense mutations. Mol Genet Metab. 2008;94(4):476–480. doi: 10.1016/j.ymgme.2008.04.010. PubMed DOI
Labauge P, Renard D, Castelnovo G, Sabourdy F, de Champfleur N, Levade T. Beta-mannosidosis: a new cause of spinocerebellar ataxia. Clin Neurol Neurosurg. 2009;111(1):109–110. doi: 10.1016/j.clineuro.2008.09.007. PubMed DOI
Uchino Y, Fukushige T, Yotsumoto S, Hashiguchi T, Taguchi H, Suzuki N, et al. Morphological and biochemical studies of human beta-mannosidosis: identification of a novel beta-mannosidase gene mutation. Br J Dermatol. 2003;149(1):23–29. doi: 10.1046/j.1365-2133.2003.05365.x. PubMed DOI
Sedel F, Friderici K, Nummy K, Caillaud C, Chabli A, Durr A, et al. Atypical Gilles de la Tourette syndrome with beta-mannosidase deficiency. Arch Neurol. 2006;63(1):129–131. doi: 10.1001/archneur.63.1.129. PubMed DOI
Alkhayat AH, Kraemer SA, Leipprandt JR, Macek M, Kleijer WJ, Friderici KH. Human beta-mannosidase cDNA characterization and first identification of a mutation associated with human beta-mannosidosis. Hum Mol Genet. 1998;7(1):75–83. doi: 10.1093/hmg/7.1.75. PubMed DOI
Blomqvist M, Smeland MF, Lindgren J, Sikora P, Riise Stensland HMF, Asin-Cayuela J. Beta-Mannosidosis caused by a novel homozygous intragenic inverted duplication in MANBA. Cold Spring Harb Mol Case Stud. 2019;5(3). PubMed PMC
Cooper A, Hatton C, Thornley M, Sardharwalla IB. Human beta-mannosidase deficiency: biochemical findings in plasma, fibroblasts, white cells and urine. J Inherit Metab Dis. 1988;11(1):17–29. doi: 10.1007/BF01800054. PubMed DOI
van Pelt J, Hokke CH, Dorland L, Duran M, Kamerling JP, Vliegenthart JF. Accumulation of mannosyl-beta (1----4)-N-acetylglucosamine in fibroblasts and leukocytes of patients with a deficiency of beta-mannosidase. Clin Chim Acta. 1990;187(1):55–60. doi: 10.1016/0009-8981(90)90261-P. PubMed DOI
Schrauwen I, Melegh BI, Chakchouk I, Acharya A, Nasir A, Poston A, et al. Hearing impairment locus heterogeneity and identification of PLS1 as a new autosomal dominant gene in Hungarian Roma. Eur J Hum Genet. 2019;27(6):869–878. doi: 10.1038/s41431-019-0372-y. PubMed DOI PMC
Safka Brozkova D, Haberlova J, Mazanec R, Lastuvkova J, Seeman P. HSMNR belongs to the most frequent types of hereditary neuropathy in the Czech Republic and is twice more frequent than HMSNL. Clin Genet. 2016;90(2):161–165. doi: 10.1111/cge.12745. PubMed DOI
Safka Brozkova D, Paulasova Schwabova J, Neupauerova J, Sabova J, Krutova M, Perina V, et al. HMSN Lom in 12 Czech patients, with one unusual case due to uniparental isodisomy of chromosome 8. J Hum Genet. 2017;62(3):431–435. doi: 10.1038/jhg.2016.148. PubMed DOI
Schwabova J, Brozkova DS, Petrak B, Mojzisova M, Pavlickova K, Haberlova J, et al. Homozygous EXOSC3 mutation c.92G-->C, p.G31A is a founder mutation causing severe pontocerebellar hypoplasia type 1 among the Czech Roma. J Neurogenet. 2013;27(4):163–169. doi: 10.3109/01677063.2013.814651. PubMed DOI
Lassuthova P, Siskova D, Haberlova J, Sakmaryova I, Filous A, Seeman P. Congenital cataract, facial dysmorphism and demyelinating neuropathy (CCFDN) in 10 Czech gypsy children--frequent and underestimated cause of disability among Czech gypsies. Orphanet J Rare Dis. 2014;9:46. doi: 10.1186/1750-1172-9-46. PubMed DOI PMC
Fraser A. The gypsies. 1992.
Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, et al. Origins and divergence of the Roma (gypsies) Am J Hum Genet. 2001;69(6):1314–1331. doi: 10.1086/324681. PubMed DOI PMC
Kalaydjieva L, Gresham D, Calafell F. Genetic studies of the Roma (gypsies): a review. BMC Med Genet. 2001;2:5. doi: 10.1186/1471-2350-2-5. PubMed DOI PMC
Bouwer S, Angelicheva D, Chandler D, Seeman P, Tournev I, Kalaydjieva L. Carrier rates of the ancestral Indian W24X mutation in GJB2 in the general gypsy population and individual subisolates. Genet Test. 2007;11(4):455–458. doi: 10.1089/gte.2007.0048. PubMed DOI
Safka Brozkova D, Lastuvkova J, Stepankova H, Krutova M, Trkova M, Myska P, et al. DFNB49 is an important cause of non-syndromic deafness in Czech Roma patients but not in the general Czech population. Clin Genet. 2012;82(6):579–582. doi: 10.1111/j.1399-0004.2011.01817.x. PubMed DOI
Masindova I, Soltysova A, Varga L, Matyas P, Ficek A, Huckova M, et al. MARVELD2 (DFNB49) mutations in the hearing impaired central European Roma population--prevalence, clinical impact and the common origin. PLoS One. 2015;10(4):e0124232. doi: 10.1371/journal.pone.0124232. PubMed DOI PMC
Minarik G, Ferak V, Ferakova E, Ficek A, Polakova H, Kadasi L. High frequency of GJB2 mutation W24X among Slovak Romany (gypsy) patients with non-syndromic hearing loss (NSHL) Gen Physiol Biophys. 2003;22(4):549–556. PubMed
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20(9):1297–1303. doi: 10.1101/gr.107524.110. PubMed DOI PMC
Landrum MJ, Lee JM, Benson M, Brown GR, Chao C, Chitipiralla S, et al. ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res. 2018;46(D1):D1062–D10D7. doi: 10.1093/nar/gkx1153. PubMed DOI PMC
Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN. The human gene mutation database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine. Hum Genet 2014;133(1):1–9. PubMed PMC
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405–424. doi: 10.1038/gim.2015.30. PubMed DOI PMC
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 2020;581(7809):434–443. doi: 10.1038/s41586-020-2308-7. PubMed DOI PMC
Poupetova H, Ledvinova J, Berna L, Dvorakova L, Kozich V, Elleder M. The birth prevalence of lysosomal storage disorders in the Czech Republic: comparison with data in different populations. J Inherit Metab Dis. 2010;33(4):387–396. doi: 10.1007/s10545-010-9093-7. PubMed DOI PMC
Van Camp G, Smith RJH. Hereditary Hearing Loss Homepage. Available from: http://hereditaryhearingloss.org. [cited 2020 08].