Delimitation, new species and teleomorph-anamorph relationships in Codinaea, Dendrophoma, Paragaeumannomyces and Striatosphaeria (Chaetosphaeriaceae)
Status PubMed-not-MEDLINE Language English Country Bulgaria Media electronic-ecollection
Document type Journal Article
PubMed
33149721
PubMed Central
PMC7588497
DOI
10.3897/mycokeys.74.57824
PII: 57824
Knihovny.cz E-resources
- Keywords
- 15 new taxa, molecular phylogeny, phialidic conidiogenesis, scolecosporous, systematics, wood-inhabiting fungi,
- Publication type
- Journal Article MeSH
The Chaetosphaeriaceae are a diverse group of pigmented, predominantly phialidic hyphomycetes comprised of several holomorphic genera including Chaetosphaeria, the most prominent genus of the family. Although the morphology of the teleomorphs of the majority of Chaetosphaeria is rather uniform, their associated anamorphs primarily exhibit the variability and evolutionary change observed in the genus. An exception from the morphological monotony among Chaetosphaeria species is a group characterised by scolecosporous, hyaline to light pink, multiseptate, asymmetrical ascospores and a unique three-layered ascomatal wall. Paragaeumannomyces sphaerocellularis, the type species of the genus, exhibits these morphological traits and is compared with similar Chaetosphaeria with craspedodidymum- and chloridium-like synanamorphs. Morphological comparison and phylogenetic analyses of the combined ITS-28S sequences of 35 isolates and vouchers with these characteristics revealed a strongly-supported, morphologically well-delimited clade in the Chaetosphaeriaceae containing 16 species. The generic name Paragaeumannomyces is applied to this monophyletic clade; eight new combinations and five new species, i.e. P. abietinus sp. nov., P. elegans sp. nov., P. granulatus sp. nov., P. sabinianus sp. nov. and P. smokiensis sp. nov., are proposed. A key to Paragaeumannomyces is provided. Using morphology, cultivation studies and phylogenetic analyses of ITS and 28S rDNA, two additional new species from freshwater and terrestrial habitats, Codinaea paniculata sp. nov. and Striatosphaeria castanea sp. nov., are described in the family. A codinaea-like anamorph of S. castanea forms conidia with setulae at each end in axenic culture; this feature expands the known morphology of Striatosphaeria. A chaetosphaeria-like teleomorph is experimentally linked to Dendrophoma cytisporoides, a sporodochial hyphomycete and type species of Dendrophoma, for the first time.
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Arambarri AM, Cabello MN. (1989) A numerical taxonomic study of some phialidic genera of hyphomycetes: cluster analysis. Mycotaxon 34: 679–696.
Atkinson TJ, Miller AN, Huhndorf SM, Orlovich DA. (2007) Unusual new Chaetosphaeria species from New Zealand: intrafamilial diversity and elucidations of the Chaetosphaeriaceae–Lasiosphaeriaceae relationship (Sordariomycetes, Ascomycotina). New Zealand Journal of Botany 45: 685–706. 10.1080/00288250709509744 DOI
Barr ME. (1993) Redisposition of some taxa described by J.B. Ellis. Mycotaxon 46: 45–76.
Booth C. (1957) Studies of Pyrenomycetes I. Four Species of Chaetosphaeria, two with Catenularia conidia. II. Melanopsamma pomiformis and its Stachybotrys conidia. Mycological Papers 68: 1–27.
Booth C. (1958) The genera Chaetosphaeria and Thaxteria in Britain. Naturalist 1958: 83–90.
Berkeley M J, Broome CE. (1871) Notices of British Fungi Annals and Magazine of Natural History, Ser. 4, 7: 425–436. 10.1080/00222937108696408 DOI
Carroll GC, Munk A. (1964) Studies on lignicolous Sordariaceae. Mycologia 56: 77–98. 10.1080/00275514.1964.12018085 DOI
Castresana J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540–552. 10.1093/oxfordjournals.molbev.a026334 PubMed DOI
Crous PW, Schumacher RK, Wingfield MJ, Akulov AY, Denman S, Roux J, Braun U, Burgess TI, Carnegie AJ, Váczy KZ, Guatimosim E, Schwartsburd PB, Barreto RW, Hernández-Restrepo M, Lombard L, Groenewald JZ. (2018a) New and interesting fungi. 1. Fungal Systematics and Evolution 1: 169–215. 10.3114/fuse.2018.01.08 PubMed DOI PMC
Crous PW, Schumacher RK, Wingfield MJ, Lombard L, Giraldo A, Christensen M, Gardiennet A, Nakashima C, Pereira OL, Smith AJ, Groenewald JZ. (2015a) Fungal systematics and evolution: FUSE 1. Sydowia 67: 81–118.
Crous PW, Shivas RG, Quaedvlieg W, van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza JT, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Pérez Sierra AM, Robertson JL, Roux J, Rubio E, Schumacher RK, Stchigel AM, Sutton DA, Tan YP, Thompson EH, van der Linde E, Walker AK, Walker DM, Wickes BL, Wong PTW, Groenewald JZ. (2014a) Fungal Planet description sheets: 214–280. Persoonia 32: 184–306. 10.3767/003158514X682395 PubMed DOI PMC
Crous PW, Verkley GJM, Christensen M, Castañeda-Ruiz RF, Groenewald JZ. (2012) How important are conidial appendages? Persoonia 28: 126–137. 10.3767/003158512X652624 PubMed DOI PMC
Crous PW, Verkleij GJM, Groenewald JZ, Houbraken J. (2019) Fungal biodiversity. CBS laboratory manual series 1. CBS-KNAW Fungal Biodiversity Centre, Utrecht, 1–425.
Crous PW, Wingfield MJ, Burgess TI, Carnegie AJ, Hardy GEStJ, Smith D, Summerell BA, Cano-Lira JF, Guarro J, Houbraken J, Lombard L, Martín MP, Sandoval-Denis M, Alexandrova AV, Barnes CW, Baseia IG, Bezerra JDP, Guarnaccia V, May TW, Hernández-Restrepo M, Stchigel AM, Miller AN, Ordoñez ME, Abreu VP, Accioly T, Agnello C, Agustin Colmán A, Albuquerque CC, Alfredo DS, Alvarado P, Araújo-Magalhães GR, Arauzo S, Atkinson T, Barili A, Barreto RW, Bezerra JL, Cabral TS, Camello Rodríguez F, Cruz RHSF, Daniëls PP, da Silva BDB, de Almeida DAC, de Carvalho Júnior AA, Decock CA, Delgat L, Denman S, Dimitrov RA, Edwards J, Fedosova AG, Ferreira RJ, Firmino AL, Flores JA, García D, Gené J, Góis JS, Gomes AAM, Gonçalves CM, Gouliamova DE, Groenewald M, Guéorguiev BV, Guevara-Suarez M, Gusmão LFP, Hosaka K, Hubka V, Huhndorf SM, Jadan M, Jurjević Ž, Kraak B, Kučera V, Kumar TKA, Kušan I, Lacerda SR, Lamlertthon S, Lisboa WS, Loizides M, Luangsa-ard JJ, Lysková P, Mac Cormack WP, Macedo DM, Machado AR, Malysheva EF, Marinho P, Matočec N, Meijer M, Mešić A, Mongkolsamrit S, Moreira KA, Morozova OV, Nair KU, Nakamura N, Noisripoom W, Olariaga I, Oliveira RJV, Paiva LM, Pawar P, Pereira OL, Peterson SW, Prieto M, Rodríguez-Andrade E, Rojo De Blas C, Roy M, Santos ES, Sharma R, Silva GA, Souza-Motta CM, Takeuchi-Kaneko Y, Tanaka C, Thakur A, Smith MTh, Tkalčec Z, Valenzuela-Lopez N, Van der Kleij P, Verbeken A, Viana MG, Wang XW, Groenewald JZ. (2017) Fungal Planet description sheets: 625–715. Persoonia 39: 270–467. 10.3767/persoonia.2017.39.11 PubMed DOI PMC
Crous PW, Wingfield MJ, Burgess TI, Hardy GEStJ, Crane C, Barrett S, Cano-Lira JF, Le Roux JJ, Thangavel R, Guarro J, Stchigel AM, Martín MP, Alfredo DS, Barber PA, Barreto RW, Baseia IG, Cano-Canals J, Cheewangkoon R, Ferreira RJ, Gené J, Lechat C, Moreno G, Roets F, Shivas RG, Sousa JO, Tan YP, Wiederhold NP, Abell SE, Accioly T, Albizu JL, Alves JL, Antoniolli ZI, Aplin N, Araújo J, Arzanlou M, Bezerra JDP, Bouchara J-P, Carlavilla JR, Castillo A, Castroagudín VL, Ceresini PC, Claridge GF, Coelho G, Coimbra VRM, Costa LA, da Cunha KC, da Silva SS, Daniel R, de Beer ZW, Dueñas M, Edwards J, Enwistle P, Fiuza PO, Fournier J, García D, Gibertoni TB, Giraud S, Guevara-Suárez M, Gusmão LFP, Haituk S, Heykoop M, Hirooka Y, Hofmann TA, Houbraken J, Hughes DP, Kautmanová I, Koppel O, Koukol O, Larsson E, Latha KPD, Lee DH, Lisboa DO, Lisboa WS, López-Villalba Á, Maciel JLN, Manimohan P, Manjón JL, Marincowitz S, Marney TS, Meijer M, Miller AN, Olariaga I, Paiva LM, Piepenbring M, Poveda-Molero JC, Raj KNA, Raja HA, Rougeron A, Salcedo I, Samadi R, Santos TAB, Scarlett K, Seifert KA, Shuttleworth LA, Silva GA, Silva M, Siqueira JPZ, Souza-Motta CM, Stephenson SL, Sutton DA, Tamakeaw N, Telleria MT, Valenzuela-Lopez N, Viljoen A, Visagie CM, Vizzini A, Wartchow F, Wingfield BD, Yurchenko E, Zamora JC, Groenewald JZ. (2016) Fungal Planet description sheets: 469–557. Persoonia 37: 218–403. 10.3767/003158516X694499 PubMed DOI PMC
Crous PW, Wingfield MJ, Burgess TI, Hardy GEStJ, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adamčík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau P-A, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Abdollahzadeh J, Abreu VP, Adamčíková K, Albuquerque GMR, Alexandrova AV, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger J-M, Bezerra JL, Cabral TS, Caboň M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, Čmoková A, Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de A Santiago ALCM, Déniel F, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany J-L, Jurjević Ž, Kolařík M, Kušan I, Landell MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Matočec N, Mešić A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Papp V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, Řehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkalčec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques DA, Wong PTW, Xavier de Lima V, Groenewald JZ. (2018b) Fungal Planet description sheets: 716–784. Persoonia 40: 240–393. 10.3767/persoonia.2018.40.10 PubMed DOI PMC
Crous PW, Wingfield MJ, Guarro J, Hernández-Restrepo M, Sutton DA, Acharya K, Barber PA, Boekhout T, Dimitrov RA, Dueñas M, Dutta AK, Gené J, Gouliamova DE, Groenewald M, Lombard L, Morozova OV, Sarkar J, Smith MTH, Stchigel AM, Wiederhold NP, Alexandrova AV, Antelmi I, Armengol J, Barnes I, Cano-Lira JF, Ruiz Castañeda RF, Contu M, Courtecuisse PrR, da Silveira AL, Decock CA, de Goes A, Edathodu J, Ercole E, Firmino AC, Fourie A, Fournier J, Furtado EL, Geering ADW, Gershenzon J, Giraldo A, Gramaje D, Hammerbacher A, He X-L, Haryadi D, Khemmuk W, Kovalenko AE, Krawczynski R, Laich F, Lechat C, Lopes UP, Madrid H, Malysheva EF, Marín-Felix Y, Martín MP, Mostert L, Nigro F, Pereira OL, Picillo B, Pinho DB, Popov ES, Peláez CA Rodas, Rooney-Latham S, Sandoval-Denis M, Shivas RG, Silva V, Stoilova-Disheva MM, Telleria MT, Ullah C, Unsicker SB, van der Merwe NA, Vizzini A, Wagner H-G, Wong PTW, Wood AR, Groenewald JZ. (2015b) Fungal Planet description sheets: 320–370. Persoonia 34: 167–266. 10.3767/003158515X688433 PubMed DOI PMC
Crous PW, Wingfield MJ, Schumacher RK, Summerell BA, Giraldo A, Gené J, Guarro J, Wanasinghe DN, Hyde KD, Camporesi E, Gareth Jones EB, Thambugala KM, Malysheva EF, Malysheva VF, Acharya K, Álvarez J, Alvarado P, Assefa A, Barnes CW, Bartlett JS, Blanchette RA, Burgess TI, Carlavilla JR, Coetzee MPA, Damm U, Decock CA den Breeÿen A, de Vries B, Dutta AK, Holdom DG, Latham SR, Manjón JL, Marincowitz S, Mirabolfathy M, Moreno G, Nakashima C, Papizadeh M, Fazeli SAS, Amoozegar MA, Romberg MK, Shivas RG, Stalpers JA, Stielow B, Stukely MJC, Swart WJ, Tan YP, van der Bank M, Wood AR, Zhang Y, Groenewald JZ. (2014b) Fungal Planet description sheets: 281–319. Persoonia 33: 212–289. 10.3767/003158514X685680 PubMed DOI PMC
Currey F. (1859) Synopsis of the fructification of the compound Sphaeriæ of the Hookerian herbarium. Transactions of the Linnaean Society of London 22: 257–287. 10.1111/j.1096-3642.1856.tb00098.x DOI
Dai DQ, Phookamsak R, Wijayawardene NN, Li WJ, Bhat DJ, Xu JC, Taylor JE, Hyde KD, Chukeatirote E. (2016) Bambusicolous fungi. Fungal Diversity 82: 1–105. 10.1007/s13225-016-0367-8 DOI
David AS, May G, Schmidt D, Seabloom EW. (2016) Beachgrass invasion in coastal dunes is mediated by soil microbes and lack of disturbance dependence. Ecosphere 11: e01527. 10.1002/ecs2.1527 DOI
de Hoog GS, Gerrits van den Ende AH. (1998) Molecular diagnostics of clinical strains of filamentous Basidiomycetes. Mycoses 41: 183–189. 10.1111/j.1439-0507.1998.tb00321.x PubMed DOI
Ellis JB. (1877) South Jersey fungi. Bulletin of the Torrey Botanical Club 6: 133–135. 10.2307/2477388 DOI
Fernández FA, Huhndorf SM. (2005) New species of Chaetosphaeria, Melanopsammella and Tainosphaeria gen. nov. from the Americas. Fungal Diversity 18: 15–57.
Fernández FA, Miller AN, Huhndorf SM, Lutzoni FM, Zoller S. (2006) Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa. Mycologia 98: 121–130. 10.1080/15572536.2006.11832718 PubMed DOI
Gams W, Holubová-Jechová V. (1976) Chloridium and some other dematiaceous hyphomycetes growing on decaying wood. Studies in Mycology 13: 1–99.
Gooding GV, Lucas GB. (1959) Factors influencing sporangial formation and zoospore activity in Phytophthora parasitica var. nicotianae. Phytopathologia 49: 277–281.
Gutell RR, Gray MW, Schnare MN. (1993) A compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucleic Acids Research 21: 3055–3074. 10.1093/nar/21.13.3055 PubMed DOI PMC
Hall TA. (1999) BioEdit 5.0.9: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
Hashimoto A, Sato G, Matsuda T, Matsumura M, Hatakeyama S, Harada Y, Ikeda H, Tanaka K. (2015) Taxonomic revision of Pseudolachnea and Pseudolachnella, and establishment of Neopseudolachnella and Pseudodinemasporium genera nova. Mycologia 107: 383–408. 10.3852/14-171 PubMed DOI
Hawksworth DL. (2011) A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. IMA Fungus 2: 155–162. 10.3897/mycokeys.1.2062 PubMed DOI PMC
Hawksworth DL. (2012) Managing and coping with names of pleomorphic fungi in a period of transition. IMA Fungus 3: 81–86. 10.5598/imafungus.2012.03.01.03 PubMed DOI PMC
Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, Seifert KA, Taylor JW, Wingfield MJ, Abaci Ö, Aime C, Asan A, Bai FY, de Beer ZW. (2011) The Amsterdam Declaration on fungal nomenclature. IMA Fungus 2: 105–112. 10.5598/imafungus.2011.02.01.14 PubMed DOI PMC
Hernández-Restrepo M, Gené J, Castañeda-Ruiz RF, Mena-Portales J, Crous PW, Guarro J. (2017) Phylogeny of saprobic microfungi from Southern Europe. Studies in Mycology 86: 53–97. 10.1016/j.simyco.2017.05.002 PubMed DOI PMC
Hernández-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gené J, Groenewald JZ, Jabeen S, Khalid AN, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar KC, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW. (2016) Fungal systematics and evolution: FUSE 2. Sydowia 68: 193–230.
Hino I. (1961) Icones fungorum bambusicolorum Japonicorum. The Fuji Bamboo Garden, Gotenba, 1–335.
Holubová-Jechová V. (1972) Craspedodidymum, a new genus of phialosporous Hyphomycetes. Česká Mykologie 26: 70–73.
Holubová-Jechová V. (1973) Lignicolous hyphomycetes from Czechoslovakia. 4. Menispora. Folia Geobotanica et Phytotaxonomica 8: 317–336. 10.1007/BF02852830 DOI
Holubová-Jechová V. (1982) New or interesting phialidic hyphomycetes from Cuba. Mycotaxon 15: 277–292.
Huelsenbeck JP, Ronquist F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755. 10.1093/bioinformatics/17.8.754 PubMed DOI
Hughes SJ. (1965a) New Zealand fungi 3. Catenularia Grove. New Zealand Journal of Botany 3: 136–150. 10.1080/0028825X.1965.10876990 DOI
Hughes SJ, Kendrick WB. (1965b) New Zealand fungi 4. Zanclospora gen. nov. New Zealand Journal of Botany 3: 151–158. 10.1080/0028825X.1965.10876991 DOI
Hughes SJ, Kendrick WB. (1968) New Zealand fungi 12. Menispora, Codinaea, Menisporopsis. New Zealand Journal of Botany 6: 323–375. 10.1080/0028825X.1968.10428818 DOI
Huhndorf SM, Fernández FA. (2005) Teleomorph-anamorph connections: Chaetosphaeria raciborskii and related species, and their Craspedodidymum-like anamorphs. Fungal Diversity 19: 23–49.
Huhndorf SM, Miller AN, Fernández FA. (2004) Molecular systematics of the Sordariales: The order and the family Lasiosphaeriaceae redefined. Mycologia 96: 368–387. 10.1080/15572536.2005.11832982 PubMed DOI
Hustad VP, Miller AN. (2015) Studies in the genus Glutinoglossum. Mycologia 107: 647–657. 10.3852/14-328 PubMed DOI
Hyde KD, Tennakoon DS, Jeewon R, Bhat DJ, Maharachchikumbura SSN, Rossi W, Leonardi M, Lee HB, Mun HY, Houbraken J, Nguyen TTT, Jeon SJ, Frisvad JC, Wanasinghe DN, Lücking R, Aptroot A, Caceres MES, Karunarathna SC, Hongsanan S, Phookamsak R, Silva NI, Thambugala KM, Jayawardena RS, Senanayake IC, Boonmee S, Chen J, Luo ZL, Phukhamsakda C, Pereira OL, Abreu VP, Rosado AWC, Buyck B, Randrianjohany E, Hofstetter V, Gibertoni TB, Silva Soares AM, Plautz Jr HL, Pontes Sotaõ HM, Xavier WKS, Bezerra JDP, Oliveira TGL, Souza-Motta CM, Magalhães OMC, Bundhun D, Harishchandra D, Manawasinghe IS, Dong W, Zhang SN, Bao DF, Samarakoon MC, Pem D, Karunarathna A, Lin CG, Yang J, Perera RH, Kumar V, Huang SK, Dayarathne MC, Ekanayaka AH, Jayasiri SC, Xiao YP, Konta S, Niskanen T, Liimatainen K, Dai YC, Ji XH, Tian XM, Mešić A, Singh SK, Phutthacharoen K, Cai L, Sorvongxay T, Thiyagaraja V, Norphanphoun C, Chaiwan N, Lu YZ, Jiang HB, Zhang JF, Abeywickrama PD, Aluthmuhandiram JVS, Brahmanage RS, Zeng M, Chethana T, Wei DP, Réblová M, Fournier J, Nekvindová J, Barbosa RN, Felinto dos Santos JE, Oliveira NT, Li GJ, Ertz D, Shang QJ, Phillips AJL, Kuo CH, Camporesi E, Bulgakov TS, Lumyong S, Jones EBG, Chomnunti P, Gentekaki E, Bungartz F, Zeng XY, Fryar S, Tkalčec Z, Liang JM, Li GS, Wen TC, Singh PN, Gafforov Y, Promputtha I, Yasanthika E, Goonasekara ID, Zhao RL, Zhao Q, Kirk PM, Liu JK, Yan JY, Mortimer PE, Xu JC, Doilom MW. (2019) Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diversity 96: 1–242. 10.1007/s13225-019-00429-2 DOI
Jeewon R, Yeung SYQ, Hyde KD. (2009) A novel phylogenetic group within Thozetella (Chaetosphaeriaceae): a new taxon based on morphology and DNA sequence analyses. Canadian Journal of Microbiology 55: 680–687. 10.1139/W08-148 PubMed DOI
Johnson J, Evans C, Brown N, Skeates S, Watkinson S, Bass D. (2014) Molecular analysis shows that soil fungi from ancient semi-natural woodland exist in sites converted to non-native conifer plantations. Forestry 87: 705–717. 10.1093/forestry/cpu031 DOI
Karsten PA. (1873) Mycologia Fennica. Pars secunda. Pyrenomycetes. Bidrag till Kännedom af Finlands Natur och Folk 23: I–IX, 1–252.
Kirk PM. (2014) Nomenclatural novelties. Index Fungorum 120: 1.
Konta S, Hongsanan S, Liu JK, Eungwanichayapant PD, Jeewon R, Hyde KD, Maharachchikumbura SSN, Boonmee S. (2017) Leptosporella (Leptosporellaceae fam. nov.) and Linocarpon and Neolinocarpon (Linocarpaceae fam. nov.) are accommodated in Chaetosphaeriales. Mycosphere 8: 1943–1974. 10.5943/mycosphere/8/10/16 DOI
Landvik S. (1996) Neolecta, a fruit-body-producing genus of the basal ascomycetes, as shown by SSU and LSU DNA sequences. Mycological Research 100: 199–202. 10.1016/S0953-7562(96)80122-5 DOI
Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. (2016) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular biology and evolution, msw260. 10.1093/molbev/msw260 PubMed DOI
Léveillé JH. (1846) . Descriptions des champignons de l’herbier du Muséum de Paris. Annales des Sciences Naturelles Botanique, Sér. 3, 5: 249–305.
Lin CG, McKenzie EHC, Liu JK, Jones EBG, Hyde KD. (2019) Hyaline-spored chaetosphaeriaceous hyphomycetes from Thailand and China, with a review of the family Chaetosphaeriaceae. Mycosphere 10: 655–700. 10.5943/mycosphere/10/1/14 DOI
Liu JK, Hyde KD, Jones EBG, Ariyawansa HA, Bhat DJ, Boonmee S, Maharachchikumbura SSN, McKenzie EHC, Phookamsak R, Phukhamsakda C, Shenoy BD, Abdel-Wahab MA, Buyck B, Chen J, Chethana KWT, Singtripop C, Dai DQ, Dai YC, Daranagama DA, Dissanayake AJ, Doliom M, D’souza MJ, Fan XL, Goonasekara ID, Hirayama K, Hongsanan S, Jayasiri SC, Jayawardena RS, Karunarathna SC, Li WJ, Mapook A, Norphanphoun C, Pang KL, Perera RH, Peršoh D, Pinruan U, Senanayake IC, Somrithipol S, Suetrong S, Tanaka K, Thambugala KM, Tian Q, Tibpromma S, Udayanga D, Wijayawardene NN, Wanasinghe D, Wisitrassameewong K, Zeng XY, Abdel-Aziz FA, Adamčík S, Bahkali AH, Boonyuen N, Bulgakov T, Callac P, Chomnunti P, Greiner K, Hashimoto A, Hofstetter V, Kang JC, Lewis D, Li XH, Liu ZY, Liu ZY, Matumura M, Mortimer PE, Rambold R, Randrianjohany E, Sato G, Indrasutdhi VS, Tian CM, Verbeken A, Brackel W, Wang Y, Wen TC, Xu JC, Yan JY, Zhao RL, Camporesi E. (2015) Fungal diversity notes 1–100: Taxonomic and phylogenetic contributions to fungal species. Fungal Diversity 72: 1–197. 10.1007/s13225-015-0324-y DOI
Liu JK, Yang J, Maharachchikumbura SSN, McKenzie EHC, Jones EBG, Hyde KD, Liu ZY. (2016) Novel chaetosphaeriaceous hyphomycetes from aquatic habitats. Mycological Progress 15: 1157–1167. 10.1007/s11557-016-1237-1 DOI
Lu YZ, Liu KJ, Hyde KD, Bhat DJ, Xiao YP, Tian Q, Wen TC, Boonmee S, Kang JC. (2016) Brunneodinemasporium jonesii and Tainosphaeria jonesii spp. nov. (Chaetosphaeriaceae, Chaetosphaeriales) from southern China. Mycosphere 7: 1322–1331. 10.5943/mycosphere/7/9/6 DOI
Luo ZL, Hyde KD, Liu J-K, Maharachchikumbura SSN, Rajesh J, Bao D-F, Bhat DJ, Lin C-G, Li W-L, Yang J, Liu N-G, Lu Y-Z, Jayawardena RS, Li J-F, Su H-Y. (2019) Freshwater Sordariomycetes. Fungal Diversity 99: 451–660. 10.1007/s13225-019-00438-1 DOI
Ma YR, Xia JW, Gao JM, Li Z, Zhang XG. (2016) Anacacumisporium, a new genus based on morphology and molecular analyses from Hainan, China. Cryptogamie Mycologie 37: 45–59. 10.7872/crym/v37.iss1.2016.45 DOI
Magyar D, Shoemaker RA, Bobvos J, Crous PW, Groenewald JZ. (2011) Pyrigemmula, a novel hyphomycete genus on grapevine and tree bark from Hungary. Mycological Progress 10: 307–314. 10.1007/s11557-010-0703-4 DOI
Malloch D. (1981) Moulds: their isolation, cultivation and identification. University of Toronto Press, Toronto, 1–97.
Maire R. (1937) Fungi Catalaunici: Series altera. Contributions a l’étude de la flore mycologique de la Catalogne. Publicacions del Instituto Botánico Barcelona 3: 1–128.
Marvanová L. (1980) New or noteworthy aquatic hyphomycetes. Transactions of the British Mycological Society 75: 221–231. 10.1016/S0007-1536(80)80083-0 DOI
Matsushima T. (1985) Matsushima mycological memoirs 4: 1–68.
Matsushima T. (2003) [2001]. Matsushima mycological memoirs 10: 1–214.
Miller AN, Huhndorf SM. (2004) A natural classification of Lasiosphaeria based on nuclear LSU rDNA sequences. Mycological Research 108: 26–34. 10.1017/S0953756203008864 PubMed DOI
Miller MA, Pfeiffer W, Schwartz T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, 1–8. 10.1109/GCE.2010.5676129 DOI
Müller E, Harr J, Sulmont P. (1969) Deux ascomycètes dont le stade conidien présente des conidies phaeophragmiées endogènes. Revue de Mycologie 33: 369–378.
Penzig AJO, Saccardo PA. (1897) Diagnoses fungorum novorum in insula Java collectorum. Ser. I. Malpighia 11: 387–409. 10.5962/bhl.title.4921 DOI
Perera RH, Maharachchikumbura SSN, Bhat JD, Al-Sadi AM, Liu JK, Hyde KD, Liu ZY. (2016) New species of Thozetella and Chaetosphaeria and new records of Chaetosphaeria and Tainosphaeria from Thailand. Mycosphere 7: 1301–1321. 10.5943/mycosphere/7/9/5 DOI
Plaingam N, Somrithipol S, Jones EBG. (2003) Infundibulomyces: a new genus of coelomycetes from Thailand. Canadian Journal of Botany 81: 732–737. 10.1139/b03-069 DOI
Réblová M. (2004) Four new species of Chaetosphaeria from New Zealand and redescription of Dictyochaeta fuegiana. Studies in Mycology 50: 171–186.
Réblová M, Barr ME, Samuels GJ. (1999) Chaetosphaeriaceae, a new family for Chaetosphaeria and its allies. Sydowia 51: 49–70. 10.33585/cmy.51101 DOI
Réblová M, Gams W. (1999) Teleomorph-anamorph connections in Ascomycetes. 1. Cylindrotrichum and Cacumisporium anamorphs of Chaetosphaeria. Czech Mycology 51: 1–41.
Réblová M, Miller AN, Rossman AY, Seifert KA, Crous PW, Hawksworth DL, Abdel-Wahab MA, Cannon PF, Daranagama DA, De Beer ZW, Huang SK, Hyde KD, Jayawardena R, Jaklitsch W, Jones EBG, Ju YM, Judith C, Maharachchikumbura SSN, Pang KL, Petrini LE, Raja HA, Romero AI, Shearer C, Senanayake IC, Voglmayr H, Weir BS, Wijayawarden NN. (2016) Recommendations for competing sexual-asexually typified generic names in Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales). IMA Fungus 7: 131–153. 10.5598/imafungus.2016.07.01.08 PubMed DOI PMC
Réblová M, Nekvindová J, Kolařík M, Hernández-Restrepo M. (2020) Delimitation and phylogeny of Dictyochaeta, and introduction of Achrochaeta and Tubulicolla genera nova. Mycologia (Accepted). PubMed
Réblová M, Seifert KA. (2003) Six new species of Chaetosphaeria from tropical rain forests in Thailand and redescription of Chaetosphaeria hiugensis. Sydowia 55: 313–347.
Réblová M, Seifert KA. (2007) A new fungal genus, Teracosphaeria, with a phialophora-like anamorph (Sordariomycetes, Ascomycota). Mycological Research 111: 287–298. 10.1016/j.mycres.2006.12.005 PubMed DOI
Réblová M, Seifert KA. (2008) A new species of Chaetosphaeria with Menispora ciliata and phialophora-like anamorphs. Fungal Diversity 29: 99–105.
Réblová M, Winka K. (2000) Phylogeny of Chaetosphaeria and its anamorphs based on morphological and molecular data. Mycologia 92: 939–954. 10.1080/00275514.2000.12061238 DOI
Saccardo PA. (1879) Fungi Gallici lecti a cl. viris P. Brunaud, C.C. Gillet et Abb. Letendre. Michelia 1: 500–538.
Saccardo PA. (1880) Conspectus generum fungorum Italiae inferiorum nempe ad Sphaeropsideas, Melanconieas et Hyphomyceteas pertinentium systemate sporologico dispositorum. Michelia 2: 1–38.
Saccardo PA. (1883) Sylloge Pyrenomycetum. Sylloge Fungorum 2: 1–813.
Samuels GJ, Müller E. (1978) Life-history studies of Brazilian Ascomycetes. 1. Two new genera of Sphaeriaceae having, respectively, Sporoschisma-like and Codinaea anamorphs. Sydowia 31: 126–136.
Sayers EW, Cavanaugh M, Clark K, Ostell J, Pruitt KD, Karsch-Mizrachi I. (2019) GenBank. Nucleic Acids Research 47: D94–D99. 10.1093/nar/gky989 PubMed DOI PMC
Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, De Gruyter J, de Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Hyde KD, Jones EBG, Kohlmeyer J, Kruys Å, Lücking R, Lumbsch HT, Lutzoni F, Marvanová L, McVay AH, Mbatchou JS, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, Owensby CA, Li YM, Phillips AJL, Phongpaichit S, Pointing SB, Pujade-Renaud V, Raja HA, Rivas Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer CA, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wingfield MJ, Wood AR, Woudenberg JHC, Yonezawa H, Zhang Y, Spatafora JW. (2009) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1–15. 10.3114/sim.2009.64.01 PubMed DOI PMC
Seifert K, Morgan-Jones G, Gams W, Kendrick B. (2011) The genera of hyphomycetes. CBS-KNAW Fungal Biodiversity Centre, Utrecht, CBS Biodiversity Series no. 9: 1–997. 10.3767/003158511X617435 DOI
Shenoy BD, Jeewon R, Wang H, Amandeep K, Ho HW, Bhat DJ, Crous PW, Hyde KD. (2010) Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides. Fungal Diversity 44: 161–169. 10.1007/s13225-010-0059-8 DOI
Somrithipol S, Sakayaroj J, Rungjindamai N, Plaingam N, Jones EBG. (2008) Phylogenetic relationship of the coelomycete genus Infundibulomyces based on nuclear rDNA data. Mycologia 100: 735–741. 10.3852/07-040 PubMed DOI
Spegazzini C. (1923) Algunos hongos de Tierra del Fuego. Physis Revista de la Sociedad Argentina de Ciencias Naturales 7: 9–23.
Stamatakis A. (2014) RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics 30: 1312–1313. 10.1093/bioinformatics/btu033 PubMed DOI PMC
Subramanian CV, Bhat DJ. (1977) Bahusutrabeeja, a new genus of the hyphomycetes. Canadian Journal of Botany 55: 2202–2206. 10.1139/b77-249 DOI
Sukosd Z, Knudsen B, Kjems J, Pedersen CN. (2012) PPfold 3.0: Fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics 28: 2691–2692. 10.1093/bioinformatics/bts488 PubMed DOI
Sutton BC. (1965) Typification of Dendrophoma and a reassessment of D. obscurans. Transactions of the British Mycological Society 48: 611–616. 10.1016/S0007-1536(65)80038-9 DOI
Swofford DL. (2003) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland.
Tibpromma S, Hyde KD, McKenzie EHC, Bhat DJ, Phillips AJL, Wanasinghe DN, Samarakoon MC, Jayawardena RS, Dissanayake AJ, Tennakoon DS, Doilom M, Phookamsak R, Tang AMC, Xu JC, Mortimer PE, Promputtha I, Maharachchikumbura SSN, Khan S, Karunarathna SC. (2018) Fungal diversity notes 840–928: micro-fungi associated with Pandanaceae. Fungal Diversity 93: 1–160. 10.1007/s13225-018-0408-6 DOI
Tulasne ELR, Tulasne C. (1863) Selecta Fungorum Carpologia, Tomus Secundus. Xylariei - Valsei - Sphaeriei. Paris, Imperial, Typograph, I–XIX, 1–319.
Vilgalys R, Hester M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. 10.1128/JB.172.8.4238-4246.1990 PubMed DOI PMC
Vu D, Groenewald M, de Vries M, Gehrmann T, Stielow B, Eberhardt U, Al-Hatmi A, Groenewald JZ, Cardinali G, Houbraken J, Boekhout T, Crous PW, Robert V, Verkley GJM. (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154. 10.1016/j.simyco.2018.05.001 PubMed DOI PMC
White TJ, Bruns TD, Lee SB, Taylor JW. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ. (Eds) PCR protocols: A guide to the methods and applications.Academic Press, New York, 315–322. 10.1016/B978-0-12-372180-8.50042-1 DOI
Yang J, Liu JK, Hyde KD, Bhat DJ, Jones EBG, Liu ZY. (2016) New species of Sporoschisma (Chaetosphaeriaceae) from aquatic habitats in Thailand. Phytotaxa 289: 147–157. 10.11646/phytotaxa.289.2.4 DOI
Yang J, Liu NG, Liu JK, Hyde KD, Jones EBG, Liu ZY. (2018) Phylogenetic placement of Cryptophiale, Cryptophialoidea, Nawawia, Neonawawia gen. nov. and Phialosporostilbe. Mycosphere 9: 1132–1150. 10.5943/mycosphere/9/6/5 DOI
Zhang Z, Schwartz S, Wagner L, Miller W. (2000) A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7: 203–214. 10.1089/10665270050081478 PubMed DOI
Zuker M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406–3415. 10.1093/nar/gkg595 PubMed DOI PMC
Phylogenetic Reassessment, Taxonomy, and Biogeography of Codinaea and Similar Fungi
Phylogeny and taxonomy of Catenularia and similar fungi with catenate conidia